| Clone Name | rbaal2i22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469179.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1904 Score = 220 bits (111), Expect = 4e-54 Identities = 305/370 (82%) Strand = Plus / Minus Query: 247 aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306 |||||||||||| || ||||| |||||||| |||||||| | | ||||| ||||| || Sbjct: 1623 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 1564 Query: 307 cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366 |||||||||||||| ||||| |||||| | || ||||||||||| ||||| || || || Sbjct: 1563 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 1504 Query: 367 cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426 || || |||||||||||||| | |||||| ||| || ||||| || |||||||| || Sbjct: 1503 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 1444 Query: 427 cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486 ||||||||||||||| ||||| || ||| | || |||| || ||||| ||||| || || Sbjct: 1443 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 1384 Query: 487 actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546 |||||| || || ||||| || ||||| || ||||| ||||||||||| |||| ||||| Sbjct: 1383 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 1324 Query: 547 ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606 |||||| |||| |||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 1323 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 1264 Query: 607 ttgttctctc 616 ||| |||||| Sbjct: 1263 ttgctctctc 1254 Score = 42.1 bits (21), Expect = 2.1 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 168 aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215 ||||||||| ||||||||||||| ||| | | |||||||||||||||| Sbjct: 1696 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 1648
>dbj|AK102364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091J20, full insert sequence Length = 1905 Score = 220 bits (111), Expect = 4e-54 Identities = 305/370 (82%) Strand = Plus / Minus Query: 247 aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306 |||||||||||| || ||||| |||||||| |||||||| | | ||||| ||||| || Sbjct: 1624 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 1565 Query: 307 cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366 |||||||||||||| ||||| |||||| | || ||||||||||| ||||| || || || Sbjct: 1564 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 1505 Query: 367 cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426 || || |||||||||||||| | |||||| ||| || ||||| || |||||||| || Sbjct: 1504 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 1445 Query: 427 cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486 ||||||||||||||| ||||| || ||| | || |||| || ||||| ||||| || || Sbjct: 1444 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 1385 Query: 487 actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546 |||||| || || ||||| || ||||| || ||||| ||||||||||| |||| ||||| Sbjct: 1384 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 1325 Query: 547 ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606 |||||| |||| |||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 1324 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 1265 Query: 607 ttgttctctc 616 ||| |||||| Sbjct: 1264 ttgctctctc 1255 Score = 42.1 bits (21), Expect = 2.1 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 168 aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215 ||||||||| ||||||||||||| ||| | | |||||||||||||||| Sbjct: 1697 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 1649
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 2e-53 Identities = 304/369 (82%) Strand = Plus / Plus Query: 247 aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306 |||||||||||| || ||||| |||||||| |||||||| | | ||||| ||||| || Sbjct: 25921641 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 25921700 Query: 307 cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366 |||||||||||||| ||||| |||||| | || ||||||||||| ||||| || || || Sbjct: 25921701 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 25921760 Query: 367 cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426 || || |||||||||||||| | |||||| ||| || ||||| || |||||||| || Sbjct: 25921761 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 25921820 Query: 427 cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486 ||||||||||||||| ||||| || ||| | || |||| || ||||| ||||| || || Sbjct: 25921821 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 