ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39p04 |
|---|---|
| Clone Library Name | barley_pub |
>YOJ9_CAEEL (Q95ZI6) Hypothetical protein ZK353.9| Length = 208 Score = 84.7 bits (208), Expect = 3e-16 Identities = 42/110 (38%), Positives = 67/110 (60%) Frame = -3 Query: 744 IAVVGGADGTSPSRMRAFINREGIDFSDAQNMQPVQEWELAENLQGVLEYQTRYSRFQGV 565 ++++G DG+ P+++R F +RE + F D +++ QE +L ++ QG+++Y + S+F + Sbjct: 88 LSIIGDEDGSHPAKIRLFKDREAMSFDDC-SIEADQEIDLKQDPQGLVDYPLKASKFGNI 146 Query: 564 ANLTLHFPDNFGGDTTKIYYIGLRGEATQNKRDVVATIVYEVMPNPSDHK 415 NL++ NFG D TKIYYIGLRGE R +A YE DHK Sbjct: 147 HNLSILVDANFGEDETKIYYIGLRGEFQHEFRQRIAIATYESRAQLKDHK 196
>TXNL1_RAT (Q920J4) Thioredoxin-like protein 1 (Thioredoxin-related protein)| Length = 288 Score = 42.0 bits (97), Expect = 0.002 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Frame = -3 Query: 747 SIAVVGGADGTSPSRMRAFINR-EGIDFSDAQNMQPVQEWELAEN---LQGVLEYQTRYS 580 S+ G +G P ++ FIN +DF +A+ +P Q EL E+ G++ RY Sbjct: 178 SMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIV--PLRYV 235 Query: 579 RFQGVANLTLHFPDNFG-GDTTKIYYIGLRGEATQ 478 +FQ V ++TL N G +TT+I Y G Q Sbjct: 236 KFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQ 270
>TXNL1_MOUSE (Q8CDN6) Thioredoxin-like protein 1 (32 kDa thioredoxin-related| protein) Length = 288 Score = 42.0 bits (97), Expect = 0.002 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Frame = -3 Query: 747 SIAVVGGADGTSPSRMRAFINR-EGIDFSDAQNMQPVQEWELAEN---LQGVLEYQTRYS 580 S+ G +G P ++ FIN +DF +A+ +P Q EL E+ G++ RY Sbjct: 178 SMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIV--PLRYV 235 Query: 579 RFQGVANLTLHFPDNFG-GDTTKIYYIGLRGEATQ 478 +FQ V ++TL N G +TT+I Y G Q Sbjct: 236 KFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQ 270
>TXNL1_HUMAN (O43396) Thioredoxin-like protein 1 (32 kDa thioredoxin-related| protein) Length = 288 Score = 41.2 bits (95), Expect = 0.003 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Frame = -3 Query: 747 SIAVVGGADGTSPSRMRAFINR-EGIDFSDAQNMQPVQEWELAEN---LQGVLEYQTRYS 580 S+ G +G P ++ FIN +DF +A+ +P Q EL E+ G++ RY Sbjct: 178 SMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIV--PLRYV 235 Query: 579 RFQGVANLTLHFPDNFG-GDTTKIYYIGLRGEATQ 478 +FQ V ++T+ N G +TT+I Y G Q Sbjct: 236 KFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQ 270
>7LESS_DROVI (P20806) Protein sevenless (EC 2.7.10.1)| Length = 2594 Score = 32.3 bits (72), Expect = 1.6 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -3 Query: 717 TSPSRMRAFINREGIDFSDAQNMQPVQEWELAENLQGVLEYQTRYSRFQG 568 T P R+R F+ R+ A N+ + W++ E G Q R S ++G Sbjct: 1323 TQPRRLRVFVERQAAPLQLAPNVSALLRWDVPEEHAGSQSLQYRISCWRG 1372
>HIS6_STAAR (Q6GDD1) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 31.6 bits (70), Expect = 2.8 Identities = 22/73 (30%), Positives = 29/73 (39%) Frame = -2 Query: 229 GSQWLDDVT*LCRVGGSMRLFNYAALSLPTLSSVANKYSLCKEILSSFQNKCLSIKL*HL 50 G Q LDD+T L G N +AL P L K+ F +C+ I + Sbjct: 82 GIQSLDDITQLLNHGADKVSLNSSALKNP---------QLIKQASDKFGRQCICIAIDSY 132 Query: 49 FLGRRKYKYCLDH 11 + RK YC H Sbjct: 133 YDPERKAHYCCTH 145
>HIS6_STAAN (P64362) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 31.6 bits (70), Expect = 2.8 Identities = 22/73 (30%), Positives = 29/73 (39%) Frame = -2 Query: 229 GSQWLDDVT*LCRVGGSMRLFNYAALSLPTLSSVANKYSLCKEILSSFQNKCLSIKL*HL 50 G Q LDD+T L G N +AL P L K+ F +C+ I + Sbjct: 82 GIQSLDDITQLLNHGADKVSLNSSALKNP---------QLIKQASDKFGRQCICIAIDSY 132 Query: 49 FLGRRKYKYCLDH 11 + RK YC H Sbjct: 133 YDPERKAHYCCTH 145
>HIS6_STAAM (P64361) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 31.6 bits (70), Expect = 2.8 Identities = 22/73 (30%), Positives = 29/73 (39%) Frame = -2 Query: 229 GSQWLDDVT*LCRVGGSMRLFNYAALSLPTLSSVANKYSLCKEILSSFQNKCLSIKL*HL 50 G Q LDD+T L G N +AL P L K+ F +C+ I + Sbjct: 82 GIQSLDDITQLLNHGADKVSLNSSALKNP---------QLIKQASDKFGRQCICIAIDSY 132 Query: 49 FLGRRKYKYCLDH 11 + RK YC H Sbjct: 133 YDPERKAHYCCTH 145
>HIS6_STAAB (Q2YZ71) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 31.6 bits (70), Expect = 2.8 Identities = 22/73 (30%), Positives = 29/73 (39%) Frame = -2 Query: 229 GSQWLDDVT*LCRVGGSMRLFNYAALSLPTLSSVANKYSLCKEILSSFQNKCLSIKL*HL 50 G Q LDD+T L G N +AL P L K+ F +C+ I + Sbjct: 82 GIQSLDDITQLLNHGADKVSLNSSALKNP---------QLIKQASDKFGRQCICIAIDSY 132 Query: 49 FLGRRKYKYCLDH 11 + RK YC H Sbjct: 133 YDPERKAHYCCTH 145
>FLP_YEAST (P03870) Recombinase Flp protein (Protein Able)| Length = 423 Score = 30.8 bits (68), Expect = 4.7 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -3 Query: 690 INREGIDFSDAQNMQPVQEWELAENLQGVLEYQTRYSRFQGV 565 I++E I D N P++EW+ E L+G E RY + G+ Sbjct: 367 ISKEMIALKDETN--PIEEWQHIEQLKGSAEGSIRYPAWNGI 406
>NU5M_HYLLA (P03919) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 603 Score = 30.0 bits (66), Expect = 8.0 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +1 Query: 235 IRWFTLKTTNVQAGPVLFVQNSSELKFLSNLRTAARHGSAEEACH*HAYSTCEKPPPVS 411 + WF L T + + ++ + ++ L+ L AAR SA+ H S E P PVS Sbjct: 186 LAWFLLHTNSWEPQQMILLNSNPNFLPLAGLLLAARGKSAQLGLHPWLPSAMEGPTPVS 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,592,198 Number of Sequences: 219361 Number of extensions: 2265710 Number of successful extensions: 5368 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5367 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7932903580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
