ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39o22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C13, full insert sequence Length = 2881 Score = 591 bits (298), Expect = e-165 Identities = 463/518 (89%) Strand = Plus / Minus Query: 219 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 278 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 2610 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 2551 Query: 279 agttgaatgaaccgcaaagcatccttccggatgctgggggttccttcaaacaaggaagct 338 ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 2550 agttgaatgaaccgcaaggcatctttccggatactgggggttccttcaaataaggaagct 2491 Query: 339 agactttccggagcaacaataaagacatttgccatgattccaagcagttcaaacttctca 398 |||||||| |||||||| || || ||||| |||||||||||||||||||||||||| ||| Sbjct: 2490 agactttcaggagcaacgatgaatacattggccatgattccaagcagttcaaacttttca 2431 Query: 399 tctatggagggggcattgaagctacggacaaactccccatactcagtaatgtcacgtttc 458 ||||| || ||||||||||||||||| || || ||||| |||||||| || ||||||||| Sbjct: 2430 tctatcgatggggcattgaagctacgaacgaattccccgtactcagtgatatcacgtttc 2371 Query: 459 aaccgtagcccaccactcggactaaacgtgaacttttgccaatgattaagaaggcccttg 518 | ||||| ||||||||| |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 2370 agccgtaacccaccactgggactaaatgtgaacttctgccaatgattgagtagcccctta 2311 Query: 519 tgcatgcggtttcccaattcagtcaaaaaggactgtttgtttagaccttctagggcactg 578 |||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 2310 tgcaagcgatttcccagctcagtcaaaaaggactgtttattgagaccttctagagcactg 2251 Query: 579 aatgcaacctcgagaacacgagaaaggtaggctacaattcttatgcaagcattcgtaggc 638 ||||||||||||||||||||||| || |||||||||||||||||||||||||| || || Sbjct: 2250 aatgcaacctcgagaacacgagatagataggctacaattcttatgcaagcattggttggt 2191 Query: 639 cgatggtctggtgcagctccatcatctggtgaccgataatctgtagctttctgttctgaa 698 ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 2190 cgatgatccggtgcagctccatcatctggtgttcgataatctgtagccttctgttctgaa 2131 Query: 699 gataacaatctttcaacctcacacatgactgtatcaat 736 || | |||||||||||||||| ||||||| |||||||| Sbjct: 2130 gacagcaatctttcaacctcagacatgacggtatcaat 2093
>dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D06, full insert sequence Length = 1535 Score = 591 bits (298), Expect = e-165 Identities = 463/518 (89%) Strand = Plus / Minus Query: 219 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 278 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 1257 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 1198 Query: 279 agttgaatgaaccgcaaagcatccttccggatgctgggggttccttcaaacaaggaagct 338 ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 1197 agttgaatgaaccgcaaggcatctttccggatactgggggttccttcaaataaggaagct 1138 Query: 339 agactttccggagcaacaataaagacatttgccatgattccaagcagttcaaacttctca 398 |||||||| |||||||| || || ||||| |||||||||||||||||||||||||| ||| Sbjct: 1137 agactttcaggagcaacgatgaatacattggccatgattccaagcagttcaaacttttca 1078 Query: 399 tctatggagggggcattgaagctacggacaaactccccatactcagtaatgtcacgtttc 458 ||||| || ||||||||||||||||| || || ||||| |||||||| || ||||||||| Sbjct: 1077 tctatcgatggggcattgaagctacgaacgaattccccgtactcagtgatatcacgtttc 1018 Query: 459 aaccgtagcccaccactcggactaaacgtgaacttttgccaatgattaagaaggcccttg 518 | ||||| ||||||||| |||||||| |||||||| ||||||||||| || || ||||| Sbjct: 1017 agccgtaacccaccactgggactaaatgtgaacttctgccaatgattgagtagcccctta 958 Query: 519 tgcatgcggtttcccaattcagtcaaaaaggactgtttgtttagaccttctagggcactg 578 |||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 957 tgcaagcgatttcccagctcagtcaaaaaggactgtttattgagaccttctagagcactg 898 Query: 579 aatgcaacctcgagaacacgagaaaggtaggctacaattcttatgcaagcattcgtaggc 638 ||||||||||||||||||||||| || |||||||||||||||||||||||||| || || Sbjct: 897 aatgcaacctcgagaacacgagatagataggctacaattcttatgcaagcattggttggt 838 Query: 639 cgatggtctggtgcagctccatcatctggtgaccgataatctgtagctttctgttctgaa 698 ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 837 cgatgatccggtgcagctccatcatctggtgttcgataatctgtagccttctgttctgaa 778 Query: 699 gataacaatctttcaacctcacacatgactgtatcaat 736 || | |||||||||||||||| ||||||| |||||||| Sbjct: 777 gacagcaatctttcaacctcagacatgacggtatcaat 740
