ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39p17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL112356.1|CNS01A18 Botrytis cinerea strain T4 cDNA library Length = 660 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 236 tgagtggagatttgaatttgccag 259 |||||||||||||||||||||||| Sbjct: 356 tgagtggagatttgaatttgccag 333
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.041 Identities = 30/32 (93%) Strand = Plus / Minus Query: 623 aactagacgacgccccgcgtgttgctgcggga 654 ||||||| || ||||||||||||||||||||| Sbjct: 6419638 aactagaggatgccccgcgtgttgctgcggga 6419607 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 522 ttttaaatcattaatattttcttaaaattat 552 |||||||| ||||||||||| |||||||||| Sbjct: 6870619 ttttaaataattaatatttttttaaaattat 6870589
>gb|AC153641.3| Mus musculus 6 BAC RP23-5F24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 193417 Score = 48.1 bits (24), Expect = 0.041 Identities = 27/28 (96%) Strand = Plus / Minus Query: 594 acaagattttatatcatttttgttaaat 621 |||||||||| ||||||||||||||||| Sbjct: 80161 acaagattttttatcatttttgttaaat 80134
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_D05 Length = 128178 Score = 48.1 bits (24), Expect = 0.041 Identities = 30/32 (93%) Strand = Plus / Minus Query: 623 aactagacgacgccccgcgtgttgctgcggga 654 ||||||| || ||||||||||||||||||||| Sbjct: 61631 aactagaggatgccccgcgtgttgctgcggga 61600
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 635 ccccgcgtgttgctgcgggaaacatga 661 |||||||||||||||||||| |||||| Sbjct: 720228 ccccgcgtgttgctgcgggatacatga 720254 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 622 taactagacgacgccccgcgtgttgctgc 650 |||||||| || ||||||||||||||||| Sbjct: 23041645 taactagaggatgccccgcgtgttgctgc 23041617
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 635 ccccgcgtgttgctgcgggaaacatga 661 |||||||||||||||||||| |||||| Sbjct: 58759 ccccgcgtgttgctgcgggatacatga 58785
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 635 ccccgcgtgttgctgcgggaaacatga 661 |||||||||||||||||||| |||||| Sbjct: 40035 ccccgcgtgttgctgcgggatacatga 40061
>dbj|AP005826.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0758B01 Length = 159206 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 522 ttttaaatcattaatattttcttaaaattat 552 |||||||| ||||||||||| |||||||||| Sbjct: 88345 ttttaaataattaatatttttttaaaattat 88315
>gb|AC139328.4| Mus musculus BAC clone RP24-299C21 from chromosome Y, complete sequence Length = 156740 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 522 ttttaaatcattaatattttct 543 |||||||||||||||||||||| Sbjct: 31573 ttttaaatcattaatattttct 31552
>gb|AC145589.3| Mus musculus BAC clone RP24-174M10 from chromosome Y, complete sequence Length = 152506 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 522 ttttaaatcattaatattttct 543 |||||||||||||||||||||| Sbjct: 4055 ttttaaatcattaatattttct 4076
>gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence Length = 251756 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 265 cattgtagatataatcccagtgctta 290 |||||||| ||||||||||||||||| Sbjct: 70840 cattgtagctataatcccagtgctta 70815
>gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, complete sequence Length = 161551 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 531 attaatattttcttaaaattat 552 |||||||||||||||||||||| Sbjct: 129922 attaatattttcttaaaattat 129901
>emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in linkage group 11, complete sequence Length = 230267 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 532 ttaatattttcttaaaattatttagg 557 ||||||||||||||| |||||||||| Sbjct: 76121 ttaatattttcttaatattatttagg 76146
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 687 aaaaacaaaaactattgctaa 707 ||||||||||||||||||||| Sbjct: 352893 aaaaacaaaaactattgctaa 352913
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 ttttatatcatttttgttaaa 620 ||||||||||||||||||||| Sbjct: 1561589 ttttatatcatttttgttaaa 1561609
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 523 tttaaatcattaatattttcttaaaattattta 555 ||||||| ||||||||||| |||||||| |||| Sbjct: 212995 tttaaattattaatatttttttaaaatttttta 212963
>gb|AC004779.1| Homo sapiens chromosome 16, cosmid clone 304A10 (LANL), complete sequence Length = 35687 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 21322 tataatcccagtgcttaggga 21342
>gb|AC005564.1| Homo sapiens chromosome 16, cosmid clone 420F6 (LANL), complete sequence Length = 37930 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 11608 tataatcccagtgcttaggga 11628
>gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062M03 map near S6115, complete sequence Length = 138223 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 600 ttttatatcatttttgttaaattaa 624 |||||||||||| |||||||||||| Sbjct: 134080 ttttatatcattgttgttaaattaa 134056
