ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39p24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477665.1| Oryza sativa (japonica cultivar-group), mRNA 208 2e-50
2dbj|AK060230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 2e-50
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
4dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5gb|AY105616.1| Zea mays PCO125437 mRNA sequence 96 2e-16
6gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, comp... 46 0.14
7gb|AC131103.4| Mus musculus BAC clone RP23-213K14 from chromosom... 46 0.14
8gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosom... 46 0.14
9gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, com... 46 0.14
10emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chr... 46 0.14
11gb|BC106195.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA c... 44 0.56
12ref|NM_001013773.1| Mus musculus cDNA sequence BC055004 (BC05500... 44 0.56
13gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome... 44 0.56
14gb|BC055004.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA c... 44 0.56
15ref|XM_979444.1| PREDICTED: Mus musculus gene model 454, (NCBI) ... 44 0.56
16ref|XM_984193.1| PREDICTED: Mus musculus gene model 454, (NCBI) ... 44 0.56
17ref|XM_001000527.1| PREDICTED: Mus musculus gene model 454, (NCB... 44 0.56
18gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ... 44 0.56
19dbj|AK138922.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.56
20dbj|AK156114.1| Mus musculus activated spleen cDNA, RIKEN full-l... 44 0.56
21dbj|AK154713.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 44 0.56
22dbj|AK171365.1| Mus musculus B6-derived CD11 +ve dendritic cells... 44 0.56
23gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, ... 44 0.56
24emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 44 0.56
25gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome... 42 2.2
26gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete... 42 2.2
27gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complet... 42 2.2
28gb|AC140734.5| Rattus norvegicus BAC CH230-55I15 (Children's Ho... 42 2.2
29gb|AC154198.3| Mus musculus BAC clone RP24-393P24 from chromosom... 42 2.2
30gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome ... 42 2.2
31gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, comple... 42 2.2
32gb|AY067317.1| Schmidtea mediterranea clone HB.4.1f unknown mRNA... 42 2.2
33gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, co... 40 8.8
34gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, co... 40 8.8
35gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.8
36gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 8.8
37gb|AC151763.1| Ornithorhynchus anatinus BAC clone OABb-433P24 fr... 40 8.8
38gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 8.8
39emb|CR933526.10| Zebrafish DNA sequence from clone DKEY-208P7 in... 40 8.8
40gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome... 40 8.8
41gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CI... 40 8.8
42gb|AC003044.1| Homo sapiens PAC clone RP5-1055C4 from 7, complet... 40 8.8
43gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, compl... 40 8.8
44gb|AC146549.8| Medicago truncatula clone mth2-7p18, complete seq... 40 8.8
45emb|AL365271.10| Human DNA sequence from clone RP11-307P5 on chr... 40 8.8
46gb|AY325900.1| Pseudomonas syringae pv. maculicola RpoN gene, pa... 40 8.8
47emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chr... 40 8.8
48gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, com... 40 8.8
49gb|AF538690.1| Pseudomonas alcaligenes sigma 54 (rpoN) gene, par... 40 8.8
50emb|X16474.1|PPRPONS P.putida rpoN gene for sigma Factor 40 8.8
51gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosom... 40 8.8
52emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN opero... 40 8.8
53gb|BC036427.1| Homo sapiens cDNA clone IMAGE:4799216 40 8.8
54gb|BC047626.1| Homo sapiens cDNA clone IMAGE:4796028 40 8.8
55gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 8.8
56gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, comp... 40 8.8
57gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 8.8
58gb|AC087533.7| Homo sapiens, clone RP11-89A4, complete sequence 40 8.8
59gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Canc... 40 8.8
60dbj|AK164353.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 8.8
61gb|AF283815.1|AF283815 Pseudomonas syringae pv. glycinea transcr... 40 8.8
62emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chr... 40 8.8
63gb|AY341911.1| Pseudomonas fluorescens probable ATP-binding comp... 40 8.8
64gb|AC010613.6| Homo sapiens chromosome 5 clone CTB-96J19, comple... 40 8.8
65gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 8.8
66gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromoso... 40 8.8
67gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, com... 40 8.8
68gb|AC104655.4| Homo sapiens BAC clone RP11-383P6 from 2, complet... 40 8.8
69gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 o... 40 8.8
70gb|AC175706.2| Mus musculus BAC clone RP24-307B22 from chromosom... 40 8.8
71gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, comp... 40 8.8
72gb|AF199600.1|AF199600 Pseudomonas syringae pv. maculicola alter... 40 8.8
73gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, co... 40 8.8
74emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.8
75emb|CT033781.12| Mouse DNA sequence from clone RP24-85H21 on chr... 40 8.8
76gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.8
77emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on ch... 40 8.8
78emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 8.8
79gb|M24916.1|PSENTRAA P.putida sigma factor (ntrA) gene, complete... 40 8.8
80gb|L26916.1|PSERPON Pseudomonas aeruginosa (rpoN) gene, complete... 40 8.8
81dbj|D42111.1|TOBBY2 Tobacco mRNA 40 8.8
82dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 8.8 
>ref|XM_477665.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1962

