ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2i17 |
|---|---|
| Clone Library Name | barley_pub |
>PLSB_HUMAN (Q9HCL2) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) Length = 828 Score = 34.7 bits (78), Expect = 0.11 Identities = 24/85 (28%), Positives = 37/85 (43%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNAGCRDEGHPR*LLDTIEYSAMYHFHSAVALSIFN 171 +QE + EL PDG A + +A N + + AM V L +FN Sbjct: 139 VQEAIAEVAAELNPDGSAQQQSKAVNKVKKKAKRILQEMVATVSPAMIRLTGWVLLKLFN 198 Query: 170 SFY*ILQIHRLSLGLVRMGSTCMFP 96 SF+ +QIH+ L +V+ + P Sbjct: 199 SFFWNIQIHKGQLEMVKAATETNLP 223
>PLSB_MOUSE (Q61586) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) (P90) Length = 827 Score = 31.6 bits (70), Expect = 0.89 Identities = 23/85 (27%), Positives = 35/85 (41%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNAGCRDEGHPR*LLDTIEYSAMYHFHSAVALSIFN 171 +QE + EL PDG A + +A R + M V L +FN Sbjct: 139 VQEAIAEVAAELNPDGSAQQQSKAIQKVKRKARKILQEMVATVSPGMIRLTGWVLLKLFN 198 Query: 170 SFY*ILQIHRLSLGLVRMGSTCMFP 96 SF+ +QIH+ L +V+ + P Sbjct: 199 SFFWNIQIHKGQLEMVKAATETNLP 223
>PLSB_RAT (P97564) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) Length = 828 Score = 31.6 bits (70), Expect = 0.89 Identities = 23/85 (27%), Positives = 35/85 (41%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNAGCRDEGHPR*LLDTIEYSAMYHFHSAVALSIFN 171 +QE + EL PDG A + +A R + M V L +FN Sbjct: 139 VQEAIAEVAAELNPDGSAQQQSKAIQKVKRKARKILQEMVATVSPGMIRLTGWVLLKLFN 198 Query: 170 SFY*ILQIHRLSLGLVRMGSTCMFP 96 SF+ +QIH+ L +V+ + P Sbjct: 199 SFFWNIQIHKGQLEMVKAATETNLP 223
>XISC_ANASP (Q44217) Excisase C (HupL element site-specific recombinase)| Length = 498 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = -1 Query: 433 IDKSIGAMYRRLQKTLTSDELFPSLWDKCKKEF----LDKYESFVQMVTRIYGNE 281 +DK Y+ QKT+TS FP+ K+ F L E+F +++ + GN+ Sbjct: 169 LDKFEEKYYQTRQKTITSQNTFPNYISVIKRNFPLTHLATKENFEEIINSVQGNK 223
>NU2M_CHLRE (P08740) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 382 Score = 30.4 bits (67), Expect = 2.0 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = -1 Query: 217 AQCIIFTVPWPYLYSIHSIEFCRFIAFL*ALLG--WVLHVCFLVKLYVCVTDFCIEMDVS 44 A CI+ V L S HS E F+ L A +G +++H C LV YVC+ + + V Sbjct: 51 ALCILTVV---LLQSFHSFEALLFL--LLAYIGQLYMMHSCNLVSFYVCLEAQTLCVVVL 105 Query: 43 CCLL 32 C LL Sbjct: 106 CGLL 109
>ERA_STRR6 (P0A3C4) GTP-binding protein era homolog| Length = 299 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 427 KSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDK 326 K IG+M RR + + D++F W K KK + DK Sbjct: 252 KKIGSMARRDIELMLGDKVFLETWVKVKKNWRDK 285
>ERA_STRPN (P0A3C3) GTP-binding protein era homolog| Length = 299 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 427 KSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDK 326 K IG+M RR + + D++F W K KK + DK Sbjct: 252 KKIGSMARRDIELMLGDKVFLETWVKVKKNWRDK 285
>ERA_STRGC (O24756) GTP-binding protein era homolog| Length = 299 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 427 KSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDK 326 K IG+M RR + + D++F W K KK + DK Sbjct: 252 KKIGSMARRDIELMLGDKVFLETWVKVKKNWRDK 285
>PIPNA_RAT (P16446) Phosphatidylinositol transfer protein alpha isoform| (PtdIns transfer protein alpha) (PtdInsTP) (PI-TP-alpha) Length = 270 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNA 270 +Q +VP VR L P+G ++ E+A+NA Sbjct: 64 LQSKVPTFVRMLAPEGALNIHEKAWNA 90
