ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473653.1| Oryza sativa (japonica cultivar-group), predic... 100 1e-17
2emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 100 1e-17
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
5dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
6emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on ch... 42 2.1
7gb|AC092910.9| Homo sapiens 3 BAC RP11-767L7 (Roswell Park Cance... 42 2.1
8gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 42 2.1
9gb|AC151792.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.1
10ref|XM_517637.1| PREDICTED: Pan troglodytes similar to triple fu... 40 8.1
11ref|NM_001003007.1| Canis familiaris elastase 1, pancreatic (ELA... 40 8.1
12gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, c... 40 8.1
13ref|XM_370166.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 8.1
14ref|NM_007118.2| Homo sapiens triple functional domain (PTPRF in... 40 8.1
15gb|AC107456.9| Mus musculus chromosome 3, clone RP23-273L6, comp... 40 8.1
16ref|XM_383876.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.1
17gb|AC000065.1| Homo sapiens BAC clone CTB-85C5 from 7, complete ... 40 8.1
18gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, com... 40 8.1
19emb|BX248386.35| Zebrafish DNA sequence from clone CH211-231M12,... 40 8.1
20emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.1
21gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gen... 40 8.1
22gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, co... 40 8.1
23gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, c... 40 8.1
24gb|AC114950.2| Homo sapiens chromosome 5 clone CTD-3159E21, comp... 40 8.1
25gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complet... 40 8.1
26gb|AC026724.3| Homo sapiens chromosome 5 clone CTD-2229I16, comp... 40 8.1
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
28gb|AC154484.2| Mus musculus BAC clone RP24-115C5 from chromosome... 40 8.1
29dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 8.1
30gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, comple... 40 8.1
31gb|AC117515.8| Homo sapiens 3 BAC RP11-797J6 (Roswell Park Cance... 40 8.1
32gb|BC035585.1| Homo sapiens, Similar to triple functional domain... 40 8.1
33dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
34gb|AC004551.1|AC004551 Homo sapiens 12q24.1 PAC RPCI1-71H24 (Ros... 40 8.1
35emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chrom... 40 8.1
36dbj|AB100595.1| Canis familiaris ELS1 mRNA for elastase 1, compl... 40 8.1
37gb|AF091395.1|AF091395 Homo sapiens Trio isoform mRNA, complete cds 40 8.1
38gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, c... 40 8.1
39gb|U42390.1|HSU42390 Homo sapiens Trio mRNA, complete cds 40 8.1
40dbj|AB209754.1| Homo sapiens mRNA for triple functional domain (... 40 8.1
41emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chr... 40 8.1 
>ref|XM_473653.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                        
Query: 468  agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 527
            |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 1685 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 1626

                                                                        
Query: 528  agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 587
            |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 1625 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 1566

              
Query: 588  tc 589
            ||
Sbjct: 1565 tc 1564



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                        
Query: 326  tcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctccag 385
            |||||||||||| |||||| || |||| | |   ||||||||| | ||||| ||||||||
Sbjct: 1821 tcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctccag 1762

                                                               
Query: 386  cccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 436
            |||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 1761 cccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 1711
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>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
              complete sequence
          Length = 186325

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                          
Query: 468    agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 527
              |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 103814 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 103755

                                                                          
Query: 528    agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 587
              |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 103754 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 103695

                
Query: 588    tc 589
              ||
Sbjct: 103694 tc 103693



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                          
Query: 325    atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 384
              ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 103951 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 103892

                                                                  
Query: 385    gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 436
              ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 103891 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 103840



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 201    gcatggaggcaagcaaatatttacctatttt 231
              |||| |||||||||||||||||||| |||||
Sbjct: 104075 gcattgaggcaagcaaatatttacccatttt 104045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                            
Query: 468      agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 527
                |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 29430798 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 29430739

                                                                            
Query: 528      agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 587
                |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 29430738 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 29430679

                  
Query: 588      tc 589
                ||
Sbjct: 29430678 tc 29430677



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                            
Query: 325      atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 384
                ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 29430935 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 29430876

                                                                    
Query: 385      gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 436
                ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 29430875 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 29430824



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 201      gcatggaggcaagcaaatatttacctatttt 231
                |||| |||||||||||||||||||| |||||
Sbjct: 29431059 gcattgaggcaagcaaatatttacccatttt 29431029
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>dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132A21, full
            insert sequence
          Length = 4615

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                        
Query: 468  agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 527
            |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 1856 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 1915

                                                                        
Query: 528  agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 587
            |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 1916 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 1975

              
Query: 588  tc 589
            ||
Sbjct: 1976 tc 1977



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Plus

                                                                        
Query: 325  atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 384
            ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 1719 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 1778

                                                                
Query: 385  gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 436
            ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 1779 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 1830