 Score =  208 bits (105), Expect = 2e-50
 Identities = 252/301 (83%)
 Strand = Plus / Minus

                                                                        
Query: 345  ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 404
            ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 1513 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 1454

                                                                        
Query: 405  ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 464
            |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 1453 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 1394

                                                                        
Query: 465  accccagcctccttcagccgctttctctcctctattgctttcttttctgactccagggct 524
            |||||||||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||
Sbjct: 1393 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactctagggct 1334

                                                                        
Query: 525  tccagttgttcttccttggtaaatggatgatacatgaccttaagatgcagtgatcctcta 584
            ||||  ||||||||||| | |||||| |||||  |||||| |||||| | || |||||||
Sbjct: 1333 tccatctgttcttcctttgaaaatgggtgatatgtgacctgaagatgtaatgttcctcta 1274

                                                                        
Query: 585  tccctgtagtctttaatcttgagtgaatctagtgactgcataagcttcagagtgatttca 644
            ||| ||  ||| ||||| || || ||||||||||| |||  ||| |||| ||||||||||
Sbjct: 1273 tccttggtgtccttaattttaagagaatctagtgattgctgaagtttcaaagtgatttca 1214

             
Query: 645  c 645
            |
Sbjct: 1213 c 1213



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 176  tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 235
            |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 1703 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 1644

                                                                        
Query: 236  actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 295
              |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 1643 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 1584

                                                
Query: 296  accaaggccgctgcccacggcgccaataccagaacc 331
            ||| ||||||||||| || ||||||||||| |||||
Sbjct: 1583 accgaggccgctgccgacagcgccaatacccgaacc 1548
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>dbj|AK060230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H02, full
            insert sequence
          Length = 1967

 Score =  208 bits (105), Expect = 2e-50
 Identities = 252/301 (83%)
 Strand = Plus / Minus

                                                                        
Query: 345  ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 404
            ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 1511 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 1452

                                                                        
Query: 405  ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 464
            |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 1451 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 1392

                                                                        
Query: 465  accccagcctccttcagccgctttctctcctctattgctttcttttctgactccagggct 524
            |||||||||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||
Sbjct: 1391 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactctagggct 1332

                                                                        
Query: 525  tccagttgttcttccttggtaaatggatgatacatgaccttaagatgcagtgatcctcta 584
            ||||  ||||||||||| | |||||| |||||  |||||| |||||| | || |||||||
Sbjct: 1331 tccatctgttcttcctttgaaaatgggtgatatgtgacctgaagatgtaatgttcctcta 1272

                                                                        
Query: 585  tccctgtagtctttaatcttgagtgaatctagtgactgcataagcttcagagtgatttca 644
            ||| ||  ||| ||||| || || ||||||||||| |||  ||| |||| ||||||||||
Sbjct: 1271 tccttggtgtccttaattttaagagaatctagtgattgctgaagtttcaaagtgatttca 1212