25921880 Query: 487 actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546 |||||| || || ||||| || ||||| || ||||| ||||||||||| |||| ||||| Sbjct: 25921881 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 25921940 Query: 547 ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606 |||||| |||| |||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 25921941 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 25922000 Query: 607 ttgttctct 615 ||| ||||| Sbjct: 25922001 ttgctctct 25922009 Score = 42.1 bits (21), Expect = 2.1 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 168 aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215 ||||||||| ||||||||||||| ||| | | |||||||||||||||| Sbjct: 25921568 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 25921616
>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence Length = 140720 Score = 218 bits (110), Expect = 2e-53 Identities = 304/369 (82%) Strand = Plus / Minus Query: 247 aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306 |||||||||||| || ||||| |||||||| |||||||| | | ||||| ||||| || Sbjct: 86279 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 86220 Query: 307 cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366 |||||||||||||| ||||| |||||| | || ||||||||||| ||||| || || || Sbjct: 86219 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 86160 Query: 367 cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426 || || |||||||||||||| | |||||| ||| || ||||| || |||||||| || Sbjct: 86159 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 86100 Query: 427 cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486 ||||||||||||||| ||||| || ||| | || |||| || ||||| ||||| || || Sbjct: 86099 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 86040 Query: 487 actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546 |||||| || || ||||| || ||||| || ||||| ||||||||||| |||| ||||| Sbjct: 86039 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 85980 Query: 547 ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606 |||||| |||| |||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 85979 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 85920 Query: 607 ttgttctct 615 ||| ||||| Sbjct: 85919 ttgctctct 85911 Score = 42.1 bits (21), Expect = 2.1 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 168 aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215 ||||||||| ||||||||||||| ||| | | |||||||||||||||| Sbjct: 86352 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 86304
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 2e-53 Identities = 304/369 (82%) Strand = Plus / Plus Query: 247 aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306 |||||||||||| || ||||| |||||||| |||||||| | | ||||| ||||| || Sbjct: 26012950 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 26013009 Query: 307 cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366 |||||||||||||| ||||| |||||| | || ||||||||||| ||||| || || || Sbjct: 26013010 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 26013069 Query: 367 cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426 || || |||||||||||||| | |||||| ||| || ||||| || |||||||| || Sbjct: 26013070 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 26013129 Query: 427 cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486 ||||||||||||||| ||||| || ||| | || |||| || ||||| ||||| || || Sbjct: 26013130 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 26013189 Query: 487 actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546 |||||| || || ||||| || ||||| || ||||| ||||||||||| |||| ||||| Sbjct: 26013190 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 26013249 Query: 547 ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606 |||||| |||| |||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct: 26013250 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 26013309 Query: 607 ttgttctct 615 ||| ||||| Sbjct: 26013310 ttgctctct 26013318 Score = 42.1 bits (21), Expect = 2.1 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 168 aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215 ||||||||| ||||||||||||| ||| | | |||||||||||||||| Sbjct: 26012877 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 26012925
