ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39o21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106058.1| Zea mays PCO147797 mRNA sequence 452 e-124
2dbj|AK103729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 8e-65
3ref|NM_190598.1| Oryza sativa (japonica cultivar-group), predic... 252 1e-63
4ref|NM_190596.1| Oryza sativa (japonica cultivar-group), predic... 204 3e-49
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
7emb|AJ890025.1| Zea mays partial mRNA for putative aldose reduct... 153 9e-34
8dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
9gb|AC003999.2| Homo sapiens PAC clone RP5-1139P1 from 7, complet... 44 0.60
10gb|AC104012.11| Homo sapiens chromosome 8, clone RP11-281N10, co... 44 0.60
11emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete ch... 42 2.4
12ref|XM_764061.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 2.4
13emb|BX936390.7| Zebrafish DNA sequence from clone DKEY-6E2 in li... 42 2.4
14gb|M94085.1|RHMDGK R.meliloti ORF1, complete cds; ORF2, complete... 42 2.4
15ref|NM_106082.1| Arabidopsis thaliana unknown protein AT1G74220 ... 40 9.4
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.4
17emb|AM039950.1| Xanthomonas campestris pv. vesicatoria plasmid p... 40 9.4
18gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, com... 40 9.4
19gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequ... 40 9.4
20gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s... 40 9.4
21emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chro... 40 9.4
22gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's H... 40 9.4
23emb|X97606.1|MSRNAAAA M.sativa mRNA translated from abscisic act... 40 9.4
24emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 9.4
25emb|BX914223.9| Zebrafish DNA sequence from clone DKEY-98M24 in ... 40 9.4
26emb|AL512647.14| Mouse DNA sequence from clone RP23-47A2 on chro... 40 9.4
27gb|AC110788.3| Homo sapiens BAC clone RP11-473D24 from 4, comple... 40 9.4
28gb|AC183100.3| Pan troglodytes BAC clone CH251-736D14 from chrom... 40 9.4
29ref|XM_626858.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.4
30gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.4
31gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome... 40 9.4
32dbj|AK076394.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 9.4
33gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
35gb|AC020579.5|AC020579 Arabidopsis thaliana chromosome 1 BAC F1O... 40 9.4
36gb|AC009021.8| Homo sapiens chromosome 16 clone RP11-105C19, com... 40 9.4
37dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.4
38gb|AC113178.10| Mus musculus chromosome 15, clone RP23-395K11, c... 40 9.4
39gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 9.4
40gb|AC147989.4| Mus musculus BAC clone RP24-468I14 from 18, compl... 40 9.4 
>gb|AY106058.1| Zea mays PCO147797 mRNA sequence
          Length = 1497

 Score =  452 bits (228), Expect = e-124
 Identities = 330/364 (90%)
 Strand = Plus / Minus

                                                                        
Query: 324  tcccacagctcctcgtgggtcttgtaaacgctctgtggattaacggcgaagttgcctctg 383
            ||||| |||||||| ||||||||||||||||||| |||||||||   |||||||||||| 
Sbjct: 1146 tcccagagctcctcatgggtcttgtaaacgctctctggattaacaatgaagttgcctcta 1087

                                                                        
Query: 384  agcagcctagcctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaa 443
            || ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct: 1086 agtagcctagcctgcttaatctcagagaactttgcaagcaagtcatctggaattgaccaa 1027

                                                                        
Query: 444  tcatgaacatcaaggttttgttttatcctttcctgattcgtgctctttggtagcacgctg 503
            |||| ||||||||||||||| ||||||||||| | ||||||||||||||| || || |||
Sbjct: 1026 tcataaacatcaaggttttgctttatcctttcttcattcgtgctctttggaagaacactg 967

                                                                        
Query: 504  tgacccgtctgaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctcg 563
            |||||| |||||||||||||||||||||||||||||||||  || || ||||||||||| 
Sbjct: 966  tgacccatctgaatgttccagcgcagagccacttgtgcagaagttttcccgagtttctca 907

                                                                        
Query: 564  gatattgagatgattattggttctttaaggacattaccgttcatccaagtagtaccaggt 623
            | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 906  gctattgagatgattattggttctttaaggacattaccattcatccaagttgtaccaggt 847

