ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39p02 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 294 bits (752), Expect = 2e-79 Identities = 144/144 (100%), Positives = 144/144 (100%) Frame = -2 Query: 637 AKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVS 458 AKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVS Sbjct: 92 AKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVS 151 Query: 457 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 278 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF Sbjct: 152 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 211 Query: 277 IWPVAAYRELINGDLVVDDADIGY 206 IWPVAAYRELINGDLVVDDADIGY Sbjct: 212 IWPVAAYRELINGDLVVDDADIGY 235
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 234 bits (598), Expect = 1e-61 Identities = 110/136 (80%), Positives = 124/136 (91%) Frame = -2 Query: 637 AKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVS 458 AKREKQS+KKL SSLK YAPDSAPALAI+AT++KTKRRF+NYGK GLLCGSDGLPHLIVS Sbjct: 93 AKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVS 152 Query: 457 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 278 GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF Sbjct: 153 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGF 212 Query: 277 IWPVAAYRELINGDLV 230 WPVAAYRE +NG+L+ Sbjct: 213 SWPVAAYREYLNGELI 228
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 232 bits (591), Expect = 8e-61 Identities = 108/136 (79%), Positives = 125/136 (91%) Frame = -2 Query: 637 AKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVS 458 AKREKQ++KKL +SLK YA DSAPALAI+AT++KTK+RF+NYGK+GLLCGSDGLPHLIVS Sbjct: 92 AKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVS 151 Query: 457 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 278 GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF Sbjct: 152 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGF 211 Query: 277 IWPVAAYRELINGDLV 230 WPVAAYREL+NG+LV Sbjct: 212 SWPVAAYRELLNGELV 227
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 161 bits (407), Expect = 2e-39 Identities = 76/141 (53%), Positives = 97/141 (68%) Frame = -2 Query: 634 KREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSG 455 +R SVKKL S L KY P++ P LA++ I+KTK RF YG GLLCG+DGLPHLI G Sbjct: 38 RRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADG 97 Query: 454 DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFI 275 H GEF+ PG+ FLYIAGWIGWVGR+Y+ S KP +EIIIDV +A I G+I Sbjct: 98 RWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYI 157 Query: 274 WPVAAYRELINGDLVVDDADI 212 WP AA++E +G+L+ + +I Sbjct: 158 WPFAAFKEFTSGNLIAKEDEI 178
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 159 bits (402), Expect = 7e-39 Identities = 75/141 (53%), Positives = 98/141 (69%) Frame = -2 Query: 634 KREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSG 455 KR SVKKL + L KY ++ PALA+ I+KTK RF YG+ GLLCG+DGLPHLI G Sbjct: 40 KRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDG 99 Query: 454 DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFI 275 G+F+ PG+LFLYI GWIGWVGR YL++V+ KP +EII+DV LA + + GF Sbjct: 100 RWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFA 159 Query: 274 WPVAAYRELINGDLVVDDADI 212 WP+AA++E +G L+ + DI Sbjct: 160 WPLAAWQEFSSGQLIAPNDDI 180
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 156 bits (394), Expect = 6e-38 Identities = 76/141 (53%), Positives = 97/141 (68%) Frame = -2 Query: 634 KREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSG 455 KR K SVKKL + KY S PALA+Q I++T+ RF+ Y + LLCG+DGLPHLI G Sbjct: 40 KRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADG 99 Query: 454 DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFI 275 H EFI PG F+YI+GWIGWVGR YL AVS K P EIII+V LA +I+ G+I Sbjct: 100 RWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYI 159 Query: 274 WPVAAYRELINGDLVVDDADI 212 WP++A++E I+ DLV D ++ Sbjct: 160 WPISAWQEFISNDLVALDEEV 180
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 155 bits (391), Expect = 1e-37 Identities = 74/141 (52%), Positives = 98/141 (69%) Frame = -2 Query: 634 KREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSG 455 +R K + ++L + LKKY P SAPA A+Q IDKT++RF+ Y GLLCG+DGLPHLI G Sbjct: 41 RRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDG 100 Query: 454 DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFI 275 H GEF PG+LFLYIAG+IGW GRSYL AV+ +EIIID+ +A + + +GF+ Sbjct: 101 RWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFV 160 Query: 274 WPVAAYRELINGDLVVDDADI 212 WP+AA +E +G L D +I Sbjct: 161 WPLAALQEFSSGKLTARDEEI 181
