ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469179.1| Oryza sativa (japonica cultivar-group), mRNA 220 4e-54
2dbj|AK102364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 4e-54
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 218 2e-53
4gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genom... 218 2e-53
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
6gb|AY104210.1| Zea mays PCO085619 mRNA sequence 216 7e-53
7gb|DQ167769.1| Drosophila erecta putative Oxysterol binding prot... 44 0.54
8gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 2.1
9gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 2.1
10gb|AC020646.2|AC020646 Genomic sequence for Arabidopsis thaliana... 42 2.1
11ref|NM_179211.1| Arabidopsis thaliana FCA (FCA); RNA binding AT4... 40 8.4
12ref|XM_467836.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
13ref|XM_506975.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 8.4
14gb|AC121598.3| Mus musculus BAC clone RP23-300F10 from chromosom... 40 8.4
15emb|CR626886.6| Zebrafish DNA sequence from clone CH211-255I3 in... 40 8.4
16gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 8.4
17emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 8.4
18emb|Z82993.1|ATZ82993 A.thaliana mRNA for FCA alpha 1 and alpha 2 40 8.4
19emb|Z82992.1|ATZ82992 A.thaliana FCA gene encoding FCA alpha, be... 40 8.4
20emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, ... 40 8.4
21gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, com... 40 8.4
22gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, comp... 40 8.4
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
24gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone m... 40 8.4
25gb|AC079462.2|AC079462 Homo sapiens X PAC GS1-554N22 (Roswell Pa... 40 8.4
26dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
27gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 ma... 40 8.4
28dbj|AK105991.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
29dbj|AK105877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
30emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 ma... 40 8.4
31emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-7... 40 8.4
32emb|AJ617740.1| Pseudomonas putida clc transposon 40 8.4
33emb|AL954327.12| Zebrafish DNA sequence from clone DKEY-18H14 in... 40 8.4
34emb|AL928959.9| Mouse DNA sequence from clone RP23-73I19 on chro... 40 8.4
35gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 8.4
36emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 8.4
37gb|U40455.1|HSU40455 Human chromosome X cosmid, clones 196B12, 9... 40 8.4
38gb|AC090053.5| Leishmania major strain Friedlin chromosome Unkno... 40 8.4

>ref|XM_469179.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1904

 Score =  220 bits (111), Expect = 4e-54
 Identities = 305/370 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306
            |||||||||||| || ||||| |||||||| ||||||||  |  | ||||| ||||| ||
Sbjct: 1623 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 1564

                                                                        
Query: 307  cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366
            |||||||||||||| ||||| |||||| |  || ||||||||||| ||||| || || ||
Sbjct: 1563 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 1504

                                                                        
Query: 367  cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426
            ||  || |||||||||||||| |  |||||| |||  || ||||| || |||||||| ||
Sbjct: 1503 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 1444

                                                                        
Query: 427  cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486
            ||||||||||||||| ||||| || ||| | ||  |||| || ||||| ||||| || ||
Sbjct: 1443 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 1384

                                                                        
Query: 487  actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546
            |||||| || || ||||| || ||||| || ||||| ||||||||||| ||||  |||||
Sbjct: 1383 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 1324

                                                                        
Query: 547  ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606
            |||||| |||| |||||||||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 1323 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 1264

                      
Query: 607  ttgttctctc 616
            ||| ||||||
Sbjct: 1263 ttgctctctc 1254



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 168  aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215
            ||||||||| |||||||||||||  ||| | | ||||||||||||||||
Sbjct: 1696 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 1648



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>dbj|AK102364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091J20, full
            insert sequence
          Length = 1905

 Score =  220 bits (111), Expect = 4e-54
 Identities = 305/370 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306
            |||||||||||| || ||||| |||||||| ||||||||  |  | ||||| ||||| ||
Sbjct: 1624 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 1565

                                                                        
Query: 307  cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366
            |||||||||||||| ||||| |||||| |  || ||||||||||| ||||| || || ||
Sbjct: 1564 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 1505

                                                                        
Query: 367  cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426
            ||  || |||||||||||||| |  |||||| |||  || ||||| || |||||||| ||
Sbjct: 1504 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 1445