                                                                        
Query: 624  gaacctagaggcgagtaagcactaagatgaacaccagctgactgacaaaagttgtggagc 683
            |||||||| || ||||||||| | ||||||||||||| ||||||||||||| | ||||||
Sbjct: 846  gaacctagtggtgagtaagcagttagatgaacaccagttgactgacaaaagctatggagc 787

                
Query: 684  ttag 687
            ||||
Sbjct: 786  ttag 783
to top
>dbj|AK103729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E18, full
            insert sequence
          Length = 1414

 Score =  256 bits (129), Expect = 8e-65
 Identities = 315/377 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  tcctaaatctcactgtcccacagctcctcgtgggtcttgtaaacgctctgtggattaacg 368
            |||||||| || |||||||| |||||||| |||||||||||||||||||||||||| || 
Sbjct: 1211 tcctaaatttccctgtcccagagctcctcatgggtcttgtaaacgctctgtggattgaca 1152

                                                                        
Query: 369  gcgaagttgcctctgagcagcctagcctgcttaatttccgagaactttgcaagcacgtca 428
              ||||||||| |||||||||||| |||||||||| ||||||||||| ||||||| ||| 
Sbjct: 1151 atgaagttgcccctgagcagcctaacctgcttaatctccgagaacttagcaagcaagtcc 1092

                                                                        
Query: 429  tctggaattgaccaatcatgaacatcaaggttttgttttatcctttcctgattcgtgctc 488
            |||||||| ||||| |||| |||||| | ||| || ||||||||||| | | ||   || 
Sbjct: 1091 tctggaatagaccagtcataaacatctaagttctgctttatcctttcttcactcacactt 1032

                                                                        
Query: 489  tttggtagcacgctgtgacccgtctgaatgttccagcgcagagccacttgtgcaggtgtc 548
            ||||| || || ||||||||| ||||||||||||||||||| |||||||||||||| || 
Sbjct: 1031 tttgggagtacactgtgacccatctgaatgttccagcgcagcgccacttgtgcaggagtt 972

                                                                        
Query: 549  ttgccgagtttctcggatattgagatgattattggttctttaaggacattaccgttcatc 608
            ||||| || ||||| |  || ||||| || || ||||| ||||||||||| |||||||| 
Sbjct: 971  ttgccaagcttctctgcaatcgagataatgatgggttccttaaggacattgccgttcata 912

                                                                        
Query: 609  caagtagtaccaggtgaacctagaggcgagtaagcactaagatgaacaccagctgactga 668
             | || | ||||||||||||||| |||||||| |||  ||||||||  || | |||||| 
Sbjct: 911  aatgttgaaccaggtgaacctagcggcgagtatgcagaaagatgaatgcccgttgactgg 852

                             
Query: 669  caaaagttgtggagctt 685
            |||||||| || |||||
Sbjct: 851  caaaagttatgcagctt 835
to top
>ref|NM_190598.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 936

 Score =  252 bits (127), Expect = 1e-63
 Identities = 313/375 (83%)
 Strand = Plus / Minus

                                                                       
Query: 311 ctaaatctcactgtcccacagctcctcgtgggtcttgtaaacgctctgtggattaacggc 370
           |||||| || |||||||| |||||||| |||||||||||||||||||||||||| ||   
Sbjct: 936 ctaaatttccctgtcccagagctcctcatgggtcttgtaaacgctctgtggattgacaat 877

                                                                       
Query: 371 gaagttgcctctgagcagcctagcctgcttaatttccgagaactttgcaagcacgtcatc 430
           ||||||||| |||||||||||| |||||||||| ||||||||||| ||||||| ||| ||
Sbjct: 876 gaagttgcccctgagcagcctaacctgcttaatctccgagaacttagcaagcaagtcctc 817

                                                                       
Query: 431 tggaattgaccaatcatgaacatcaaggttttgttttatcctttcctgattcgtgctctt 490
           |||||| ||||| |||| |||||| | ||| || ||||||||||| | | ||   || ||
Sbjct: 816 tggaatagaccagtcataaacatctaagttctgctttatcctttcttcactcacactttt 757

                                                                       
Query: 491 tggtagcacgctgtgacccgtctgaatgttccagcgcagagccacttgtgcaggtgtctt 550
           ||| || || ||||||||| ||||||||||||||||||| |||||||||||||| || ||
Sbjct: 756 tgggagtacactgtgacccatctgaatgttccagcgcagcgccacttgtgcaggagtttt 697