>PIPNA_MOUSE (P53810) Phosphatidylinositol transfer protein alpha isoform| (PtdIns transfer protein alpha) (PtdInsTP) (PI-TP-alpha) Length = 270 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNA 270 +Q +VP VR L P+G ++ E+A+NA Sbjct: 64 LQSKVPTFVRMLAPEGALNIHEKAWNA 90
>PIPNA_RABIT (P48738) Phosphatidylinositol transfer protein alpha isoform| (PtdIns transfer protein alpha) (PtdInsTP) (PI-TP-alpha) Length = 269 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNA 270 +Q +VP VR L P+G ++ E+A+NA Sbjct: 63 LQSKVPTFVRMLAPEGALNIHEKAWNA 89
>PIPNA_HUMAN (Q00169) Phosphatidylinositol transfer protein alpha isoform| (PtdIns transfer protein alpha) (PtdInsTP) (PI-TP-alpha) Length = 269 Score = 29.3 bits (64), Expect = 4.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 350 MQERVPGQVRELCPDGDADLRERAYNA 270 +Q +VP VR L P+G ++ E+A+NA Sbjct: 63 LQSKVPTFVRMLAPEGALNIHEKAWNA 89
>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)| Length = 2025 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -1 Query: 364 SLWDKCKKEFLDKYESFVQMVTRIYGNEPIMPVAEMRDTL 245 S+ D+ + D SF+Q +TR+Y N+P V+ DTL Sbjct: 1472 SVVDQIDPKSRDSTYSFLQPLTRLYQNKPYEIVSPKTDTL 1511
>SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 27 VRNRQQLTSISIQKSVTHTYNLTRKHTCRTHPNK 128 V+ R L S ++ S+ TYNL+ ++C HP K Sbjct: 213 VKRRYMLASPNVT-SILLTYNLSNTNSCNVHPKK 245
>SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 27 VRNRQQLTSISIQKSVTHTYNLTRKHTCRTHPNK 128 V+ R L S ++ S+ TYNL+ ++C HP K Sbjct: 213 VKRRYMLASPNVT-SILLTYNLSNTNSCNVHPKK 245
>GLMS_LEPIN (Q8EZQ1) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 609 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -1 Query: 394 KTLTSDELFPSLWDKCKKEFLDKYESFVQMVTRIYGNEPIMPVAE 260 ++LT E+ P L ++ KK +SF+++ +I+G I V E Sbjct: 120 QSLTDTEVLPHLLEESKKNGKSNKDSFLELFGKIHGKWAISSVFE 164
>GLMS_LEPIC (Q72V57) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 609 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -1 Query: 394 KTLTSDELFPSLWDKCKKEFLDKYESFVQMVTRIYGNEPIMPVAE 260 ++LT E+ P L ++ KK +SF+++ +I+G I V E Sbjct: 120 QSLTDTEVLPHLLEESKKNGKSNKDSFLELFGKIHGKWAISSVFE 164
>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein) (Xatr) Length = 2654 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -2 Query: 249 PSLASRYN*VQRNVSFSQCRGPIYIQFILLNFADSS 142 P L +RY ++ V++S+ + PIY+ + NFAD S Sbjct: 1471 PHLNTRYKSSRKAVNWSRVKKPIYLSKLGNNFADWS 1506
>CAT2_CLOPE (P26826) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 207 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = -1 Query: 376 ELFPSLWDKCK---KEFLDKYESFVQMVTRIYGN 284 E F SLW +CK K FL YES Q YGN Sbjct: 92 ETFSSLWTECKSDFKSFLADYESDTQR----YGN 121
>CAT_CLODI (P11504) Chloramphenicol acetyltransferase (EC 2.3.1.28) (CAT)| Length = 212 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = -1 Query: 376 ELFPSLWDKCK---KEFLDKYESFVQMVTRIYGN 284 E F SLW +CK K FL YES Q YGN Sbjct: 92 ETFSSLWTECKSDFKSFLADYESDTQR----YGN 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,443,420 Number of Sequences: 219361 Number of extensions: 1290931 Number of successful extensions: 3149 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3149 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
