ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2k01 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/42 (61%), Positives = 32/42 (76%) Frame = -1 Query: 539 VRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 414 ++M+R+EFELTMAL GC LS+ITR HI TE D R LPR+ Sbjct: 327 LQMLRDEFELTMALSGCRSLSEITRNHIVTEWD-TPRHLPRL 367
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 46.6 bits (109), Expect = 4e-05 Identities = 23/42 (54%), Positives = 30/42 (71%) Frame = -1 Query: 539 VRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 414 ++M+R+EFELTMAL GC L +I+R HI TE D RP R+ Sbjct: 327 LQMLRDEFELTMALSGCRSLKEISRNHITTEWD-TPRPSARL 367
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = -1 Query: 539 VRMMREEFELTMALGGCTKLSDITREHIFTEGD 441 ++MMR+EFELTMAL GC L +I+R HI + D Sbjct: 327 LQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5| Length = 453 Score = 34.3 bits (77), Expect = 0.23 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 144 NTIWCSRCEIWWKWRDVPVDKY 209 N+ WC C + W+WR +P D Y Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 31.6 bits (70), Expect = 1.5 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 3/91 (3%) Frame = -3 Query: 531 DAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXX---XXXXXXTA 361 D V A A R QAQ H+H PP PAA ++ H A Sbjct: 78 DRQRVMALQTALRRAQAQDEQRALHMHEV-PPANPAATTLLSHHHHVAAPAHVHAHHVHA 136 Query: 360 GHMHASQYPPQRNATHAIITANSISTTPSAP 268 H H + + H A + + PSAP Sbjct: 137 HHAHGGHHSHHGHVLHHQQAAAAAAAAPSAP 167
>CLTR2_PIG (Q95N03) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 345 Score = 31.6 bits (70), Expect = 1.5 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = -3 Query: 198 PARLAISTIFRTDYTILYFHVLLGPHVY---THRFCIYHTLSSSKAYLDTGIIWIHVELI 28 P R+ +++ Y+ +YF +L + H F + HT S A++ G+IWI + + Sbjct: 111 PCRIMSYSMYVNMYSSIYFLTVLSVVRFLATVHPFRLLHTTSIKNAWILCGVIWIFI-MA 169 Query: 27 KVQALLQGG 1 LL+ G Sbjct: 170 SSTVLLKNG 178
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -3 Query: 528 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 427 AGG A HHG R H H HP +H H+ PP P Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -3 Query: 528 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 427 AGG A HHG R H H HP +H H+ PP P Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -3 Query: 528 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 427 AGG A HHG R H H HP +H H+ PP P Sbjct: 203 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +2 Query: 215 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 343 N+S++ +RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 309 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = -3 Query: 192 RLAISTIFRTDYTILYFHVLLGP---HVYTHRFCIYHTLSSSKAYLDTGIIWIHVELIKV 22 R+ +++ YT +YF +L H F ++H S A++ GIIW+ + Sbjct: 96 RVMSYSLYVNMYTSIYFLTVLSVVRFQATVHPFRMFHVTSVRSAWILCGIIWVFIMASSA 155 Query: 21 QALLQG 4 L+ G Sbjct: 156 LLLVNG 161
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X| Length = 462 Score = 30.4 bits (67), Expect = 3.3 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = -3 Query: 537 AHDAGGVRAHHGARRVHQAQRHHPRTHLHRG 445 AHD G HHG + HH H H G Sbjct: 89 AHDHGHAHDHHGHSHDEEEDHHHGHAHDHHG 119
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +2 Query: 215 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 343 N+S+T ++PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = -3 Query: 513 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 427 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor| Length = 61 Score = 29.6 bits (65), Expect = 5.6 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = +1 Query: 91 MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 267 M N +S+ Y Q D + VVG KY GNG C T + + +G + AG RLA+ Sbjct: 1 MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = -3 Query: 513 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 427 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 374 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 90 YDKYRIDECIRADPIGHGNTIWCSRCE 170 YD +C ++DP HG IWCS C+ Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135
>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 434 Score = 29.3 bits (64), Expect = 7.4 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +2 Query: 167 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 340 RN E+ARRAGR + + A RP P DT + AD + D+ I V GGY Sbjct: 24 RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81 Query: 341 WLA 349 LA Sbjct: 82 TLA 84
>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25| Length = 447 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 516 RAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAED 415 R+ H H++ RH R+H HR R P +P D Sbjct: 195 RSRHEDEDAHRSHRH--RSHRHRSRSPLSPDRSD 226
>Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2059c| Length = 341 Score = 28.9 bits (63), Expect = 9.6 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +2 Query: 284 VDIEFAVIIACVALRCGGYWLACICPAVRRDGDE 385 +D+ A ++ + CGG +A P ++ DGDE Sbjct: 113 LDVNTATLVGVGSSICGGSAIAATAPVIQADGDE 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,788,548 Number of Sequences: 219361 Number of extensions: 1457831 Number of successful extensions: 4217 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4162 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