                                                                       
Query: 551 gccgagtttctcggatattgagatgattattggttctttaaggacattaccgttcatcca 610
           ||| || ||||| |  || ||||| || || ||||| ||||||||||| ||||||||  |
Sbjct: 696 gccaagcttctctgcaatcgagataatgatgggttccttaaggacattgccgttcataaa 637

                                                                       
Query: 611 agtagtaccaggtgaacctagaggcgagtaagcactaagatgaacaccagctgactgaca 670
            || | ||||||||||||||| |||||||| |||  ||||||||  || | |||||| ||
Sbjct: 636 tgttgaaccaggtgaacctagcggcgagtatgcagaaagatgaatgcccgttgactggca 577

                          
Query: 671 aaagttgtggagctt 685
           |||||| || |||||
Sbjct: 576 aaagttatgcagctt 562
to top
>ref|NM_190596.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 936

 Score =  204 bits (103), Expect = 3e-49
 Identities = 298/363 (82%)
 Strand = Plus / Minus

                                                                       
Query: 323 gtcccacagctcctcgtgggtcttgtaaacgctctgtggattaacggcgaagttgcctct 382
           |||||| |||||||| |||||||| |||||||| || ||||||||   || || ||| ||
Sbjct: 924 gtcccagagctcctcatgggtcttataaacgctgtggggattaacaatgacgtcgcccct 865

                                                                       
Query: 383 gagcagcctagcctgcttaatttccgagaactttgcaagcacgtcatctggaattgacca 442
           ||| |||||| |||||||||| || ||||||||  |||||| ||| |||||||| |||||
Sbjct: 864 gagaagcctaacctgcttaatctcagagaacttaacaagcaagtcctctggaatagacca 805

                                                                       
Query: 443 atcatgaacatcaaggttttgttttatcctttcctgattcgtgctctttggtagcacgct 502
            |||| |||||| | ||| || ||||||||||| |   ||   || ||||| || || ||
Sbjct: 804 gtcataaacatctatgttctgctttatcctttcttcggtcacactttttgggagtacact 745

                                                                       
Query: 503 gtgacccgtctgaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctc 562
           ||||||| |||||||||||||| |||| |||||||||||||| || |||||||| |||||
Sbjct: 744 gtgacccatctgaatgttccagtgcagtgccacttgtgcaggagttttgccgagcttctc 685

                                                                       
Query: 563 ggatattgagatgattattggttctttaaggacattaccgttcatccaagtagtaccagg 622
            |  ||||||||||| |  | ||| |||||||| |||| ||||||||| || | ||||||
Sbjct: 684 tgcaattgagatgatgacggattccttaaggacgttactgttcatccatgttgaaccagg 625

                                                                       
Query: 623 tgaacctagaggcgagtaagcactaagatgaacaccagctgactgacaaaagttgtggag 682
           |||||||||||||||||| |||  ||||||||| |||| |||||| || ||||| || ||
Sbjct: 624 tgaacctagaggcgagtatgcagaaagatgaacgccagttgactggcagaagttatgtag 565

              
Query: 683 ctt 685
           |||
Sbjct: 564 ctt 562
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 6e-35
 Identities = 205/247 (82%)
 Strand = Plus / Minus

                                                                            
Query: 394      cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
                |||||||||| ||||||||||| ||||||| ||| |||||||| ||||| |||| |||||
Sbjct: 36406754 cctgcttaatctccgagaacttagcaagcaagtcctctggaatagaccagtcataaacat 36406695

                                                                            
Query: 454      caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtgacccgtct 513
                | | ||| || ||||||||||| | | ||   || ||||| || || ||||||||| |||
Sbjct: 36406694 ctaagttctgctttatcctttcttcactcacactttttgggagtacactgtgacccatct 36406635

                                                                            
Query: 514      gaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctcggatattgaga 573
                |||||||||||||||| |||||||||||||| || ||||| || ||||| |  || ||||
Sbjct: 36406634 gaatgttccagcgcagcgccacttgtgcaggagttttgccaagcttctctgcaatcgaga 36406575