>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0060D22 map near S6115, complete sequence Length = 139929 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 600 ttttatatcatttttgttaaattaa 624 |||||||||||| |||||||||||| Sbjct: 96764 ttttatatcattgttgttaaattaa 96788
>gb|AY679523.1| Homo sapiens cell division cycle 2-like 5 (cholinesterase-related cell division controller) (CDC2L5) gene, complete cds Length = 148952 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 138827 tataatcccagtgcttaggga 138807
>gb|AC147677.4| Canis Familiaris, clone XX-25A1, complete sequence Length = 154021 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 agggaagctggaaaactgcacgtgc 175 ||||| ||||||||||||||||||| Sbjct: 31185 agggaggctggaaaactgcacgtgc 31209
>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete sequence Length = 221525 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 681 gtcttgaaaaacaaaaactat 701 ||||||||||||||||||||| Sbjct: 64525 gtcttgaaaaacaaaaactat 64545
>emb|BX323586.10| Zebrafish DNA sequence from clone CH211-3O3 in linkage group 9, complete sequence Length = 171172 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 tatatcatttttgttaaatta 623 ||||||||||||||||||||| Sbjct: 101347 tatatcatttttgttaaatta 101327
>ref|XM_650388.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (28.t00008) partial mRNA Length = 1716 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 513 caatccatattttaaatcattaatatttt 541 |||||||||||||||| ||| |||||||| Sbjct: 21 caatccatattttaaaacatcaatatttt 49
>gb|AC101811.3| Mus musculus chromosome 19, clone RP24-295O9, complete sequence Length = 146963 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 tttaaatcattaatattttcttaaa 547 |||||||||| |||||||||||||| Sbjct: 119771 tttaaatcataaatattttcttaaa 119747
>emb|AL356240.15| Human DNA sequence from clone RP5-873F21 on chromosome 11 Contains part of a novel gene for brain protein 239, ESTs and GSSs, complete sequence Length = 114144 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 tcagttgagtggagatttgaatttg 255 |||||||| |||||||||||||||| Sbjct: 98307 tcagttgattggagatttgaatttg 98331
>emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on chromosome 13, complete sequence Length = 141895 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 687 aaaaacaaaaactattgctaaaata 711 ||||| ||||||||||||||||||| Sbjct: 137275 aaaaaaaaaaactattgctaaaata 137299
>emb|AL354712.18| Human DNA sequence from clone RP4-597A16 on chromosome 1p36.13-36.23 Contains the 5' end of a novel leucine rich repeat domain containing protein, a novel gene, a pseudogene similar to part of WD repeat domain, the 5' end of the gene for lung type-I cell membrane-associated glycoprotein (T1A-2) and a CpG island, complete sequence Length = 123288 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 114834 tataatcccagtgcttaggga 114814
>emb|AL138707.10| Human DNA sequence from clone RP11-430M15 on chromosome 13 Contains the 3' end of a novel gene (FLJ22153) and the 3' end of the gene for a novel protein (ortholog of rat putative four repeat ion channel), complete sequence Length = 181311 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 aatattttcttaaaattattt 554 ||||||||||||||||||||| Sbjct: 75045 aatattttcttaaaattattt 75025
>emb|AL133350.16| Human DNA sequence from clone RP11-155N8 on chromosome 10 Contains GSSs and STSs, complete sequence Length = 89833 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 taatcccagtgcttagggaag 296 ||||||||||||||||||||| Sbjct: 3655 taatcccagtgcttagggaag 3675
>gb|AC184690.1| Pan troglodytes chromosome X clone CH251-483P23 map human ortholog p11.4, complete sequence Length = 192593 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 652 ggaaacatgataaacagatgt 672 ||||||||||||||||||||| Sbjct: 6437 ggaaacatgataaacagatgt 6417
>gb|AC117474.7| Homo sapiens 3 BAC RP11-778P17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144160 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 531 attaatattttcttaaaatta 551 ||||||||||||||||||||| Sbjct: 140852 attaatattttcttaaaatta 140832
>emb|AL672217.6| Zebrafish DNA sequence from clone BUSM1-72B14 Contains the gdf8 gene for growth differentiation factor 8, a novel gene similar to PSML1 (postmeiotic segregation increased 1-like protein), two novel genes, the 3' part of a novel gene, a novel glycoprotease, a novel gene and two CpG islands, complete sequence Length = 117322 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 tatatcatttttgttaaatta 623 ||||||||||||||||||||| Sbjct: 3965 tatatcatttttgttaaatta 3945
>emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in linkage group 11, complete sequence Length = 145678 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 532 ttaatattttcttaaaattat 552 ||||||||||||||||||||| Sbjct: 53306 ttaatattttcttaaaattat 53326
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccgaaacccaaggacagcaag 83 ||||||||||||||||||||| Sbjct: 149061 ccgaaacccaaggacagcaag 149081
>gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185721 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 106775 tataatcccagtgcttaggga 106795
>emb|AL929499.5| Mouse DNA sequence from clone RP23-116K8 on chromosome 4 Contains a capping protein alpha 1 (Cappa1) pseudogene, complete sequence Length = 159369 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 531 attaatattttcttaaaatta 551 ||||||||||||||||||||| Sbjct: 137307 attaatattttcttaaaatta 137287
>gb|AF126483.2| Homo sapiens chromosome 8 clone GS1-148g17 map 8p22-p21, complete sequence Length = 73160 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 atattttcttaaaattattta 555 ||||||||||||||||||||| Sbjct: 35757 atattttcttaaaattattta 35777
>emb|BX000701.25| Zebrafish DNA sequence from clone CH211-18I3 in linkage group 3, complete sequence Length = 181568 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 taaatcattaatattttctta 545 ||||||||||||||||||||| Sbjct: 61079 taaatcattaatattttctta 61099
>gb|AC112212.2| Homo sapiens chromosome 3 clone RP11-185E15, complete sequence Length = 168752 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 154625 tataatcccagtgcttaggga 154605
>gb|AC107614.3| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160917 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 taatattttcttaaaattatt 553 ||||||||||||||||||||| Sbjct: 101065 taatattttcttaaaattatt 101045
>gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, complete sequence Length = 206872 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 540 ttcttaaaattatttaggaat 560 ||||||||||||||||||||| Sbjct: 60802 ttcttaaaattatttaggaat 60782
>gb|AC078813.13| Homo sapiens 3q BAC RP11-149B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 83003 tataatcccagtgcttaggga 82983
>gb|AC168052.2| Pan troglodytes chromosome X clone PTB-031C19 map human ortholog p11.4, complete sequence Length = 144722 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 652 ggaaacatgataaacagatgt 672 ||||||||||||||||||||| Sbjct: 59506 ggaaacatgataaacagatgt 59486
>gb|AC106779.3| Homo sapiens chromosome 16 clone RP11-343H19, complete sequence Length = 158297 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 tttaaatcattaatattttcttaaa 547 ||||||| ||||||||||||||||| Sbjct: 4088 tttaaatgattaatattttcttaaa 4112
>gb|AC019292.10| Homo sapiens, clone RP11-23J14, complete sequence Length = 187375 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 535 atattttcttaaaattattta 555 ||||||||||||||||||||| Sbjct: 103795 atattttcttaaaattattta 103775
>gb|AC099328.2| Homo sapiens chromosome 3 clone RP11-62G11, complete sequence Length = 156066 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 58842 tataatcccagtgcttaggga 58822
>gb|AC007754.4|AC007754 Drosophila melanogaster, chromosome 3R, region 87E-87E, BAC clone BACR05K08, complete sequence Length = 188967 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 taatattttcttaaaattatttagg 557 ||||||| ||||||||||||||||| Sbjct: 74460 taatattgtcttaaaattatttagg 74436
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 622 taactagacgacgccccgcgtgttgctgc 650 ||||||||||| |||||||||||||||| Sbjct: 25848522 taactagacgataccccgcgtgttgctgc 25848494
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 600 ttttatatcatttttgttaaattaa 624 |||||||||||| |||||||||||| Sbjct: 12278733 ttttatatcattgttgttaaattaa 12278709
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 598 gattttatatcatttttgtta 618 ||||||||||||||||||||| Sbjct: 27209482 gattttatatcatttttgtta 27209502
>gb|AC026461.11| Homo sapiens chromosome 16 clone RP11-249C24, complete sequence Length = 168392 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 tttaaatcattaatattttcttaaa 547 ||||||| ||||||||||||||||| Sbjct: 63791 tttaaatgattaatattttcttaaa 63767
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 623 aactagacgacgccccgcgtgttgctgcg 651 ||||||| || |||||||||||||||||| Sbjct: 2921078 aactagaggatgccccgcgtgttgctgcg 2921050
>gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H6, complete sequence Length = 123169 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 taatcccagtgcttagggaag 296 ||||||||||||||||||||| Sbjct: 77283 taatcccagtgcttagggaag 77263
>gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete sequence Length = 197659 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 ttttatatcatttttgttaaa 620 ||||||||||||||||||||| Sbjct: 16158 ttttatatcatttttgttaaa 16178
>gb|AC116738.25| Mus musculus chromosome 5, clone RP23-418D19, complete sequence Length = 193386 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ccactccctgcagctagcaat 140 ||||||||||||||||||||| Sbjct: 78559 ccactccctgcagctagcaat 78539
>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence Length = 216977 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 ttttaaatcattaatattttc 542 ||||||||||||||||||||| Sbjct: 38039 ttttaaatcattaatattttc 38019