             
Query: 645  c 645
            |
Sbjct: 1211 c 1211



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 176  tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 235
            |||||||||||||||| | |||||||| || ||||  |||||| | || |||||||||||
Sbjct: 1701 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagccgttgagctgctacc 1642

                                                                        
Query: 236  actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 295
              |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 1641 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 1582

                                                
Query: 296  accaaggccgctgcccacggcgccaataccagaacc 331
            ||| ||||||||||| || ||||||||||| |||||
Sbjct: 1581 accgaggccgctgccgacagcgccaatacccgaacc 1546
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  174 bits (88), Expect = 2e-40
 Identities = 181/212 (85%)
 Strand = Plus / Minus

                                                                            
Query: 345      ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 404
                ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 12706625 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 12706566

                                                                            
Query: 405      ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 464
                |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 12706565 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 12706506

                                                                            
Query: 465      accccagcctccttcagccgctttctctcctctattgctttcttttctgactccagggct 524
                |||||||||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||
Sbjct: 12706505 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactctagggct 12706446

                                                
Query: 525      tccagttgttcttccttggtaaatggatgata 556
                ||||  ||||||||||| | |||||| |||||
Sbjct: 12706445 tccatctgttcttcctttgaaaatgggtgata 12706414



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                            
Query: 176      tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 235
                |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 12706815 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 12706756

                                                                            
Query: 236      actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 295
                  |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 12706755 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 12706696

                                                    
Query: 296      accaaggccgctgcccacggcgccaataccagaacc 331
                ||| ||||||||||| || ||||||||||| |||||
Sbjct: 12706695 accgaggccgctgccgacagcgccaatacccgaacc 12706660



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                            
Query: 561      accttaagatgcagtgatcctctatccctgtagtctttaatcttgagtgaatctagtgac 620
                |||| |||||| | || |||||||||| ||  ||| ||||| || || ||||||||||| 
Sbjct: 12704441 acctgaagatgtaatgttcctctatccttggtgtccttaattttaagagaatctagtgat 12704382

                                         
Query: 621      tgcataagcttcagagtgatttcac 645
                |||  ||| |||| |||||||||||
Sbjct: 12704381 tgctgaagtttcaaagtgatttcac 12704357
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>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0492E07
          Length = 143794

 Score =  174 bits (88), Expect = 2e-40
 Identities = 181/212 (85%)
 Strand = Plus / Minus

                                                                         
Query: 345   ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 404
             ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 81095 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 81036

                                                                         
Query: 405   ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 464
             |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 81035 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 80976

                                                                         
Query: 465   accccagcctccttcagccgctttctctcctctattgctttcttttctgactccagggct 524
             |||||||||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||
Sbjct: 80975 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactctagggct 80916

                                             
Query: 525   tccagttgttcttccttggtaaatggatgata 556
             ||||  ||||||||||| | |||||| |||||
Sbjct: 80915 tccatctgttcttcctttgaaaatgggtgata 80884



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                         
Query: 176   tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 235
             |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 81285 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 81226

                                                                         
Query: 236   actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 295
               |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 81225 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 81166

                                                 
Query: 296   accaaggccgctgcccacggcgccaataccagaacc 331
             ||| ||||||||||| || ||||||||||| |||||
Sbjct: 81165 accgaggccgctgccgacagcgccaatacccgaacc 81130



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                         
Query: 561   accttaagatgcagtgatcctctatccctgtagtctttaatcttgagtgaatctagtgac 620
             |||| |||||| | || |||||||||| ||  ||| ||||| || || ||||||||||| 
Sbjct: 78911 acctgaagatgtaatgttcctctatccttggtgtccttaattttaagagaatctagtgat 78852

                                      
Query: 621   tgcataagcttcagagtgatttcac 645
             |||  ||| |||| |||||||||||
Sbjct: 78851 tgctgaagtttcaaagtgatttcac 78827
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>gb|AY105616.1| Zea mays PCO125437 mRNA sequence
          Length = 968