                                                                            
Query: 574      tgattattggttctttaaggacattaccgttcatccaagtagtaccaggtgaacctagag 633
                | || || ||||| ||||||||||| ||||||||  | || | ||||||||||||||| |
Sbjct: 36406574 taatgatgggttccttaaggacattgccgttcataaatgttgaaccaggtgaacctagcg 36406515

                       
Query: 634      gcgagta 640
                |||||||
Sbjct: 36406514 gcgagta 36406508



 Score =  149 bits (75), Expect = 1e-32
 Identities = 204/247 (82%)
 Strand = Plus / Minus

                                                                            
Query: 394      cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
                |||||||||| || ||||||||  |||||| ||| |||||||| ||||| |||| |||||
Sbjct: 36399251 cctgcttaatctcagagaacttaacaagcaagtcctctggaatagaccagtcataaacat 36399192

                                                                            
Query: 454      caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtgacccgtct 513
                | | ||| || ||||||||||| |   ||   || ||||| || || ||||||||| |||
Sbjct: 36399191 ctatgttctgctttatcctttcttcggtcacactttttgggagtacactgtgacccatct 36399132

                                                                            
Query: 514      gaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctcggatattgaga 573
                ||||||||||| |||| |||||||||||||| || |||||||| ||||| |  |||||||
Sbjct: 36399131 gaatgttccagtgcagtgccacttgtgcaggagttttgccgagcttctctgcaattgaga 36399072

                                                                            
Query: 574      tgattattggttctttaaggacattaccgttcatccaagtagtaccaggtgaacctagag 633
                |||| |  | ||| |||||||| |||| ||||||||| || | |||||||||||||||||
Sbjct: 36399071 tgatgacggattccttaaggacgttactgttcatccatgttgaaccaggtgaacctagag 36399012

                       
Query: 634      gcgagta 640
                |||||||
Sbjct: 36399011 gcgagta 36399005



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                            
Query: 309      tcctaaatctcactgtcccacagctcctcgtgggtcttgtaaacgctctgtggattaacg 368
                |||||||| || |||||||| |||||||| |||||||||||||||||||||||||| || 
Sbjct: 36407643 tcctaaatttccctgtcccagagctcctcatgggtcttgtaaacgctctgtggattgaca 36407584

                                             
Query: 369      gcgaagttgcctctgagcagcctagcctg 397
                  ||||||||| |||||||||||| ||||
Sbjct: 36407583 atgaagttgcccctgagcagcctaacctg 36407555
to top
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0005H10
          Length = 142885

 Score =  157 bits (79), Expect = 6e-35
 Identities = 205/247 (82%)
 Strand = Plus / Minus

                                                                         
Query: 394   cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
             |||||||||| ||||||||||| ||||||| ||| |||||||| ||||| |||| |||||
Sbjct: 58593 cctgcttaatctccgagaacttagcaagcaagtcctctggaatagaccagtcataaacat 58534

                                                                         
Query: 454   caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtgacccgtct 513
             | | ||| || ||||||||||| | | ||   || ||||| || || ||||||||| |||
Sbjct: 58533 ctaagttctgctttatcctttcttcactcacactttttgggagtacactgtgacccatct 58474

                                                                         
Query: 514   gaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctcggatattgaga 573
             |||||||||||||||| |||||||||||||| || ||||| || ||||| |  || ||||
Sbjct: 58473 gaatgttccagcgcagcgccacttgtgcaggagttttgccaagcttctctgcaatcgaga 58414

                                                                         
Query: 574   tgattattggttctttaaggacattaccgttcatccaagtagtaccaggtgaacctagag 633
             | || || ||||| ||||||||||| ||||||||  | || | ||||||||||||||| |
Sbjct: 58413 taatgatgggttccttaaggacattgccgttcataaatgttgaaccaggtgaacctagcg 58354

                    
Query: 634   gcgagta 640
             |||||||
Sbjct: 58353 gcgagta 58347



 Score =  149 bits (75), Expect = 1e-32
 Identities = 204/247 (82%)
 Strand = Plus / Minus

                                                                         
Query: 394   cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
             |||||||||| || ||||||||  |||||| ||| |||||||| ||||| |||| |||||
Sbjct: 51090 cctgcttaatctcagagaacttaacaagcaagtcctctggaatagaccagtcataaacat 51031