                                                                        
Query: 427  cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486
            ||||||||||||||| ||||| || ||| | ||  |||| || ||||| ||||| || ||
Sbjct: 1444 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 1385

                                                                        
Query: 487  actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546
            |||||| || || ||||| || ||||| || ||||| ||||||||||| ||||  |||||
Sbjct: 1384 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 1325

                                                                        
Query: 547  ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606
            |||||| |||| |||||||||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 1324 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 1265

                      
Query: 607  ttgttctctc 616
            ||| ||||||
Sbjct: 1264 ttgctctctc 1255



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 168  aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215
            ||||||||| |||||||||||||  ||| | | ||||||||||||||||
Sbjct: 1697 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 1649



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  218 bits (110), Expect = 2e-53
 Identities = 304/369 (82%)
 Strand = Plus / Plus

                                                                            
Query: 247      aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306
                |||||||||||| || ||||| |||||||| ||||||||  |  | ||||| ||||| ||
Sbjct: 25921641 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 25921700

                                                                            
Query: 307      cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366
                |||||||||||||| ||||| |||||| |  || ||||||||||| ||||| || || ||
Sbjct: 25921701 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 25921760

                                                                            
Query: 367      cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426
                ||  || |||||||||||||| |  |||||| |||  || ||||| || |||||||| ||
Sbjct: 25921761 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 25921820

                                                                            
Query: 427      cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486
                ||||||||||||||| ||||| || ||| | ||  |||| || ||||| ||||| || ||
Sbjct: 25921821 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 25921880

                                                                            
Query: 487      actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546
                |||||| || || ||||| || ||||| || ||||| ||||||||||| ||||  |||||
Sbjct: 25921881 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 25921940

                                                                            
Query: 547      ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606
                |||||| |||| |||||||||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 25921941 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 25922000

                         
Query: 607      ttgttctct 615
                ||| |||||
Sbjct: 25922001 ttgctctct 25922009



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                                 
Query: 168      aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215
                ||||||||| |||||||||||||  ||| | | ||||||||||||||||
Sbjct: 25921568 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 25921616



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>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete
             sequence
          Length = 140720

 Score =  218 bits (110), Expect = 2e-53
 Identities = 304/369 (82%)
 Strand = Plus / Minus

                                                                         
Query: 247   aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306
             |||||||||||| || ||||| |||||||| ||||||||  |  | ||||| ||||| ||
Sbjct: 86279 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 86220

                                                                         
Query: 307   cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366
             |||||||||||||| ||||| |||||| |  || ||||||||||| ||||| || || ||
Sbjct: 86219 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 86160

                                                                         
Query: 367   cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426
             ||  || |||||||||||||| |  |||||| |||  || ||||| || |||||||| ||
Sbjct: 86159 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 86100

                                                                         
Query: 427   cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486
             ||||||||||||||| ||||| || ||| | ||  |||| || ||||| ||||| || ||
Sbjct: 86099 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 86040

                                                                         
Query: 487   actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546
             |||||| || || ||||| || ||||| || ||||| ||||||||||| ||||  |||||
Sbjct: 86039 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 85980

                                                                         
Query: 547   ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606
             |||||| |||| |||||||||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 85979 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 85920

                      
Query: 607   ttgttctct 615
             ||| |||||
Sbjct: 85919 ttgctctct 85911



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                              
Query: 168   aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215
             ||||||||| |||||||||||||  ||| | | ||||||||||||||||
Sbjct: 86352 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 86304



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  218 bits (110), Expect = 2e-53
 Identities = 304/369 (82%)
 Strand = Plus / Plus

                                                                            
Query: 247      aggccttcagggatgtgttgcccctccctgcatatgatcattggccggtggcgggttcac 306
                |||||||||||| || ||||| |||||||| ||||||||  |  | ||||| ||||| ||
Sbjct: 26012950 aggccttcaggggtgggttgcgcctccctggatatgatcgctcactggtggggggttgac 26013009