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                       
Query: 444 gcatccatcgtgctgccaattaccccagcctccttcagccgctttctctcctctattgct 503
           |||||||| ||||| ||||||| ||||||||||||||| ||||| ||||||||||| |||
Sbjct: 578 gcatccattgtgctaccaattatcccagcctccttcagacgcttcctctcctctatggct 519

                                                                       
Query: 504 ttcttttctgactccagggcttccagttgttcttccttggtaaatggatgatacatgacc 563
           |  |||||   ||| ||||||||||| || |||||||| ||||| || || ||| | |||
Sbjct: 518 tgtttttccatctctagggcttccagctgctcttcctttgtaaaggggtggtactttacc 459

                   
Query: 564 ttaagatg 571
           ||||||||
Sbjct: 458 ttaagatg 451



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 134/163 (82%)
 Strand = Plus / Minus

                                                                       
Query: 259 gccctgtcacagtcctccccatgaacttcccagctttaccaaggccgctgcccacggcgc 318
           |||||||||||||||| |||||||||||||| |||||||||||||| ||||  || || |
Sbjct: 742 gccctgtcacagtcctgcccatgaacttcccggctttaccaaggccactgctgacagcac 683

                                                                       
Query: 319 caataccagaacctaccagaccagcgccagcaccaagccctgagcccacgagcccaacac 378
           ||||||||||    || || || |||||||||||||  ||||| || ||||  || |  |
Sbjct: 682 caataccagaggtaacaaggcctgcgccagcaccaattcctgaaccaacgaaaccgaggc 623

                                                      
Query: 379 ccccggcaacgccagtgcccacaaatccaacacctgaaccaac 421
           |  || ||| |||||| ||||||||||||||||| ||||||||
Sbjct: 622 cagcgccaatgccagtacccacaaatccaacaccagaaccaac 580
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>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence
          Length = 289751

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 483   cgctttctctcctctattgctttcttttctg 513
             |||||| |||| |||||||||||||||||||
Sbjct: 75851 cgctttgtctcatctattgctttcttttctg 75821
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>gb|AC131103.4| Mus musculus BAC clone RP23-213K14 from chromosome 19, complete
             sequence
          Length = 210370

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 486   tttctctcctctattgctttcttttct 512
             ||||||||||||||| |||||||||||
Sbjct: 62336 tttctctcctctatttctttcttttct 62362
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>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete sequence
          Length = 158695

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 490    tctcctctattgctttcttttct 512
              |||||||||||||||||||||||
Sbjct: 148178 tctcctctattgctttcttttct 148200
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>gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, complete sequence
          Length = 190980

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 486    tttctctcctctattgctttcttttct 512
              ||||||||||||||| |||||||||||
Sbjct: 169648 tttctctcctctatttctttcttttct 169674
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>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete
             sequence
          Length = 211056

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 483   cgctttctctcctctattgctttcttttctg 513
             |||||| |||| |||||||||||||||||||
Sbjct: 31740 cgctttgtctcatctattgctttcttttctg 31770
to top
>gb|BC106195.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA clone MGC:118496
           IMAGE:6396133), complete cds
          Length = 3378

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 444 agaaggctggtcaggttgggga 423
to top
>ref|NM_001013773.1| Mus musculus cDNA sequence BC055004 (BC055004), mRNA
          Length = 2596

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 262 agaaggctggtcaggttgggga 241
to top
>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete sequence
          Length = 202099

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 197    agaaggctggtcaggttgggga 218
              ||||||||||||||||||||||
Sbjct: 145959 agaaggctggtcaggttgggga 145938



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 197    agaaggctggtcaggttgggga 218
              ||||||||||||||||||||||
Sbjct: 110631 agaaggctggtcaggttgggga 110652
to top
>gb|BC055004.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA clone MGC:57066
           IMAGE:6478735), complete cds
          Length = 2596

