>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25|
          Length = 520

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 580 GSLHLKVMYHPFTKEEQLEALESEKKAIEERKRLKE 473
           G L+ K  +HP  +  Q    + EK+A+EERK+L+E
Sbjct: 96  GDLNTKKSWHPLLQVNQERVWKREKEALEERKKLEE 131

>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25|
          Length = 447

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 580 GSLHLKVMYHPFTKEEQLEALESEKKAIEERKRLKE 473
           G L+LK  +HP     Q      EK+A+EERKR+++
Sbjct: 3   GDLNLKKSWHPSLLRNQERVWAEEKRALEERKRIEQ 38

>CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25|
          Length = 393

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 580 GSLHLKVMYHPFTKEEQLEALESEKKAIEERKRLKE 473
           G L+LK  +HP  +  Q    + E+KA+ ERKR ++
Sbjct: 4   GDLNLKKSFHPALRRNQQAVWDEEQKALAERKRTQQ 39

>CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25|
          Length = 415

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 580 GSLHLKVMYHPFTKEEQLEALESEKKAIEERKRLKE 473
           G L+LK  +HP     Q      EK+A+EERKR+ +
Sbjct: 3   GDLNLKKSWHPSLLRNQERVWAEEKRALEERKRIDQ 38

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -3

Query: 580 GSLHLKVMYHPFTKEEQLEALESEKKAIEERKRLKE 473
           G L+LK  +HP   + Q      E++A+EER+R++E
Sbjct: 3   GDLNLKKSWHPGLHKNQAVVHAKEQEALEERRRIQE 38

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 325 QNLPDQRQHQALSPRAQHP-RQRQCPQIQHLNQLVKRRHQVHPSC 456
           Q L  Q+Q Q LSP++Q P  Q Q  Q+Q L  L  + HQ   SC
Sbjct: 755 QRLQQQQQQQFLSPQSQLPHHQLQSQQLQQLPTL-SQGHQFPSSC 798

>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive|
           element-binding protein) (SPRE-binding protein) (Nuclear
           factor SPBP)
          Length = 1983

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 319 QYQNLPDQRQHQALSPRAQHPRQRQCPQIQHLNQLVKRRHQVHP 450
           QYQ     +Q Q    + Q  +Q+Q  Q+Q L Q + + HQ  P
Sbjct: 165 QYQQQASSQQQQQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLP 208

>DHH1_CANAL (Q5AAW3) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 549

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 301 GRCPRRQYQNLPDQRQHQALSPRAQHP-RQRQCPQIQH 411
           G   ++Q Q  P Q+Q Q+ SP  Q P +Q+Q P  QH
Sbjct: 444 GSSSQQQQQPPPQQQQQQSTSPPQQQPQQQQQQPNPQH 481

>LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp|
          Length = 657

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +1

Query: 232 YHSYEICPSALSQSSP*TSQLYQGRCPRRQYQNLPDQRQHQALSPRAQHPRQRQCPQIQH 411
           Y S ++     SQ +P  S +        Q Q    Q QHQ      QH +Q Q  Q QH
Sbjct: 149 YFSEQLAAEQFSQYAPTASPIPPAATTLHQQQQ---QLQHQQQQQYQQHQQQLQQQQHQH 205

Query: 412 LNQLVKRRHQVHP 450
            + L +++  + P
Sbjct: 206 QHYLQQQQQTLPP 218

>FEN_SULAC (Q4JAN1) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 349

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -3

Query: 640 ITLKLMQSLDSLKIKDYRDRGSLHLKVMYHPFTKEEQLEALESEKKAIEERKRLKE 473
           IT ++ +  + L++ +  +R  + L V  H F ++     +E  KKAI+E K +++
Sbjct: 286 ITPEVKKPTERLELAECNEREIIELLVKNHDFNEDRVNNGIERLKKAIKEAKSVEK 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,763,172
Number of Sequences: 219361
Number of extensions: 1483871
Number of successful extensions: 6071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6053
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)