                                                                            
Query: 307      cacagggatatccaggctgctgccttccgcctccggggagacctcgcgcacgtcagcaat 366
                |||||||||||||| ||||| |||||| |  || ||||||||||| ||||| || || ||
Sbjct: 26013010 cacagggatatccaagctgccgccttctgattctggggagacctcccgcacatcggcgat 26013069

                                                                            
Query: 367      cagcgcctccgactgctggaagccgccccacaccgggtcgccgatggggcggatgtccac 426
                ||  || |||||||||||||| |  |||||| |||  || ||||| || |||||||| ||
Sbjct: 26013070 caatgcttccgactgctggaaactaccccactccgcatcaccgataggacggatgtcgac 26013129

                                                                            
Query: 427      cccatccacggccagctggacctccgtgctctcgctgganaccaggaccgatctcgaatc 486
                ||||||||||||||| ||||| || ||| | ||  |||| || ||||| ||||| || ||
Sbjct: 26013130 cccatccacggccagttggacttcagtgttatcattggaaactaggacagatcttgagtc 26013189

                                                                            
Query: 487      actcacgcacgccttgtccacgtcgtcgtccgatgcgtcgacgtgcttcgtcagcggagg 546
                |||||| || || ||||| || ||||| || ||||| ||||||||||| ||||  |||||
Sbjct: 26013190 actcacacaagctttgtcgacatcgtcatctgatgcatcgacgtgctttgtcaagggagg 26013249

                                                                            
Query: 547      ggagttgtcggcgccggagcatgactcggatctctcctcacatacttgcttcgtgctgct 606
                |||||| |||| |||||||||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 26013250 ggagttatcggtgccggagcatgattcagatctctcttcgcatacctgcttcgtgctgct 26013309

                         
Query: 607      ttgttctct 615
                ||| |||||
Sbjct: 26013310 ttgctctct 26013318



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                                 
Query: 168      aattctcgagaggattcaaatccttgtcag-tctcctcaataatcacaa 215
                ||||||||| |||||||||||||  ||| | | ||||||||||||||||
Sbjct: 26012877 aattctcgaaaggattcaaatcccagtcggttatcctcaataatcacaa 26012925



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>gb|AY104210.1| Zea mays PCO085619 mRNA sequence
          Length = 1982

 Score =  216 bits (109), Expect = 7e-53
 Identities = 288/348 (82%)
 Strand = Plus / Minus

                                                                        
Query: 269  cctccctgcatatgatcattggccggtggcgggttcaccacagggatatccaggctgctg 328
            |||||||| ||||||||| || | ||||| || || |||||||| ||||||| ||||| |
Sbjct: 1658 cctccctggatatgatcactgactggtgggggattgaccacaggaatatccaagctgccg 1599

                                                                        
Query: 329  ccttccgcctccggggagacctcgcgcacgtcagcaatcagcgcctccgactgctggaag 388
            || |||||||| ||||||||||| || || ||||| |||||||| || | ||||||||||
Sbjct: 1598 ccgtccgcctctggggagacctcccggacatcagcgatcagcgcttctggctgctggaag 1539

                                                                        
Query: 389  ccgccccacaccgggtcgccgatggggcggatgtccaccccatccacggccagctggacc 448
            |  | |||| | |  ||||| |  || |||||||||||||||||||| ||||||||||||
Sbjct: 1538 ctactccactctgcatcgccaacaggacggatgtccaccccatccacagccagctggacc 1479

                                                                        
Query: 449  tccgtgctctcgctgganaccaggaccgatctcgaatcactcacgcacgccttgtccacg 508
            || ||||| ||||| || ||| |||||||||| || ||||| ||||| || |||||||| 
Sbjct: 1478 tcagtgctatcgctcgaaaccgggaccgatctagagtcacttacgcaggctttgtccaca 1419

                                                                        
Query: 509  tcgtcgtccgatgcgtcgacgtgcttcgtcagcggaggggagttgtcggcgccggagcat 568
            || ||||| |||||||| || ||||| |||| | |||| || || |||||||| ||||||
Sbjct: 1418 tcatcgtctgatgcgtcaacatgctttgtcaacagaggtgaattatcggcgcctgagcat 1359