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 262 agaaggctggtcaggttgggga 241
to top
>ref|XM_979444.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1387

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 317 agaaggctggtcaggttgggga 296
to top
>ref|XM_984193.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 164 agaaggctggtcaggttgggga 143
to top
>ref|XM_001000527.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 164 agaaggctggtcaggttgggga 143
to top
>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence
          Length = 220137

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 197    agaaggctggtcaggttgggga 218
              ||||||||||||||||||||||
Sbjct: 191512 agaaggctggtcaggttgggga 191491



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 197    agaaggctggtcaggttgggga 218
              ||||||||||||||||||||||
Sbjct: 156184 agaaggctggtcaggttgggga 156205
to top
>dbj|AK138922.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530006K22 product:hypothetical
           protein, full insert sequence
          Length = 754

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 317 agaaggctggtcaggttgggga 296
to top
>dbj|AK156114.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830008F20 product:hypothetical protein,
           full insert sequence
          Length = 2381

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 197 agaaggctggtcaggttgggga 218
           ||||||||||||||||||||||
Sbjct: 648 agaaggctggtcaggttgggga 627
to top
>dbj|AK154713.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630104E04
            product:hypothetical protein, full insert sequence
          Length = 1554

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 197  agaaggctggtcaggttgggga 218
            ||||||||||||||||||||||
Sbjct: 1255 agaaggctggtcaggttgggga 1234
to top
>dbj|AK171365.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730044C15
            product:hypothetical protein, full insert sequence
          Length = 1554

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 197  agaaggctggtcaggttgggga 218
            ||||||||||||||||||||||
Sbjct: 1255 agaaggctggtcaggttgggga 1234
to top
>gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, complete sequence
          Length = 87408

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 494   ctctattgctttcttttctgactcca 519
             ||||||||| ||||||||||||||||
Sbjct: 60643 ctctattgccttcttttctgactcca 60618
to top
>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
             sequence
          Length = 182054

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 510   tctgactccagggcttccagtt 531
             ||||||||||||||||||||||
Sbjct: 21678 tctgactccagggcttccagtt 21699
to top
>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence
          Length = 181742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 497   tattgctttcttttctgactc 517
             |||||||||||||||||||||
Sbjct: 85560 tattgctttcttttctgactc 85580
to top
>gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete sequence
          Length = 130513

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 530   ttgttcttccttggtaaatggatga 554
             |||||||||||||||||| ||||||
Sbjct: 23683 ttgttcttccttggtaaaaggatga 23707
to top
>gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complete sequence
          Length = 164781

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    agatatgcccaagtgccctgt 265
              |||||||||||||||||||||
Sbjct: 141115 agatatgcccaagtgccctgt 141095
to top
>gb|AC140734.5| Rattus norvegicus  BAC CH230-55I15 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 230896

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 57    tagaatacaataaagtaaccaacaa 81
             ||||| |||||||||||||||||||
Sbjct: 56198 tagaacacaataaagtaaccaacaa 56222
to top
>gb|AC154198.3| Mus musculus BAC clone RP24-393P24 from chromosome 13, complete
             sequence
          Length = 142792

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 490   tctcctctattgctttctttt 510
             |||||||||||||||||||||
Sbjct: 65087 tctcctctattgctttctttt 65067
to top
>gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome 5, complete sequence
          Length = 235471

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 620    ctgcataagcttcagagtgatttca 644
              |||| ||||||||||||||||||||
Sbjct: 218270 ctgcctaagcttcagagtgatttca 218294
to top
>gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, complete sequence
          Length = 189091

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 620    ctgcataagcttcagagtgatttca 644
              |||| ||||||||||||||||||||
Sbjct: 185916 ctgcctaagcttcagagtgatttca 185892
to top
>gb|AY067317.1| Schmidtea mediterranea clone HB.4.1f unknown mRNA sequence
          Length = 443