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 201  gcatggaggcaagcaaatatttacctatttt 231
            |||| |||||||||||||||||||| |||||
Sbjct: 1595 gcattgaggcaagcaaatatttacccatttt 1625
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>dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G18, full
            insert sequence
          Length = 2259

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                        
Query: 468  agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 527
            |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 1747 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 1688

                                                                        
Query: 528  agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 587
            |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 1687 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 1628

              
Query: 588  tc 589
            ||
Sbjct: 1627 tc 1626



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 325  atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 384
            ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 1884 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 1825

                                                                
Query: 385  gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 436
            ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 1824 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 1773



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 201  gcatggaggcaagcaaatatttacctatttt 231
            |||| |||||||||||||||||||| |||||
Sbjct: 2008 gcattgaggcaagcaaatatttacccatttt 1978
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>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the
              3' end of the gene similar to G protein coupled receptor
              affecting testicular descent (H. sapiens)(GREAT)and a CpG
              island, complete sequence
          Length = 170522

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    attttctacaatacatttaca 174
              |||||||||||||||||||||
Sbjct: 156606 attttctacaatacatttaca 156586
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>gb|AC092910.9| Homo sapiens 3 BAC RP11-767L7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    tatttacctattttgcttcaaattt 242
              |||||||||||||||||| ||||||
Sbjct: 138423 tatttacctattttgctttaaattt 138399
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   attttctacaatacatttaca 174
             |||||||||||||||||||||
Sbjct: 40076 attttctacaatacatttaca 40056
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>gb|AC151792.1| Ornithorhynchus anatinus chromosome UNK clone OABb-103A1, complete
             sequence
          Length = 107943

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   tgctgaagatgagcaccagg 307
             ||||||||||||||||||||
Sbjct: 45330 tgctgaagatgagcaccagg 45349
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>ref|XM_517637.1| PREDICTED: Pan troglodytes similar to triple functional domain
           (PTPRF interacting) (LOC461730), mRNA
          Length = 3633

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 458 gtccctgagcagctggatgaggtc 481
           |||||||||| |||||||||||||
Sbjct: 921 gtccctgagctgctggatgaggtc 898
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>ref|NM_001003007.1| Canis familiaris elastase 1, pancreatic (ELA1), mRNA
          Length = 938

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 tgtccagctgggtgtcctgc 449
           ||||||||||||||||||||
Sbjct: 383 tgtccagctgggtgtcctgc 402
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>gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, complete sequence
          Length = 188940

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    atcagatcattttggtggta 143
              ||||||||||||||||||||
Sbjct: 172235 atcagatcattttggtggta 172216
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>ref|XM_370166.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
            (MG06663.4) partial mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  gatgctgaagatgagcacca 305
            ||||||||||||||||||||
Sbjct: 1140 gatgctgaagatgagcacca 1121
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>ref|NM_007118.2| Homo sapiens triple functional domain (PTPRF interacting) (TRIO),
            mRNA
          Length = 10244

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 458  gtccctgagcagctggatgaggtc 481
            |||||||||| |||||||||||||
Sbjct: 2226 gtccctgagctgctggatgaggtc 2203
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>gb|AC107456.9| Mus musculus chromosome 3, clone RP23-273L6, complete sequence
          Length = 185661

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   caccttcatgtccctgagca 468
             ||||||||||||||||||||
Sbjct: 61908 caccttcatgtccctgagca 61927
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>ref|XM_383876.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03700.1)
           partial mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 ggctgttgagaacgatcatg 419
           ||||||||||||||||||||
Sbjct: 247 ggctgttgagaacgatcatg 228
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>gb|AC000065.1| Homo sapiens BAC clone CTB-85C5 from 7, complete sequence
          Length = 82261

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   acaatacatttacagtgtca 180
             ||||||||||||||||||||
Sbjct: 74021 acaatacatttacagtgtca 74040
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>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence
          Length = 182640

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   acagagcagtgcctttctcc 262
             ||||||||||||||||||||
Sbjct: 87770 acagagcagtgcctttctcc 87789
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>emb|BX248386.35| Zebrafish DNA sequence from clone CH211-231M12, complete sequence
          Length = 148681

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   ttctacaatacatttacagt 176
             ||||||||||||||||||||
Sbjct: 45061 ttctacaatacatttacagt 45080
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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 457   tgtccctgagcagctggatgaggtcgttgaac 488
             |||||||||||  |||||| ||||||||||||
Sbjct: 11018 tgtccctgagcttctggataaggtcgttgaac 10987
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>gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gene, complete cds
          Length = 220803

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    acaatacatttacagtgtca 180
              ||||||||||||||||||||
Sbjct: 153841 acaatacatttacagtgtca 153822
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>gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, complete sequence
          Length = 149726