>gb|AY110699.1| Zea mays CL19324_1 mRNA sequence Length = 967 Score = 303 bits (153), Expect = 4e-79 Identities = 300/354 (84%) Strand = Plus / Plus Query: 297 gcatccttccggatgctgggggttccttcaaacaaggaagctagactttccggagcaaca 356 |||||||| |||||||| |||||||||||| ||| |||| |||||| ||||||||| Sbjct: 358 gcatcctttcggatgctnnnnnttccttcaaacagggatgctaaactttctggagcaaca 417 Query: 357 ataaagacatttgccatgattccaagcagttcaaacttctcatctatggagggggcattg 416 || ||||| || |||| ||||| | |||||| ||||||||||||||||| ||||| Sbjct: 418 atgaagacgttcgccacaattcccaacagttcgaacttctcatctatggannnnncattg 477 Query: 417 aagctacggacaaactccccatactcagtaatgtcacgtttcaaccgtagcccaccactc 476 |||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||| Sbjct: 478 aagctacgaacgaaatccccatattcagttatgtcacgtttcaaccgtaggccaccactg 537 Query: 477 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttcccaat 536 |||||||| |||||||| |||||||||||||| || ||||| |||| ||| ||||||| Sbjct: 538 ggactaaatgtgaacttctgccaatgattaagcagccccttatgcaagcgatttcccagc 597 Query: 537 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 596 |||||| |||||||||||| || ||||| |||||||||||||||||||| |||||| Sbjct: 598 tcagtcnnnnnggactgtttgttgaggccttcaagggcactgaatgcaacctcaagaaca 657 Query: 597 cgagaaaggtaggctacaattcttatgcaagcattcgtaggccgatggtctggt 650 ||||| || ||||||||||||||||| |||||||| || |||||||| |||||| Sbjct: 658 cgagagagataggctacaattcttatacaagcattagttggccgatgatctggt 711 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 680 tgtagctttctgttctgaagataacaatctttcaacctcacacatgactgtatcaatgca 739 |||||| |||||||||||||| |||||||||||||||||| |||| || |||||||| || Sbjct: 741 tgtagccttctgttctgaagacaacaatctttcaacctcagacataacagtatcaataca 800 Query: 740 ttgta 744 ||||| Sbjct: 801 ttgta 805
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 537 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 596 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 7630808 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaaca 7630867 Query: 597 cgagaaaggtaggctacaattct 619 ||||| || |||||||||||||| Sbjct: 7630868 cgagatagataggctacaattct 7630890 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 618 cttatgcaagcattcgtaggccgatggtctggtgcagctccatcatctggtgaccgataa 677 |||||||||||||| || || ||||| || |||||||||||||||||||||| |||||| Sbjct: 7630961 cttatgcaagcattggttggtcgatgatccggtgcagctccatcatctggtgttcgataa 7631020 Query: 678 tctgtagctttctgttctgaagataacaatctttcaacct 717 |||||||| |||||||||||||| | |||||||||||||| Sbjct: 7631021 tctgtagccttctgttctgaagacagcaatctttcaacct 7631060 Score = 113 bits (57), Expect = 9e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 375 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 434 |||||||||||||||||||| |||||||| || ||||||||||||||||| || || ||| Sbjct: 7630216 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630275 Query: 435 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 475 || |||||||| || |||||||||| ||||| ||||||||| Sbjct: 7630276 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630316 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 289 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 348 ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 7630050 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7630109 Query: 349 gagcaacaataaagacatttgccatg 374 ||||||| || || ||||| |||||| Sbjct: 7630110 gagcaacgatgaatacattggccatg 7630135 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 219 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 278 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 7629893 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629952 Query: 279 agttgaatgaacc 291 ||||||||||||| Sbjct: 7629953 agttgaatgaacc 7629965 Score = 50.1 bits (25), Expect = 0.011 Identities = 49/57 (85%) Strand = Plus / Plus Query: 477 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 533 |||||||| |||||||| ||||||||||| || || ||||| |||| ||| |||||| Sbjct: 7630394 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630450
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 537 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 596 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 7630689 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaaca 7630748 Query: 597 cgagaaaggtaggctacaattct 619 ||||| || |||||||||||||| Sbjct: 7630749 cgagatagataggctacaattct 7630771 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 618 cttatgcaagcattcgtaggccgatggtctggtgcagctccatcatctggtgaccgataa 677 |||||||||||||| || || ||||| || |||||||||||||||||||||| |||||| Sbjct: 7630842 cttatgcaagcattggttggtcgatgatccggtgcagctccatcatctggtgttcgataa 7630901 Query: 678 tctgtagctttctgttctgaagataacaatctttcaacct 717 |||||||| |||||||||||||| | |||||||||||||| Sbjct: 7630902 tctgtagccttctgttctgaagacagcaatctttcaacct 7630941 Score = 113 bits (57), Expect = 9e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 375 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 434 |||||||||||||||||||| |||||||| || ||||||||||||||||| || || ||| Sbjct: 7630097 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630156 Query: 435 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 475 || |||||||| || |||||||||| ||||| ||||||||| Sbjct: 7630157 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630197 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 289 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 348 ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 7629931 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7629990 