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 6  tttgtgataattgttgtaatt 26
          |||||||||||||||||||||
Sbjct: 59 tttgtgataattgttgtaatt 39
to top
>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence
          Length = 172081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ctccccatgaacttcccagc 292
              ||||||||||||||||||||
Sbjct: 146433 ctccccatgaacttcccagc 146452
to top
>gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, complete sequence
          Length = 171509

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   caagtgccctgtcacagtcc 273
             ||||||||||||||||||||
Sbjct: 11203 caagtgccctgtcacagtcc 11222
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     ctaccagaccagcgccagca 350
               ||||||||||||||||||||
Sbjct: 5017561 ctaccagaccagcgccagca 5017580
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     ctaccagaccagcgccagca 350
               ||||||||||||||||||||
Sbjct: 4934909 ctaccagaccagcgccagca 4934928
to top
>gb|AC151763.1| Ornithorhynchus anatinus BAC clone OABb-433P24 from chromosome unknown,
             complete sequence
          Length = 156663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 606   agtgaatctagtgactgcataagc 629
             ||||||||||||||||||| ||||
Sbjct: 41076 agtgaatctagtgactgcagaagc 41053
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     ctaccagaccagcgccagca 350
               ||||||||||||||||||||
Sbjct: 4735376 ctaccagaccagcgccagca 4735395
to top
>emb|CR933526.10| Zebrafish DNA sequence from clone DKEY-208P7 in linkage group 8,
             complete sequence
          Length = 100082

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 60    aatacaataaagtaaccaacaaat 83
             ||||||||||| ||||||||||||
Sbjct: 99778 aatacaataaaataaccaacaaat 99755
to top
>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence
          Length = 232320

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 512   tgactccagggcttccagttgttcttcc 539
             |||| |||||||||||||||||| ||||
Sbjct: 46880 tgacaccagggcttccagttgttattcc 46907
to top
>gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-328A3, complete
             sequence
          Length = 105485

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   tccagggcttccagttgttcttcc 539
             |||||||||||| |||||||||||
Sbjct: 63188 tccagggcttcctgttgttcttcc 63211
to top
>gb|AC003044.1| Homo sapiens PAC clone RP5-1055C4 from 7, complete sequence
          Length = 81231

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   ttctgactccagggcttcca 528
             ||||||||||||||||||||
Sbjct: 10044 ttctgactccagggcttcca 10063
to top
>gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, complete sequence
          Length = 182634

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 509   ttctgactccagggcttcca 528
             ||||||||||||||||||||
Sbjct: 43623 ttctgactccagggcttcca 43604
to top
>gb|AC146549.8| Medicago truncatula clone mth2-7p18, complete sequence
          Length = 96612

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   tcctctattgctttcttttc 511
             ||||||||||||||||||||
Sbjct: 80602 tcctctattgctttcttttc 80583
to top
>emb|AL365271.10| Human DNA sequence from clone RP11-307P5 on chromosome 6 Contains the
             3' part of a novel gene and a novel gene, complete
             sequence
          Length = 116079

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   cctctattgctttcttttct 512
             ||||||||||||||||||||
Sbjct: 37843 cctctattgctttcttttct 37824
to top
>gb|AY325900.1| Pseudomonas syringae pv. maculicola RpoN gene, partial cds
          Length = 1057

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 405 ctaccagaccagcgccagca 424
to top
>emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chromosome 20 Contains STSs
              and GSSs, complete sequence
          Length = 105964

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 335    cagaccagcgccagcaccaagccc 358
              ||||||||| ||||||||||||||
Sbjct: 100155 cagaccagcaccagcaccaagccc 100178
to top
>gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, complete sequence
          Length = 197826

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   caagtgccctgtcacagtcc 273
             ||||||||||||||||||||
Sbjct: 92838 caagtgccctgtcacagtcc 92857
to top
>gb|AF538690.1| Pseudomonas alcaligenes sigma 54 (rpoN) gene, partial cds
          Length = 1490