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ataatacaactgtatgtaca 56
             ||||||||||||||||||||
Sbjct: 23168 ataatacaactgtatgtaca 23149
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>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   tcaatttcttcacgattcaa 197
             ||||||||||||||||||||
Sbjct: 24792 tcaatttcttcacgattcaa 24811
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>gb|AC114950.2| Homo sapiens chromosome 5 clone CTD-3159E21, complete sequence
          Length = 68972

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ataggggctataatacaact 47
             ||||||||||||||||||||
Sbjct: 18839 ataggggctataatacaact 18858
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>gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complete sequence
          Length = 151389

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   aatcctggagccacctgaca 374
             ||||||||||||||||||||
Sbjct: 92410 aatcctggagccacctgaca 92391
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>gb|AC026724.3| Homo sapiens chromosome 5 clone CTD-2229I16, complete sequence
          Length = 156254

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     ataggggctataatacaact 47
              ||||||||||||||||||||
Sbjct: 143152 ataggggctataatacaact 143133
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 330      gttttctcctccacggaatt 349
                ||||||||||||||||||||
Sbjct: 23515750 gttttctcctccacggaatt 23515769
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>gb|AC154484.2| Mus musculus BAC clone RP24-115C5 from chromosome 14, complete sequence
          Length = 193855

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cattttctacaatacattta 172
             ||||||||||||||||||||
Sbjct: 24473 cattttctacaatacattta 24492
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 457     tgtccctgagcagctggatgaggtcgttgaac 488
               |||||||||||  |||||| ||||||||||||
Sbjct: 2483842 tgtccctgagcttctggataaggtcgttgaac 2483811
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>gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, complete sequence
          Length = 187848

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    aaatatttacctattttgct 234
              ||||||||||||||||||||
Sbjct: 184712 aaatatttacctattttgct 184731
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>gb|AC117515.8| Homo sapiens 3 BAC RP11-797J6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126982

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   gaattgaagtaatcctggag 364
             ||||||||||||||||||||
Sbjct: 41157 gaattgaagtaatcctggag 41138
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>gb|BC035585.1| Homo sapiens, Similar to triple functional domain (PTPRF
            interacting), clone IMAGE:5497679, mRNA, partial cds
          Length = 5009

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 458  gtccctgagcagctggatgaggtc 481
            |||||||||| |||||||||||||
Sbjct: 2169 gtccctgagctgctggatgaggtc 2146
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1791_B03
          Length = 166214

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   gttttctcctccacggaatt 349
             ||||||||||||||||||||
Sbjct: 81433 gttttctcctccacggaatt 81452
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>gb|AC004551.1|AC004551 Homo sapiens 12q24.1 PAC RPCI1-71H24 (Roswell Park Cancer Institute Human
              PAC library) complete sequence
          Length = 162346

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 437    ctgggtgtcctgcaccttcatgtc 460
              ||||||||||||||||| ||||||
Sbjct: 150836 ctgggtgtcctgcacctccatgtc 150859
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>emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chromosome X, complete
             sequence
          Length = 136485

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   atatttacctattttgcttcaaat 240
             |||||||||||||||| |||||||
Sbjct: 15232 atatttacctattttgtttcaaat 15209
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>dbj|AB100595.1| Canis familiaris ELS1 mRNA for elastase 1, complete cds
          Length = 938

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 tgtccagctgggtgtcctgc 449
           ||||||||||||||||||||
Sbjct: 383 tgtccagctgggtgtcctgc 402
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>gb|AF091395.1|AF091395 Homo sapiens Trio isoform mRNA, complete cds
          Length = 9449

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 458  gtccctgagcagctggatgaggtc 481
            |||||||||| |||||||||||||
Sbjct: 2109 gtccctgagctgctggatgaggtc 2086
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>gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, complete sequence
          Length = 172148

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   atcagatcattttggtggta 143
             ||||||||||||||||||||
Sbjct: 56321 atcagatcattttggtggta 56302
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>gb|U42390.1|HSU42390 Homo sapiens Trio mRNA, complete cds
          Length = 8906

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 458  gtccctgagcagctggatgaggtc 481
            |||||||||| |||||||||||||
Sbjct: 2109 gtccctgagctgctggatgaggtc 2086
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>dbj|AB209754.1| Homo sapiens mRNA for triple functional domain (PTPRF interacting)
            variant protein
          Length = 7455

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 458  gtccctgagcagctggatgaggtc 481
            |||||||||| |||||||||||||
Sbjct: 1138 gtccctgagctgctggatgaggtc 1115
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>emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chromosome 2, complete
             sequence
          Length = 142263

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tttacagagcagtgcctttc 259
             ||||||||||||||||||||
Sbjct: 29059 tttacagagcagtgcctttc 29078


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,224,827
Number of Sequences: 3902068
Number of extensions: 5224827
Number of successful extensions: 111346
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111180
Number of HSP's gapped (non-prelim): 156
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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