Query: 349 gagcaacaataaagacatttgccatg 374 ||||||| || || ||||| |||||| Sbjct: 7629991 gagcaacgatgaatacattggccatg 7630016 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 219 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 278 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 7629774 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629833 Query: 279 agttgaatgaacc 291 ||||||||||||| Sbjct: 7629834 agttgaatgaacc 7629846 Score = 50.1 bits (25), Expect = 0.011 Identities = 49/57 (85%) Strand = Plus / Plus Query: 477 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 533 |||||||| |||||||| ||||||||||| || || ||||| |||| ||| |||||| Sbjct: 7630275 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630331
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 537 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaaca 596 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 18201 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaaca 18260 Query: 597 cgagaaaggtaggctacaattct 619 ||||| || |||||||||||||| Sbjct: 18261 cgagatagataggctacaattct 18283 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 618 cttatgcaagcattcgtaggccgatggtctggtgcagctccatcatctggtgaccgataa 677 |||||||||||||| || || ||||| || |||||||||||||||||||||| |||||| Sbjct: 18354 cttatgcaagcattggttggtcgatgatccggtgcagctccatcatctggtgttcgataa 18413 Query: 678 tctgtagctttctgttctgaagataacaatctttcaacct 717 |||||||| |||||||||||||| | |||||||||||||| Sbjct: 18414 tctgtagccttctgttctgaagacagcaatctttcaacct 18453 Score = 113 bits (57), Expect = 9e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 375 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 434 |||||||||||||||||||| |||||||| || ||||||||||||||||| || || ||| Sbjct: 17609 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 17668 Query: 435 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 475 || |||||||| || |||||||||| ||||| ||||||||| Sbjct: 17669 ccgtactcagtgatatcacgtttcagccgtaacccaccact 17709 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 289 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 348 ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 17443 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 17502 Query: 349 gagcaacaataaagacatttgccatg 374 ||||||| || || ||||| |||||| Sbjct: 17503 gagcaacgatgaatacattggccatg 17528 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 219 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 278 ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 17286 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 17345 Query: 279 agttgaatgaacc 291 ||||||||||||| Sbjct: 17346 agttgaatgaacc 17358 Score = 50.1 bits (25), Expect = 0.011 Identities = 49/57 (85%) Strand = Plus / Plus Query: 477 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 533 |||||||| |||||||| ||||||||||| || || ||||| |||| ||| |||||| Sbjct: 17787 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 17843
>gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete sequence Length = 117225 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 411 gcattgaagctacggacaaactccccatactcagtaatgtcacgtttca 459 |||||||| ||||| |||||||| |||||||||||||||||||| |||| Sbjct: 73050 gcattgaaactacgcacaaactctccatactcagtaatgtcacgcttca 73098
>gb|AC146775.8| Medicago truncatula clone mth2-95g14, complete sequence Length = 139593 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 ttctgaagataacaatctttc 712 ||||||||||||||||||||| Sbjct: 113902 ttctgaagataacaatctttc 113882
>emb|BX927256.13| Zebrafish DNA sequence from clone CH211-272F14 in linkage group 5, complete sequence Length = 130184 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 ccttgaagtaaattttattca 224 ||||||||||||||||||||| Sbjct: 55100 ccttgaagtaaattttattca 55080
>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence Length = 156107 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 atttgccatgattccaagcag 385 ||||||||||||||||||||| Sbjct: 57011 atttgccatgattccaagcag 56991
>dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13, map 22, complete sequences Length = 158703 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 aagtaaattttattcagacat 229 ||||||||||||||||||||| Sbjct: 92558 aagtaaattttattcagacat 92538 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,514,529 Number of Sequences: 3902068 Number of extensions: 6514529 Number of successful extensions: 123884 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123780 Number of HSP's gapped (non-prelim): 103 length of query: 746 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 723 effective length of database: 17,143,297,704 effective search space: 12394604239992 effective search space used: 12394604239992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