                                                                         
Query: 454   caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtgacccgtct 513
             | | ||| || ||||||||||| |   ||   || ||||| || || ||||||||| |||
Sbjct: 51030 ctatgttctgctttatcctttcttcggtcacactttttgggagtacactgtgacccatct 50971

                                                                         
Query: 514   gaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctcggatattgaga 573
             ||||||||||| |||| |||||||||||||| || |||||||| ||||| |  |||||||
Sbjct: 50970 gaatgttccagtgcagtgccacttgtgcaggagttttgccgagcttctctgcaattgaga 50911

                                                                         
Query: 574   tgattattggttctttaaggacattaccgttcatccaagtagtaccaggtgaacctagag 633
             |||| |  | ||| |||||||| |||| ||||||||| || | |||||||||||||||||
Sbjct: 50910 tgatgacggattccttaaggacgttactgttcatccatgttgaaccaggtgaacctagag 50851

                    
Query: 634   gcgagta 640
             |||||||
Sbjct: 50850 gcgagta 50844



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                         
Query: 309   tcctaaatctcactgtcccacagctcctcgtgggtcttgtaaacgctctgtggattaacg 368
             |||||||| || |||||||| |||||||| |||||||||||||||||||||||||| || 
Sbjct: 59482 tcctaaatttccctgtcccagagctcctcatgggtcttgtaaacgctctgtggattgaca 59423

                                          
Query: 369   gcgaagttgcctctgagcagcctagcctg 397
               ||||||||| |||||||||||| ||||
Sbjct: 59422 atgaagttgcccctgagcagcctaacctg 59394
to top
>emb|AJ890025.1| Zea mays partial mRNA for putative aldose reductase (9-24 gene),
           cultivar A69Y, from endosperm tissue
          Length = 548

 Score =  153 bits (77), Expect = 9e-34
 Identities = 119/133 (89%)
 Strand = Plus / Minus

                                                                       
Query: 306 ccttcctaaatctcactgtcccacagctcctcgtgggtcttgtaaacgctctgtggatta 365
           |||||||||| |||||  ||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 133 ccttcctaaagctcaccatcccagagctcctcatgggtcttgtaaacgctctctggatta 74

                                                                       
Query: 366 acggcgaagttgcctctgagcagcctagcctgcttaatttccgagaactttgcaagcacg 425
           ||   |||||||||||| || ||||||||||||||||| || |||||||||||||||| |
Sbjct: 73  acaatgaagttgcctctaagtagcctagcctgcttaatctcagagaactttgcaagcaag 14

                        
Query: 426 tcatctggaattg 438
           |||||||||||||
Sbjct: 13  tcatctggaattg 1
to top
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0446B05
          Length = 149145

 Score =  149 bits (75), Expect = 1e-32
 Identities = 204/247 (82%)
 Strand = Plus / Minus

                                                                          
Query: 394    cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
              |||||||||| || ||||||||  |||||| ||| |||||||| ||||| |||| |||||
Sbjct: 149128 cctgcttaatctcagagaacttaacaagcaagtcctctggaatagaccagtcataaacat 149069

                                                                          
Query: 454    caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtgacccgtct 513
              | | ||| || ||||||||||| |   ||   || ||||| || || ||||||||| |||
Sbjct: 149068 ctatgttctgctttatcctttcttcggtcacactttttgggagtacactgtgacccatct 149009

                                                                          
Query: 514    gaatgttccagcgcagagccacttgtgcaggtgtcttgccgagtttctcggatattgaga 573
              ||||||||||| |||| |||||||||||||| || |||||||| ||||| |  |||||||
Sbjct: 149008 gaatgttccagtgcagtgccacttgtgcaggagttttgccgagcttctctgcaattgaga 148949

                                                                          
Query: 574    tgattattggttctttaaggacattaccgttcatccaagtagtaccaggtgaacctagag 633
              |||| |  | ||| |||||||| |||| ||||||||| || | |||||||||||||||||
Sbjct: 148948 tgatgacggattccttaaggacgttactgttcatccatgttgaaccaggtgaacctagag 148889

                     
Query: 634    gcgagta 640
              |||||||
Sbjct: 148888 gcgagta 148882
to top
>gb|AC003999.2| Homo sapiens PAC clone RP5-1139P1 from 7, complete sequence
          Length = 133457