>gb|AC157911.5| Mus musculus chromosome 19, clone RP24-192F3, complete sequence Length = 168559 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 tttaaatcattaatattttcttaaa 547 |||||||||| |||||||||||||| Sbjct: 86383 tttaaatcataaatattttcttaaa 86359
>gb|AC009312.4| Homo sapiens BAC clone RP11-425F6 from 2, complete sequence Length = 204834 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 535 atattttcttaaaattattta 555 ||||||||||||||||||||| Sbjct: 186422 atattttcttaaaattattta 186402
>gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, complete sequence Length = 126052 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 taatcccagtgcttagggaag 296 ||||||||||||||||||||| Sbjct: 104277 taatcccagtgcttagggaag 104297
>gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182056 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 687 aaaaacaaaaactattgctaaaata 711 ||||||||||||||||| ||||||| Sbjct: 15105 aaaaacaaaaactattggtaaaata 15129
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 catattttaaatcattaatat 538 ||||||||||||||||||||| Sbjct: 1699233 catattttaaatcattaatat 1699213
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 623 aactagacgacgccccgcgtgttgctgcg 651 ||||||| || |||||||||||||||||| Sbjct: 2595 aactagaggatgccccgcgtgttgctgcg 2567
>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0030H07 Length = 168253 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 623 aactagacgacgccccgcgtgttgctgcg 651 ||||||| || |||||||||||||||||| Sbjct: 128076 aactagaggatgccccgcgtgttgctgcg 128048
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 598 gattttatatcatttttgtta 618 ||||||||||||||||||||| Sbjct: 66498 gattttatatcatttttgtta 66518
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 622 taactagacgacgccccgcgtgttgctgc 650 |||||||| || ||||||||||||||||| Sbjct: 116859 taactagaggatgccccgcgtgttgctgc 116831
>gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complete sequence Length = 165196 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 65963 tataatcccagtgcttaggga 65943
>gb|AC006023.2|AC006023 Homo sapiens PAC clone RP5-1147A1 from 7p14-p12, complete sequence Length = 157385 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 53346 tataatcccagtgcttaggga 53326
>emb|AJ315157.1|HSA315157 Homo sapiens t(8;16)(p11;p13) chimeric CBP/MOZ genomic DNA from acute myeloid leukemia patient (case 4) Length = 419 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tataatcccagtgcttaggga 294 ||||||||||||||||||||| Sbjct: 44 tataatcccagtgcttaggga 64
>emb|BX927077.10| Zebrafish DNA sequence from clone DKEY-119M17 in linkage group 19, complete sequence Length = 239130 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 tcctaaatatagattcacaat 494 ||||||||||||||||||||| Sbjct: 10900 tcctaaatatagattcacaat 10880
>gb|AE003699.3| Drosophila melanogaster chromosome 3R, section 37 of 118 of the complete sequence Length = 208424 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 taatattttcttaaaattatttagg 557 ||||||| ||||||||||||||||| Sbjct: 91046 taatattgtcttaaaattatttagg 91022
>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence Length = 178509 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 taaatcattaatattttctta 545 ||||||||||||||||||||| Sbjct: 120566 taaatcattaatattttctta 120546
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 600 ttttatatcatttttgttaaattaa 624 |||||||||||| |||||||||||| Sbjct: 12358040 ttttatatcattgttgttaaattaa 12358016
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 622 taactagacgacgccccgcgtgttgctgc 650 ||||||||||| |||||||||||||||| Sbjct: 25776698 taactagacgataccccgcgtgttgctgc 25776670
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 622 taactagacgacgccccgcgtgttgctgc 650 ||||||||||| |||||||||||||||| Sbjct: 69973 taactagacgataccccgcgtgttgctgc 69945
>gb|AC147899.2| Xenopus tropicalis clone CH216-53A2, complete sequence Length = 158405 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aacccaaggacagcaaggaaa 87 ||||||||||||||||||||| Sbjct: 119609 aacccaaggacagcaaggaaa 119589
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 337101 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 652 ggaaacatgataaacagatgt 672 ||||||||||||||||||||| Sbjct: 62713 ggaaacatgataaacagatgt 62693 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,523,561 Number of Sequences: 3902068 Number of extensions: 9523561 Number of successful extensions: 225454 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 224403 Number of HSP's gapped (non-prelim): 1051 length of query: 735 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 712 effective length of database: 17,143,297,704 effective search space: 12206027965248 effective search space used: 12206027965248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