>gb|AY104210.1| Zea mays PCO085619 mRNA sequence Length = 1982 Score = 216 bits (109), Expect = 7e-53 Identities = 288/348 (82%) Strand = Plus / Minus Query: 269 cctccctgcatatgatcattggccggtggcgggttcaccacagggatatccaggctgctg 328 |||||||| ||||||||| || | ||||| || || |||||||| ||||||| ||||| | Sbjct: 1658 cctccctggatatgatcactgactggtgggggattgaccacaggaatatccaagctgccg 1599 Query: 329 ccttccgcctccggggagacctcgcgcacgtcagcaatcagcgcctccgactgctggaag 388 || |||||||| ||||||||||| || || ||||| |||||||| || | |||||||||| Sbjct: 1598 ccgtccgcctctggggagacctcccggacatcagcgatcagcgcttctggctgctggaag 1539 Query: 389 ccgccccacaccgggtcgccgatggggcggatgtccaccccatccacggccagctggacc 448 | | |||| | | ||||| | || |||||||||||||||||||| |||||||||||| Sbjct: 1538 ctactccactctgcatcgccaacaggacggatgtccaccccatccacagccagctggacc 1479 Query: 449 tccgtgctctcgctgganaccaggaccgatctcgaatcactcacgcacgccttgtccacg 508 || ||||| ||||| || ||| |||||||||| || ||||| ||||| || |||||||| Sbjct: 1478 tcagtgctatcgctcgaaaccgggaccgatctagagtcacttacgcaggctttgtccaca 1419 Query: 509 tcgtcgtccgatgcgtcgacgtgcttcgtcagcggaggggagttgtcggcgccggagcat 568 || ||||| |||||||| || ||||| |||| | |||| || || |||||||| |||||| Sbjct: 1418 tcatcgtctgatgcgtcaacatgctttgtcaacagaggtgaattatcggcgcctgagcat 1359 Query: 569 gactcggatctctcctcacatacttgcttcgtgctgctttgttctctc 616 || || || |||||||| ||||||||||| |||||||| || |||||| Sbjct: 1358 gattcagacctctcctcgcatacttgctttgtgctgctctgctctctc 1311
>gb|DQ167769.1| Drosophila erecta putative Oxysterol binding protein (Osbp) gene, exons 1, 2 and partial cds Length = 2054 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 495 acgccttgtccacgtcgtcgtc 516 |||||||||||||||||||||| Sbjct: 775 acgccttgtccacgtcgtcgtc 754
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ctggaagccgccccacaccgg 402 ||||||||||||||||||||| Sbjct: 2511632 ctggaagccgccccacaccgg 2511612
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 cggggagacctcgcgcacgtc 360 ||||||||||||||||||||| Sbjct: 1665674 cggggagacctcgcgcacgtc 1665654
>gb|AC020646.2|AC020646 Genomic sequence for Arabidopsis thaliana BAC T32E20 from chromosome I, complete sequence Length = 103931 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 caaaccgctatcatcttttattgag 94 ||||||| ||||||||||||||||| Sbjct: 52229 caaaccggtatcatcttttattgag 52253
>ref|NM_179211.1| Arabidopsis thaliana FCA (FCA); RNA binding AT4G16280 (FCA) transcript variant AT4G16280.1 mRNA, complete cds Length = 4732 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 atcacaagccatccaagaaa 228 |||||||||||||||||||| Sbjct: 1717 atcacaagccatccaagaaa 1698
>ref|XM_467836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1393 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 gccttccgcctccggggagacctcgcgc 355 |||||||||||||| || |||||||||| Sbjct: 669 gccttccgcctccgcggcgacctcgcgc 696
>ref|XM_506975.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1288_G09.10 mRNA Length = 1654 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 gccttccgcctccggggagacctcgcgc 355 |||||||||||||| || |||||||||| Sbjct: 911 gccttccgcctccgcggcgacctcgcgc 938
>gb|AC121598.3| Mus musculus BAC clone RP23-300F10 from chromosome 15, complete sequence Length = 189823 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tatcatcttttattgagttg 97 |||||||||||||||||||| Sbjct: 99303 tatcatcttttattgagttg 99284
>emb|CR626886.6| Zebrafish DNA sequence from clone CH211-255I3 in linkage group 16, complete sequence Length = 165396 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttgtcagtctcctcaataat 210 |||||||||||||||||||| Sbjct: 54024 ttgtcagtctcctcaataat 54005
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 346 gacctcgcgcacgtcagcaatcagcgcctccg 377 ||||||||||| | ||| |||||||||||||| Sbjct: 3606847 gacctcgcgcatgccaggaatcagcgcctccg 3606816
>emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5 Length = 209164 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 atcacaagccatccaagaaa 228 |||||||||||||||||||| Sbjct: 179426 atcacaagccatccaagaaa 179445
>emb|Z82993.1|ATZ82993 A.thaliana mRNA for FCA alpha 1 and alpha 2 Length = 5113 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 atcacaagccatccaagaaa 228 |||||||||||||||||||| Sbjct: 1718 atcacaagccatccaagaaa 1699
>emb|Z82992.1|ATZ82992 A.thaliana FCA gene encoding FCA alpha, beta, gamma and delta Length = 9763 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 atcacaagccatccaagaaa 228 |||||||||||||||||||| Sbjct: 3177 atcacaagccatccaagaaa 3158
>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43 Length = 198226 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 atcacaagccatccaagaaa 228 |||||||||||||||||||| Sbjct: 148416 atcacaagccatccaagaaa 148435