                                                            
Query: 569  gactcggatctctcctcacatacttgcttcgtgctgctttgttctctc 616
            || || || |||||||| ||||||||||| |||||||| || ||||||
Sbjct: 1358 gattcagacctctcctcgcatacttgctttgtgctgctctgctctctc 1311



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>gb|DQ167769.1| Drosophila erecta putative Oxysterol binding protein (Osbp) gene,
           exons 1, 2 and partial cds
          Length = 2054

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 495 acgccttgtccacgtcgtcgtc 516
           ||||||||||||||||||||||
Sbjct: 775 acgccttgtccacgtcgtcgtc 754



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 382     ctggaagccgccccacaccgg 402
               |||||||||||||||||||||
Sbjct: 2511632 ctggaagccgccccacaccgg 2511612



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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     cggggagacctcgcgcacgtc 360
               |||||||||||||||||||||
Sbjct: 1665674 cggggagacctcgcgcacgtc 1665654



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>gb|AC020646.2|AC020646 Genomic sequence for Arabidopsis thaliana BAC T32E20 from chromosome I,
             complete sequence
          Length = 103931

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    caaaccgctatcatcttttattgag 94
             ||||||| |||||||||||||||||
Sbjct: 52229 caaaccggtatcatcttttattgag 52253



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>ref|NM_179211.1| Arabidopsis thaliana FCA (FCA); RNA binding AT4G16280 (FCA)
            transcript variant AT4G16280.1 mRNA, complete cds
          Length = 4732

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  atcacaagccatccaagaaa 228
            ||||||||||||||||||||
Sbjct: 1717 atcacaagccatccaagaaa 1698



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>ref|XM_467836.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1393

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 328 gccttccgcctccggggagacctcgcgc 355
           |||||||||||||| || ||||||||||
Sbjct: 669 gccttccgcctccgcggcgacctcgcgc 696



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>ref|XM_506975.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1288_G09.10
           mRNA
          Length = 1654

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 328 gccttccgcctccggggagacctcgcgc 355
           |||||||||||||| || ||||||||||
Sbjct: 911 gccttccgcctccgcggcgacctcgcgc 938



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>gb|AC121598.3| Mus musculus BAC clone RP23-300F10 from chromosome 15, complete
             sequence
          Length = 189823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    tatcatcttttattgagttg 97
             ||||||||||||||||||||
Sbjct: 99303 tatcatcttttattgagttg 99284



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>emb|CR626886.6| Zebrafish DNA sequence from clone CH211-255I3 in linkage group 16,
             complete sequence
          Length = 165396

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ttgtcagtctcctcaataat 210
             ||||||||||||||||||||
Sbjct: 54024 ttgtcagtctcctcaataat 54005



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 346     gacctcgcgcacgtcagcaatcagcgcctccg 377
               ||||||||||| | ||| ||||||||||||||
Sbjct: 3606847 gacctcgcgcatgccaggaatcagcgcctccg 3606816



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>emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5
          Length = 209164

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    atcacaagccatccaagaaa 228
              ||||||||||||||||||||
Sbjct: 179426 atcacaagccatccaagaaa 179445



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>emb|Z82993.1|ATZ82993 A.thaliana mRNA for FCA alpha 1 and alpha 2
          Length = 5113

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  atcacaagccatccaagaaa 228
            ||||||||||||||||||||
Sbjct: 1718 atcacaagccatccaagaaa 1699



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>emb|Z82992.1|ATZ82992 A.thaliana FCA gene encoding FCA alpha, beta, gamma and delta
          Length = 9763

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  atcacaagccatccaagaaa 228
            ||||||||||||||||||||
Sbjct: 3177 atcacaagccatccaagaaa 3158



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>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43
          Length = 198226

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    atcacaagccatccaagaaa 228
              ||||||||||||||||||||
Sbjct: 148416 atcacaagccatccaagaaa 148435



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>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence
          Length = 166581

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 96     tgcatacttaaatacaacggacacacaa 123
              |||||||||||| |||||| ||||||||
Sbjct: 166040 tgcatacttaaacacaacgcacacacaa 166013



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>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence
          Length = 171080

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 96    tgcatacttaaatacaacggacacacaa 123
             |||||||||||| |||||| ||||||||
Sbjct: 96259 tgcatacttaaacacaacgcacacacaa 96286



