ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39p14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... | 33 | 1.00 | 2 | MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... | 32 | 2.2 | 3 | APEB_MYCTU (O06634) Probable M18-family aminopeptidase 2 (EC 3.4... | 31 | 2.9 | 4 | APEB_MYCBO (P59951) Probable M18-family aminopeptidase 2 (EC 3.4... | 31 | 2.9 | 5 | RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1 | 30 | 4.9 | 6 | HM21_CAEEL (Q22811) Homeobox protein ceh-21 | 30 | 4.9 | 7 | TSGA_SALTY (Q8ZLK7) Protein tsgA | 30 | 8.4 | 8 | TSGA_SALTI (Q8Z1Z8) Protein tsgA | 30 | 8.4 | 9 | TSGA_SALPA (Q5PLW2) Protein tsgA | 30 | 8.4 | 10 | TSGA_SALCH (Q57J00) Protein tsgA | 30 | 8.4 |
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>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 32.7 bits (73), Expect = 1.00 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = -1 Query: 614 DMEGAAVAYVADLFSTPAIFVKAVTDIVDGEKPTAEEFLQNLISVTMALDQAVLQVV 444 +ME AAVA V F TP + ++A++DI E + F Q L + + VL+V+ Sbjct: 173 EMEAAAVAQVCHQFKTPFVVIRALSDIAGKESHVS--FDQFLEQAAVHSTELVLKVI 227
>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 229 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = -1 Query: 614 DMEGAAVAYVADLFSTPAIFVKAVTDIVDGEKPTA-EEFLQNLISVTMALDQAVLQVVD 441 +ME A+A V F+ P + V+A++D DG+ + EEFL + AL VL ++D Sbjct: 172 EMEATAIAQVCYAFNVPFVVVRAISDGGDGKASMSFEEFLPLAAKQSSAL---VLGMID 227
>APEB_MYCTU (O06634) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 433 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 286 RGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQ 387 R RE W + PG+++T + +GSL WN EQ Sbjct: 35 RELREADRWPDKPGRYFT---VRAGSLVAWNAEQ 65
>APEB_MYCBO (P59951) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 433 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 286 RGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQ 387 R RE W + PG+++T + +GSL WN EQ Sbjct: 35 RELREADRWPDKPGRYFT---VRAGSLVAWNAEQ 65
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 30.4 bits (67), Expect = 4.9 Identities = 23/68 (33%), Positives = 33/68 (48%) Frame = +1 Query: 457 TAWSSAIVTEIRFCRNSSAVGFSPSTMSVTALTKIAGVENKSXXXXXXXPSISLTVASLL 636 T S V E R + AVG ST+ + +L + +ENKS PS +++ Sbjct: 604 TCLSLGEVPEGRVRSSFLAVGCDDSTVRILSLDPDSTLENKSVQALTSAPS----ALNIM 659 Query: 637 SIADSS*G 660 S+ADSS G Sbjct: 660 SMADSSSG 667
>HM21_CAEEL (Q22811) Homeobox protein ceh-21| Length = 495 Score = 30.4 bits (67), Expect = 4.9 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = +3 Query: 351 IFRLPRFVEPRTA*RKVGRSEIRDTFATDEVYHLQDCLVKRHRHRDQVLQKLLGCWLLPI 530 + R+ EP A RK IR TF ++ LQ + HR ++ QKL L Sbjct: 373 VARITGLDEPTPAKRKKTVKVIRLTFTETQLKSLQKSFQQNHRPTREMRQKLSATLELDF 432 Query: 531 NNVGHSF 551 + VG+ F Sbjct: 433 STVGNFF 439
>TSGA_SALTY (Q8ZLK7) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.4 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 329 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 153 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 152 TPMDSAQWLMDAPWQLY 102 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254
>TSGA_SALTI (Q8Z1Z8) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.4 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 329 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 153 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 152 TPMDSAQWLMDAPWQLY 102 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254
>TSGA_SALPA (Q5PLW2) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.4 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 329 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 153 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 152 TPMDSAQWLMDAPWQLY 102 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254
>TSGA_SALCH (Q57J00) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.4 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 329 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 153 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 152 TPMDSAQWLMDAPWQLY 102 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,160,730 Number of Sequences: 219361 Number of extensions: 2220419 Number of successful extensions: 5813 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5813 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