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 128   aaaaaccacataaataatgaag 149
             ||||||||||||||||||||||
Sbjct: 10571 aaaaaccacataaataatgaag 10592
to top
>gb|AC104012.11| Homo sapiens chromosome 8, clone RP11-281N10, complete sequence
          Length = 170668

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 442   aatcatgaacatcaaggttttgtttt 467
             |||||| |||||||||||||||||||
Sbjct: 50935 aatcatcaacatcaaggttttgtttt 50910
to top
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 543    ggtgtcttgccgagtttctcg 563
              |||||||||||||||||||||
Sbjct: 261049 ggtgtcttgccgagtttctcg 261069
to top
>ref|XM_764061.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_90_25807_22631)
            partial mRNA
          Length = 3177

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 448  gaacatcaaggttttgtttta 468
            |||||||||||||||||||||
Sbjct: 1360 gaacatcaaggttttgtttta 1340
to top
>emb|BX936390.7| Zebrafish DNA sequence from clone DKEY-6E2 in linkage group 6, complete
              sequence
          Length = 168226

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    atgaacatcaaggttttgttt 466
              |||||||||||||||||||||
Sbjct: 112750 atgaacatcaaggttttgttt 112730
to top
>gb|M94085.1|RHMDGK R.meliloti ORF1, complete cds; ORF2, complete cds; and
           diacylglycerol kinase (dgkA) gene, complete cds
          Length = 1258

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 543 ggtgtcttgccgagtttctcg 563
           |||||||||||||||||||||
Sbjct: 419 ggtgtcttgccgagtttctcg 399
to top
>ref|NM_106082.1| Arabidopsis thaliana unknown protein AT1G74220 mRNA, complete cds
          Length = 951

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 taatgaagctgctaacaaca 161
           ||||||||||||||||||||
Sbjct: 621 taatgaagctgctaacaaca 640
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 573     atgattattggttctttaag 592
               ||||||||||||||||||||
Sbjct: 2285900 atgattattggttctttaag 2285919
to top
>emb|AM039950.1| Xanthomonas campestris pv. vesicatoria plasmid pXCV38, complete genome
          Length = 38116

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   cattaccgttcatccaagta 614
             ||||||||||||||||||||
Sbjct: 19334 cattaccgttcatccaagta 19315
to top
>gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, complete sequence
          Length = 191928

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   aaaaccacataaataatgaagctg 152
             ||||||| ||||||||||||||||
Sbjct: 36494 aaaaccaaataaataatgaagctg 36517
to top
>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   tcactgtcccacagctcctc 337
             ||||||||||||||||||||
Sbjct: 63883 tcactgtcccacagctcctc 63902
to top
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 89/112 (79%)
 Strand = Plus / Minus

                                                                         
Query: 394   cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
             |||| |||||||| || ||||| | || || ||| || ||||| |||||||| |  || |
Sbjct: 81579 cctggttaatttcagaaaacttaggaaacaggtcttccggaatcgaccaatcgtatacgt 81520

                                                                 
Query: 454   caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtg 505
             |||| ||||  || |||||  ||| ||| |||||||| ||||||||||||||
Sbjct: 81519 caagattttccttgatcctagcctcattagtgctcttaggtagcacgctgtg 81468
to top
>emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chromosome 9, complete
             sequence
          Length = 117273

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   ttttgttttatcctttcctg 478
             ||||||||||||||||||||
Sbjct: 76518 ttttgttttatcctttcctg 76537
to top
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216194

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aattgaccaatcatgaacat 453
             ||||||||||||||||||||
Sbjct: 82157 aattgaccaatcatgaacat 82176
to top
>emb|X97606.1|MSRNAAAA M.sativa mRNA translated from abscisic activated gene
          Length = 1231

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 89/112 (79%)
 Strand = Plus / Minus

                                                                       
Query: 394 cctgcttaatttccgagaactttgcaagcacgtcatctggaattgaccaatcatgaacat 453
           ||||||||||||| || ||||| | || || ||| || ||||| |||||||| |  || |
Sbjct: 889 cctgcttaatttcagaaaacttgggaaacaagtcttcaggaatagaccaatcgtacacgt 830

                                                               
Query: 454 caaggttttgttttatcctttcctgattcgtgctctttggtagcacgctgtg 505
           |||| ||||  || |||||  ||| ||| |||||||| || |||||||||||
Sbjct: 829 caagatttttcttgatcctagcctcattggtgctcttagggagcacgctgtg 778
to top
>emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 4/20
          Length = 294050