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 328      gccttccgcctccggggagacctcgcgc 355
                |||||||||||||| || ||||||||||
Sbjct: 31668157 gccttccgcctccgcggcgacctcgcgc 31668184



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>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete
             sequence
          Length = 126143

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 96    tgcatacttaaatacaacggacacacaa 123
             |||||||||||| |||||| ||||||||
Sbjct: 65196 tgcatacttaaacacaacgcacacacaa 65169



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>gb|AC079462.2|AC079462 Homo sapiens X PAC GS1-554N22 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 77050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    gacaaaccgctatcatcttt 87
             ||||||||||||||||||||
Sbjct: 50604 gacaaaccgctatcatcttt 50585



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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_G09
          Length = 109672

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 328   gccttccgcctccggggagacctcgcgc 355
             |||||||||||||| || ||||||||||
Sbjct: 47944 gccttccgcctccgcggcgacctcgcgc 47971



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>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence
          Length = 117052

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 96    tgcatacttaaatacaacggacacacaa 123
             |||||||||||| |||||| ||||||||
Sbjct: 17180 tgcatacttaaacacaacgcacacacaa 17207



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>dbj|AK105991.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H01, full
           insert sequence
          Length = 1393

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 328 gccttccgcctccggggagacctcgcgc 355
           |||||||||||||| || ||||||||||
Sbjct: 669 gccttccgcctccgcggcgacctcgcgc 696



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>dbj|AK105877.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C05, full
           insert sequence
          Length = 1654

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 328 gccttccgcctccggggagacctcgcgc 355
           |||||||||||||| || ||||||||||
Sbjct: 911 gccttccgcctccgcggcgacctcgcgc 938



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>emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 map Xq28, complete sequence
          Length = 199100

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     gacaaaccgctatcatcttt 87
              ||||||||||||||||||||
Sbjct: 167064 gacaaaccgctatcatcttt 167083



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>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192387

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   attcaaatccttgtcagtct 200
             ||||||||||||||||||||
Sbjct: 67970 attcaaatccttgtcagtct 67951



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>emb|AJ617740.1| Pseudomonas putida clc transposon
          Length = 105027

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 346   gacctcgcgcacgtcagcaatcagcgcctccg 377
             ||||||||||| | ||| ||||||||||||||
Sbjct: 57270 gacctcgcgcatgccaggaatcagcgcctccg 57301



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>emb|AL954327.12| Zebrafish DNA sequence from clone DKEY-18H14 in linkage group 16,
            complete sequence
          Length = 237124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ttgtcagtctcctcaataat 210
            ||||||||||||||||||||
Sbjct: 5969 ttgtcagtctcctcaataat 5988



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>emb|AL928959.9| Mouse DNA sequence from clone RP23-73I19 on chromosome 2, complete
              sequence
          Length = 143937

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    cacaaaagtaattctcgaga 178
              ||||||||||||||||||||
Sbjct: 132019 cacaaaagtaattctcgaga 132000



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>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete
              sequence
          Length = 189517

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 96     tgcatacttaaatacaacggacacacaa 123
              |||||||||||| |||||| ||||||||
Sbjct: 175999 tgcatacttaaacacaacgcacacacaa 176026



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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aatttacaatcacacgacaa 72
             ||||||||||||||||||||
Sbjct: 69165 aatttacaatcacacgacaa 69146



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>gb|U40455.1|HSU40455 Human chromosome X cosmid, clones 196B12, 9H11 and 43H9, repeat units
             and sequence tagged sites
          Length = 106000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    gacaaaccgctatcatcttt 87
             ||||||||||||||||||||
Sbjct: 48763 gacaaaccgctatcatcttt 48744



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>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323,
             complete sequence
          Length = 66637

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   ccgatggggcggatgtccac 426
             ||||||||||||||||||||
Sbjct: 41997 ccgatggggcggatgtccac 41978


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,032,187
Number of Sequences: 3902068
Number of extensions: 4032187
Number of successful extensions: 71920
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71669
Number of HSP's gapped (non-prelim): 241
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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