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 329 ctaccagaccagcgccagca 348
to top
>emb|X16474.1|PPRPONS P.putida rpoN gene for sigma Factor
          Length = 2636

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 491 ctaccagaccagcgccagca 510
to top
>gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosome 18, complete sequence
          Length = 184836

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 512    tgactccagggcttccagttgttcttcc 539
              |||| |||||||||||||||||| ||||
Sbjct: 173770 tgacaccagggcttccagttgttattcc 173797
to top
>emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN operon, strain A15101
          Length = 8072

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  ctaccagaccagcgccagca 350
            ||||||||||||||||||||
Sbjct: 4596 ctaccagaccagcgccagca 4615
to top
>gb|BC036427.1| Homo sapiens cDNA clone IMAGE:4799216
          Length = 2713

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  cctctattgctttcttttct 512
            ||||||||||||||||||||
Sbjct: 1706 cctctattgctttcttttct 1725
to top
>gb|BC047626.1| Homo sapiens cDNA clone IMAGE:4796028
          Length = 2706

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  cctctattgctttcttttct 512
            ||||||||||||||||||||
Sbjct: 1701 cctctattgctttcttttct 1720
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     ctaccagaccagcgccagca 350
               ||||||||||||||||||||
Sbjct: 1060037 ctaccagaccagcgccagca 1060018
to top
>gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, complete sequence
          Length = 174007

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   tccagggcttccagttgttcttcc 539
             |||||||||||| |||||||||||
Sbjct: 41575 tccagggcttcctgttgttcttcc 41552
to top
>gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 18 of
            460 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  ggccgctgcccacggcgcca 320
            ||||||||||||||||||||
Sbjct: 2477 ggccgctgcccacggcgcca 2496
to top
>gb|AC087533.7| Homo sapiens, clone RP11-89A4, complete sequence
          Length = 154179

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 507    ttttctgactccagggcttccagt 530
              |||||||||||||||| |||||||
Sbjct: 107194 ttttctgactccagggtttccagt 107171
to top
>gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167906

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     ttatgtttgtgataattgttgtaa 24
             |||| |||||||||||||||||||
Sbjct: 12877 ttatatttgtgataattgttgtaa 12854
to top
>dbj|AK164353.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130064I23
            product:unclassifiable, full insert sequence
          Length = 5856

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 512  tgactccagggcttccagttgttcttcc 539
            |||| |||||||||||||||||| ||||
Sbjct: 2686 tgacaccagggcttccagttgttattcc 2713
to top
>gb|AF283815.1|AF283815 Pseudomonas syringae pv. glycinea transcription initiation factor
           rpoN (rpoN), putative sigma-54 modulation protein, and
           nitrogen regulatory IIA-like protein genes, complete
           cds; and hypothetical protein gene, partial cds
          Length = 3018

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 530 ctaccagaccagcgccagca 549
to top
>emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chromosome 4, complete
              sequence
          Length = 202295

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 489    ctctcctctattgctttcttttct 512
              |||||||||||| |||||||||||
Sbjct: 151496 ctctcctctatttctttcttttct 151473
to top
>gb|AY341911.1| Pseudomonas fluorescens probable ATP-binding component of ABC
           transporter gene, partial cds; sigma factor RpoN (rpoN)
           and putative sigma-54 modulation protein genes, complete
           cds; and probable phosphotransferase enzyme II (ptsN)
           gene, partial cds
          Length = 2199

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 548 ctaccagaccagcgccagca 567
to top
>gb|AC010613.6| Homo sapiens chromosome 5 clone CTB-96J19, complete sequence
          Length = 87738

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     ttatgtttgtgataattgttgtaa 24
             |||| |||||||||||||||||||
Sbjct: 27742 ttatatttgtgataattgttgtaa 27719
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    ggccgctgcccacggcgcca 320
              ||||||||||||||||||||
Sbjct: 189715 ggccgctgcccacggcgcca 189734
to top
>gb|AC147298.4| Pan troglodytes BAC clone RP43-58G7 from chromosome 7, complete
             sequence
          Length = 228916