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    ttaatttccgagaactttgc 418
              ||||||||||||||||||||
Sbjct: 271130 ttaatttccgagaactttgc 271111
to top
>emb|BX914223.9| Zebrafish DNA sequence from clone DKEY-98M24 in linkage group 14,
              complete sequence
          Length = 252048

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 566    tattgagatgattattggtt 585
              ||||||||||||||||||||
Sbjct: 194399 tattgagatgattattggtt 194418
to top
>emb|AL512647.14| Mouse DNA sequence from clone RP23-47A2 on chromosome 13 Contains part
             of a novel gene (6620401C13Rik), complete sequence
          Length = 199848

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   ccacataaataatgaagctg 152
             ||||||||||||||||||||
Sbjct: 69114 ccacataaataatgaagctg 69095
to top
>gb|AC110788.3| Homo sapiens BAC clone RP11-473D24 from 4, complete sequence
          Length = 80766

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   ttttgttttatcctttcctg 478
             ||||||||||||||||||||
Sbjct: 49119 ttttgttttatcctttcctg 49100
to top
>gb|AC183100.3| Pan troglodytes BAC clone CH251-736D14 from chromosome 16, complete
             sequence
          Length = 173550

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    aaaatagaacagaagaccaa 68
             ||||||||||||||||||||
Sbjct: 24776 aaaatagaacagaagaccaa 24757
to top
>ref|XM_626858.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_3010),
            partial mRNA
          Length = 7266

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  ataaataatgaagctgctaa 156
            ||||||||||||||||||||
Sbjct: 3754 ataaataatgaagctgctaa 3773
to top
>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081A17, from chromosome 3, complete sequence
          Length = 134821

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   atgattattggttctttaag 592
             ||||||||||||||||||||
Sbjct: 40156 atgattattggttctttaag 40137
to top
>gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome 18, complete sequence
          Length = 193382

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   aaaaccacataaataatgaagctg 152
             ||||||| ||||||||||||||||
Sbjct: 36493 aaaaccaaataaataatgaagctg 36516
to top
>dbj|AK076394.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732490M18 product:unclassifiable, full
            insert sequence
          Length = 3306

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 547  tcttgccgagtttctcggat 566
            ||||||||||||||||||||
Sbjct: 1268 tcttgccgagtttctcggat 1287
to top
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0083D24, complete sequence
          Length = 150503

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  atgattattggttctttaag 592
            ||||||||||||||||||||
Sbjct: 2772 atgattattggttctttaag 2791
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 573     atgattattggttctttaag 592
               ||||||||||||||||||||
Sbjct: 2285912 atgattattggttctttaag 2285931
to top
>gb|AC020579.5|AC020579 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete
             sequence
          Length = 50821

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   taatgaagctgctaacaaca 161
             ||||||||||||||||||||
Sbjct: 39441 taatgaagctgctaacaaca 39460
to top
>gb|AC009021.8| Homo sapiens chromosome 16 clone RP11-105C19, complete sequence
          Length = 176219

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     aaaatagaacagaagaccaa 68
              ||||||||||||||||||||
Sbjct: 107905 aaaatagaacagaagaccaa 107886
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 282     cctgctcaggatgagcgacg 301
               ||||||||||||||||||||
Sbjct: 2695320 cctgctcaggatgagcgacg 2695339
to top
>gb|AC113178.10| Mus musculus chromosome 15, clone RP23-395K11, complete sequence
          Length = 198803

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   tcttgccgagtttctcggat 566
             ||||||||||||||||||||
Sbjct: 78741 tcttgccgagtttctcggat 78722
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 399     ttaatttccgagaactttgc 418
               ||||||||||||||||||||
Sbjct: 1950947 ttaatttccgagaactttgc 1950966
to top
>gb|AC147989.4| Mus musculus BAC clone RP24-468I14 from 18, complete sequence
          Length = 204168

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   aaaaccacataaataatgaagctg 152
             ||||||| ||||||||||||||||
Sbjct: 54351 aaaaccaaataaataatgaagctg 54328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,490,265
Number of Sequences: 3902068
Number of extensions: 5490265
Number of successful extensions: 94627
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94436
Number of HSP's gapped (non-prelim): 187
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top