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 146 bits (368), Expect = 6e-35 Identities = 77/146 (52%), Positives = 99/146 (67%), Gaps = 4/146 (2%) Frame = -2 Query: 637 AKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVS 458 AK EK+ +K L LK+Y DSAPA+A++AT+++TK RF NY K GLLCG+DGLPHLI Sbjct: 77 AKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIAD 136 Query: 457 GDQR----HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARII 290 H GE P FLY+AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ Sbjct: 137 PGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLA 196 Query: 289 PRGFIWPVAAYRELINGDLVVDDADI 212 +G WP+AA +EL G L+ + +I Sbjct: 197 WQGAGWPLAAVQELQRGTLLEKEENI 222
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 134 bits (337), Expect = 2e-31 Identities = 66/140 (47%), Positives = 85/140 (60%) Frame = -2 Query: 631 REKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGD 452 R ++KKL + L Y +S +I+ I+KTK RF+ Y K LLCG DGLPHLI GD Sbjct: 43 RLNNNIKKLENKLTYYKQNSQEYTSIKQQIEKTKIRFDKYAKSSLLCGEDGLPHLITDGD 102 Query: 451 QRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIW 272 +H GEF P VLF+YIAGWIGW G+ YL KP EIIID+ A + + GF W Sbjct: 103 WQHSGEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAW 162 Query: 271 PVAAYRELINGDLVVDDADI 212 P+ A +E NG L+ + +I Sbjct: 163 PILALKEFKNGSLLASNDEI 182
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 124 bits (311), Expect = 2e-28 Identities = 61/113 (53%), Positives = 77/113 (68%) Frame = -2 Query: 550 ATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRS 371 A + K RFENY + LCG+DGLPHLIV G H G+FI P +LFLYIAGWIGWVGRS Sbjct: 44 AATPQAKARFENYSQ--ALCGADGLPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWVGRS 101 Query: 370 YLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 YL A+ +K A +EI+IDV LA + GF WP+AA++E +G L+ +I Sbjct: 102 YLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKADEI 154
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 122 bits (305), Expect = 1e-27 Identities = 62/120 (51%), Positives = 79/120 (65%), Gaps = 2/120 (1%) Frame = -2 Query: 565 ALAIQATIDKT--KRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGW 392 A A+ T D ++RFE Y + LCG DGLPHL+V G G+F+ P VLFLYIAGW Sbjct: 42 AAAVNTTADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGW 99 Query: 391 IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 IGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L D +I Sbjct: 100 IGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 122 bits (305), Expect = 1e-27 Identities = 62/120 (51%), Positives = 79/120 (65%), Gaps = 2/120 (1%) Frame = -2 Query: 565 ALAIQATIDKT--KRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGW 392 A A+ T D ++RFE Y + LCG DGLPHL+V G G+F+ P VLFLYIAGW Sbjct: 42 AAAVNTTADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGW 99 Query: 391 IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 IGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L D +I Sbjct: 100 IGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 116 bits (291), Expect = 5e-26 Identities = 56/107 (52%), Positives = 73/107 (68%) Frame = -2 Query: 532 KRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVS 353 K R E Y LCG +G PHLIV G H G+F+ P +LFLYIAGWIGWVGRSYLI + Sbjct: 56 KIRAERYAS--ALCGPEGYPHLIVDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIR 113 Query: 352 GEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 K P M+E++I+V LA + + GF+WP+AA E +G LV+ D++I Sbjct: 114 ESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKDSEI 160
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 113 bits (282), Expect = 5e-25 Identities = 53/107 (49%), Positives = 72/107 (67%) Frame = -2 Query: 532 KRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVS 353 ++RFE Y + LCG +G PHLIV G G+F+ P +LFLYIAGWIGWVGR+YL A+ Sbjct: 55 QKRFERYSQ--ALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIK 112 Query: 352 GEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 + +EI +D+ LA II GF WP AA +EL++G+L D++I Sbjct: 113 KDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 112 bits (280), Expect = 9e-25 Identities = 52/107 (48%), Positives = 72/107 (67%) Frame = -2 Query: 532 KRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVS 353 ++RFE Y + LCG +G PHLIV G G+F+ P +LFLYIAGWIGWVGR+YL A+ Sbjct: 55 QKRFERYSQ--ALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIK 112 Query: 352 GEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 + +EI +D+ +A II GF WP AA +EL++G+L D++I Sbjct: 113 KDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 108 bits (269), Expect = 2e-23 Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 1/108 (0%) Frame = -2 Query: 532 KRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVS 353 K+RFE Y + LCG +GLPHLIV G H G+F+ P +LFLYIAGWIGWVGR+YL + Sbjct: 55 KKRFERYSQ--ALCGPEGLPHLIVDGRLDHAGDFLIPSILFLYIAGWIGWVGRAYLQTIK 112 Query: 352 GE-KKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 212 + +EI I++ +A I+ GF WP AA +E ++G+L D +I Sbjct: 113 KQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAKDEEI 160