>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence Length = 166581 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 tgcatacttaaatacaacggacacacaa 123 |||||||||||| |||||| |||||||| Sbjct: 166040 tgcatacttaaacacaacgcacacacaa 166013
>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence Length = 171080 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 tgcatacttaaatacaacggacacacaa 123 |||||||||||| |||||| |||||||| Sbjct: 96259 tgcatacttaaacacaacgcacacacaa 96286
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 gccttccgcctccggggagacctcgcgc 355 |||||||||||||| || |||||||||| Sbjct: 31668157 gccttccgcctccgcggcgacctcgcgc 31668184
>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete sequence Length = 126143 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 tgcatacttaaatacaacggacacacaa 123 |||||||||||| |||||| |||||||| Sbjct: 65196 tgcatacttaaacacaacgcacacacaa 65169
>gb|AC079462.2|AC079462 Homo sapiens X PAC GS1-554N22 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 77050 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gacaaaccgctatcatcttt 87 |||||||||||||||||||| Sbjct: 50604 gacaaaccgctatcatcttt 50585
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 gccttccgcctccggggagacctcgcgc 355 |||||||||||||| || |||||||||| Sbjct: 47944 gccttccgcctccgcggcgacctcgcgc 47971
>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence Length = 117052 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 tgcatacttaaatacaacggacacacaa 123 |||||||||||| |||||| |||||||| Sbjct: 17180 tgcatacttaaacacaacgcacacacaa 17207
>dbj|AK105991.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H01, full insert sequence Length = 1393 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 gccttccgcctccggggagacctcgcgc 355 |||||||||||||| || |||||||||| Sbjct: 669 gccttccgcctccgcggcgacctcgcgc 696
>dbj|AK105877.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C05, full insert sequence Length = 1654 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 gccttccgcctccggggagacctcgcgc 355 |||||||||||||| || |||||||||| Sbjct: 911 gccttccgcctccgcggcgacctcgcgc 938
>emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 map Xq28, complete sequence Length = 199100 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gacaaaccgctatcatcttt 87 |||||||||||||||||||| Sbjct: 167064 gacaaaccgctatcatcttt 167083
>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192387 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 attcaaatccttgtcagtct 200 |||||||||||||||||||| Sbjct: 67970 attcaaatccttgtcagtct 67951
>emb|AJ617740.1| Pseudomonas putida clc transposon Length = 105027 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 346 gacctcgcgcacgtcagcaatcagcgcctccg 377 ||||||||||| | ||| |||||||||||||| Sbjct: 57270 gacctcgcgcatgccaggaatcagcgcctccg 57301
>emb|AL954327.12| Zebrafish DNA sequence from clone DKEY-18H14 in linkage group 16, complete sequence Length = 237124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ttgtcagtctcctcaataat 210 |||||||||||||||||||| Sbjct: 5969 ttgtcagtctcctcaataat 5988
>emb|AL928959.9| Mouse DNA sequence from clone RP23-73I19 on chromosome 2, complete sequence Length = 143937 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cacaaaagtaattctcgaga 178 |||||||||||||||||||| Sbjct: 132019 cacaaaagtaattctcgaga 132000
>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete sequence Length = 189517 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 tgcatacttaaatacaacggacacacaa 123 |||||||||||| |||||| |||||||| Sbjct: 175999 tgcatacttaaacacaacgcacacacaa 176026
>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete sequence Length = 151493 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aatttacaatcacacgacaa 72 |||||||||||||||||||| Sbjct: 69165 aatttacaatcacacgacaa 69146
>gb|U40455.1|HSU40455 Human chromosome X cosmid, clones 196B12, 9H11 and 43H9, repeat units and sequence tagged sites Length = 106000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gacaaaccgctatcatcttt 87 |||||||||||||||||||| Sbjct: 48763 gacaaaccgctatcatcttt 48744
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 ccgatggggcggatgtccac 426 |||||||||||||||||||| Sbjct: 41997 ccgatggggcggatgtccac 41978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,032,187 Number of Sequences: 3902068 Number of extensions: 4032187 Number of successful extensions: 71920 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71669 Number of HSP's gapped (non-prelim): 241 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)