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   ttctgactccagggcttcca 528
             ||||||||||||||||||||
Sbjct: 88188 ttctgactccagggcttcca 88207
to top
>gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, complete sequence
          Length = 206295

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 334   ccagaccagcgccagcaccaagcc 357
             |||||||||| |||||||||||||
Sbjct: 32412 ccagaccagccccagcaccaagcc 32435
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>gb|AC104655.4| Homo sapiens BAC clone RP11-383P6 from 2, complete sequence
          Length = 95616

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   aacagtggagctgctaccac 237
             ||||||||||||||||||||
Sbjct: 87779 aacagtggagctgctaccac 87760
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>gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 of the complete
            genome
          Length = 11340

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  ctaccagaccagcgccagca 350
            ||||||||||||||||||||
Sbjct: 4135 ctaccagaccagcgccagca 4154
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>gb|AC175706.2| Mus musculus BAC clone RP24-307B22 from chromosome y, complete sequence
          Length = 186810

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 489    ctctcctctattgctttcttttct 512
              |||||||||||| |||||||||||
Sbjct: 148031 ctctcctctatttctttcttttct 148008
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>gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, complete sequence
          Length = 174363

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 516    tccagggcttccagttgttcttcc 539
              |||||||||||| |||||||||||
Sbjct: 100822 tccagggcttcctgttgttcttcc 100799
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>gb|AF199600.1|AF199600 Pseudomonas syringae pv. maculicola alternative sigma factor RpoN
           (rpoN) gene, complete cds
          Length = 1770

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 575 ctaccagaccagcgccagca 594
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>gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, complete sequence
          Length = 224946

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 489    ctctcctctattgctttcttttct 512
              |||||||||||| |||||||||||
Sbjct: 112557 ctctcctctatttctttcttttct 112534
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     ctaccagaccagcgccagca 350
               ||||||||||||||||||||
Sbjct: 1147277 ctaccagaccagcgccagca 1147258
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>emb|CT033781.12| Mouse DNA sequence from clone RP24-85H21 on chromosome 13, complete
             sequence
          Length = 206653

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 489   ctctcctctattgctttcttttct 512
             |||||||||||| |||||||||||
Sbjct: 23510 ctctcctctatttctttcttttct 23533
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     ctaccagaccagcgccagca 350
               ||||||||||||||||||||
Sbjct: 1095726 ctaccagaccagcgccagca 1095707
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>emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on chromosome 13, complete
             sequence
          Length = 201791

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 616   gtgactgcataagcttcaga 635
             ||||||||||||||||||||
Sbjct: 41724 gtgactgcataagcttcaga 41743
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>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
            sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 452  cgtgctgccaattaccccagcctc 475
            ||||||||||||| ||||||||||
Sbjct: 3999 cgtgctgccaatttccccagcctc 3976
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>gb|M24916.1|PSENTRAA P.putida sigma factor (ntrA) gene, complete cds
          Length = 2756

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 928 ctaccagaccagcgccagca 947
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>gb|L26916.1|PSERPON Pseudomonas aeruginosa (rpoN) gene, complete cds; ORF1, complete
           cds; ORF2, complete cds
          Length = 2663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctaccagaccagcgccagca 350
           ||||||||||||||||||||
Sbjct: 517 ctaccagaccagcgccagca 536
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>dbj|D42111.1|TOBBY2 Tobacco mRNA
          Length = 1532

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 aatccaacacctgaaccaac 421
           ||||||||||||||||||||
Sbjct: 683 aatccaacacctgaaccaac 664
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>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 472    cctccttcagccgctttctctcct 495
              ||||||||||||||||||| ||||
Sbjct: 152172 cctccttcagccgctttctgtcct 152195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,586,828
Number of Sequences: 3902068
Number of extensions: 5586828
Number of successful extensions: 114484
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113947
Number of HSP's gapped (non-prelim): 537
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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