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 97.4 bits (241), Expect = 3e-20 Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 9/125 (7%) Frame = -2 Query: 559 AIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSG---------DQRHWGEFITPGVLFL 407 A QAT K RFE Y K CG DGLPHL+++ ++ H G+ + PG +F+ Sbjct: 55 ASQATTPKDIARFERYSKAS--CGDDGLPHLVIAATIEPWGALANRHHEGDILIPGHIFI 112 Query: 406 YIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVV 227 Y+AG IGW GR YL A K PA EIIID LA + + +G WPV A ++ +GDL Sbjct: 113 YVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLRE 172 Query: 226 DDADI 212 D +I Sbjct: 173 KDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 90.5 bits (223), Expect = 4e-18 Identities = 50/105 (47%), Positives = 62/105 (59%) Frame = -2 Query: 535 TKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAV 356 TK++FE Y CG DG PHLI SG G+F+ P VLFL+IAG +GW GR YL Sbjct: 75 TKQKFERYDT--AYCGQDGYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYL--- 129 Query: 355 SGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 221 E K EIIID+ A + + G IWPV A ELI+G + V + Sbjct: 130 -AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPE 173
>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development| regulatory protein 1) (RAE-28) Length = 1012 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 378 PTQPIQPAM*RKSTPGVMNSPQCRWSPLTMRWGRPSEPQSRPNLP 512 PTQ + P+ ++ ++ P + SPLT+ P EP S+P +P Sbjct: 462 PTQQVPPSQSQQQAQTLVVQPMLQSSPLTL----PPEPTSKPPIP 502
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -2 Query: 175 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 56 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>EFTS_RALSO (Q8XZJ0) Elongation factor Ts (EF-Ts)| Length = 292 Score = 30.0 bits (66), Expect = 6.1 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +2 Query: 338 GLLLAADGDEVAASDPADPAGDVEEEHAGGDELAPVPLVAAD 463 G+++A DGDEVAA D A A ++ DE+ P L+A + Sbjct: 159 GVMVAFDGDEVAAKDVAMHAAAMKPVALSSDEV-PAELIAKE 199
>HIS82_BORPE (Q7VSZ0) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 2) Length = 365 Score = 30.0 bits (66), Expect = 6.1 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 18/144 (12%) Frame = -2 Query: 595 LKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCG--SDGLPHLIVSGDQRHWGEFITP 422 L +Y + PAL Q ++ FE + GLL G SD L HLI+ ++P Sbjct: 61 LNRYPAAANPALQAQV-----RQAFEVPAQAGLLFGNGSDELIHLIIQACCEPGDTVLSP 115 Query: 421 GVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAA------RII-------PRG 281 F+Y R G A E+ + LAA +++ P G Sbjct: 116 WPSFVYF----DMAARLSHARFVGVPLTAGLELDLPATLAAIEAHQPKVVFLALPNNPTG 171 Query: 280 FIWPVAAYRELIN---GDLVVDDA 218 +WP AA R +++ G +V+D+A Sbjct: 172 DLWPDAAVRAILDAAPGLVVLDEA 195
>HIS82_BORPA (Q7W2Y3) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 2) Length = 365 Score = 30.0 bits (66), Expect = 6.1 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 18/144 (12%) Frame = -2 Query: 595 LKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCG--SDGLPHLIVSGDQRHWGEFITP 422 L +Y + PAL Q ++ FE + GLL G SD L HLI+ ++P Sbjct: 61 LNRYPAAANPALQAQV-----RQAFEVPAQAGLLFGNGSDELIHLIIQACCEPGDTVLSP 115 Query: 421 GVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAA------RII-------PRG 281 F+Y R G A E+ + LAA +++ P G Sbjct: 116 WPSFVYF----DMAARLSHARFVGVPLTAGLELDLPATLAAIEAHQPKVVFLALPNNPTG 171 Query: 280 FIWPVAAYRELIN---GDLVVDDA 218 +WP AA R +++ G +V+D+A Sbjct: 172 GLWPDAAVRAILDAAPGLVVLDEA 195
>HIS82_BORBR (Q7WDY3) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 2) Length = 365 Score = 30.0 bits (66), Expect = 6.1 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 18/144 (12%) Frame = -2 Query: 595 LKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCG--SDGLPHLIVSGDQRHWGEFITP 422 L +Y + PAL Q ++ FE + GLL G SD L HLI+ ++P Sbjct: 61 LNRYPAAANPALQAQV-----RQAFEVPAQAGLLFGNGSDELIHLIIQACCEPGDTVLSP 115 Query: 421 GVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAA------RII-------PRG 281 F+Y R G A E+ + LAA +++ P G Sbjct: 116 WPSFVYF----DMAARLSHARFVGVPLTAGLELDLPATLAAIEAHQPKVVFLALPNNPTG 171 Query: 280 FIWPVAAYRELIN---GDLVVDDA 218 +WP AA R +++ G +V+D+A Sbjct: 172 GLWPDAAVRAILDAAPGLVVLDEA 195
>BTBD4_HUMAN (Q86UZ6) BTB/POZ domain-containing protein 4 (Zinc finger protein| 340) Length = 589 Score = 30.0 bits (66), Expect = 6.1 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 359 GDEVAASDPADPAGDVEEEHAGGDELAPVPLVAADD 466 GD DP DP G+ EE + LAP + ADD Sbjct: 530 GDGPYLEDPEDPRGEAEELGEDDEGLAPEDALLADD 565
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +1 Query: 49 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 150 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,412,556 Number of Sequences: 219361 Number of extensions: 1428042 Number of successful extensions: 4876 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4558 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4866 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
