| Clone Name | rbags39o10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, promoter region and complete cds Length = 3958 Score = 178 bits (90), Expect = 1e-41 Identities = 126/138 (91%) Strand = Plus / Minus Query: 280 agtgcatcacacggagagcgtcagaaaatggcgctgtccatggggaattcgtcgaagctc 339 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3586 agtgcatcacacggaaagcgtcagaaaatggcgctgtccatggggaactcgtcgaagctc 3527 Query: 340 cagaggctgacgccgtcgatgccgctgtccacaccgcgggcatcctggagggcagcgtct 399 |||||||||||| |||| ||||| |||||||| | | |||||||| ||| | |||||||| Sbjct: 3526 cagaggctgacggcgtccatgccactgtccacgctgagggcatccgggatgacagcgtct 3467 Query: 400 ccggcgaagaggctgtcg 417 |||||||||| ||||||| Sbjct: 3466 ccggcgaagatgctgtcg 3449 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 171 tgacgaaca-gaaactcaaacagtagaatacatttc-catcagcattcatcaaggaagca 228 ||||||||| |||||||||||||||||||||||||| ||| || |||||| |||||||| Sbjct: 3781 tgacgaacaagaaactcaaacagtagaatacatttcgaatctgcgttcatcgaggaagca 3722 Query: 229 atcatgca 236 |||||||| Sbjct: 3721 atcatgca 3714 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 105 cagtaccaaagactagaaaaaatcatgacagggtacaatacagtt 149 |||||||||||||||| | | |||||||||| ||||||||||||| Sbjct: 3896 cagtaccaaagactagtacagatcatgacagagtacaatacagtt 3852
>gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, complete cds Length = 1394 Score = 178 bits (90), Expect = 1e-41 Identities = 126/138 (91%) Strand = Plus / Minus Query: 280 agtgcatcacacggagagcgtcagaaaatggcgctgtccatggggaattcgtcgaagctc 339 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1022 agtgcatcacacggaaagcgtcagaaaatggcgctgtccatggggaactcgtcgaagctc 963 Query: 340 cagaggctgacgccgtcgatgccgctgtccacaccgcgggcatcctggagggcagcgtct 399 |||||||||||| |||| ||||| |||||||| | | |||||||| ||| | |||||||| Sbjct: 962 cagaggctgacggcgtccatgccactgtccacgctgagggcatccgggatgacagcgtct 903 Query: 400 ccggcgaagaggctgtcg 417 |||||||||| ||||||| Sbjct: 902 ccggcgaagatgctgtcg 885 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 171 tgacgaaca-gaaactcaaacagtagaatacatttc-catcagcattcatcaaggaagca 228 ||||||||| |||||||||||||||||||||||||| ||| || |||||| |||||||| Sbjct: 1217 tgacgaacaagaaactcaaacagtagaatacatttcgaatctgcgttcatcgaggaagca 1158 Query: 229 atcatgca 236 |||||||| Sbjct: 1157 atcatgca 1150 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 105 cagtaccaaagactagaaaaaatcatgacagggtacaatacagtt 149 |||||||||||||||| | | |||||||||| ||||||||||||| Sbjct: 1332 cagtaccaaagactagtacagatcatgacagagtacaatacagtt 1288
>ref|XM_470558.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1005 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 1005 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 951 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 913 cggcgaagaggctgtcgatgg 893
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 4330996 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 4331050 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 4331088 cggcgaagaggctgtcgatgg 4331108
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 95501 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 95447 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 95409 cggcgaagaggctgtcgatgg 95389
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 4331111 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 4331165 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 4331203 cggcgaagaggctgtcgatgg 4331223
>dbj|AK101949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075D23, full insert sequence Length = 1575 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 1098 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 1044 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 1006 cggcgaagaggctgtcgatgg 986
>dbj|AK060929.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A09, full insert sequence Length = 1195 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 724 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 670 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 632 cggcgaagaggctgtcgatgg 612
>dbj|AK060527.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F02, full insert sequence Length = 1249 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 300 tcagaaaatggcgctgtccatggggaattcgtcgaagctccagaggctgacgccg 354 |||||||| ||||| ||| || ||||| |||||||||||||| ||| |||||||| Sbjct: 1099 tcagaaaagggcgccgtcgattgggaagtcgtcgaagctccacaggttgacgccg 1045 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 cggcgaagaggctgtcgatgg 421 ||||||||||||||||||||| Sbjct: 1007 cggcgaagaggctgtcgatgg 987
>gb|AY106588.1| Zea mays PCO116881 mRNA sequence Length = 655 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 321 ggggaattcgtcgaagctccagaggctgacgccgtcgatgccg 363 |||||| |||||||||||||| |||| ||||||||| |||||| Sbjct: 314 ggggaactcgtcgaagctccacaggcggacgccgtccatgccg 272
>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence Length = 211071 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 cagtaccaaagactagaaaaaa 126 |||||||||||||||||||||| Sbjct: 68142 cagtaccaaagactagaaaaaa 68163
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 345 gctgacgccgtcgatgccgctg 366 |||||||||||||||||||||| Sbjct: 3084338 gctgacgccgtcgatgccgctg 3084359
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 aggctgacgccgtcgatgccgc 364 |||||||||||||||||||||| Sbjct: 7418832 aggctgacgccgtcgatgccgc 7418811
>gb|AC155946.7| Mus musculus 6 BAC RP24-483K3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 178502 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 aaaaatcatgacagggtacaa 142 ||||||||||||||||||||| Sbjct: 174960 aaaaatcatgacagggtacaa 174940
>emb|AL954222.1| Pan troglodytes chromosome 22 clone q21.2, complete sequence Length = 208827 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 gaaactcaaacagtagaatac 200 ||||||||||||||||||||| Sbjct: 103044 gaaactcaaacagtagaatac 103024
>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 Length = 340000 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 gaaactcaaacagtagaatac 200 ||||||||||||||||||||| Sbjct: 107563 gaaactcaaacagtagaatac 107543
>emb|AL603844.7| Human DNA sequence from clone RP11-541I21 on chromosome 1, complete sequence Length = 220185 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tctgacgaacagaaactcaaa 189 ||||||||||||||||||||| Sbjct: 2141 tctgacgaacagaaactcaaa 2121
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 gtctccggcgaagaggctgtcgatg 420 |||||||||| |||||||||||||| Sbjct: 278653 gtctccggcgcagaggctgtcgatg 278677
>gb|AC158651.12| Mus musculus BAC RP24-68I7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 190089 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 aaaaatcatgacagggtacaa 142 ||||||||||||||||||||| Sbjct: 75882 aaaaatcatgacagggtacaa 75862
>dbj|AP001044.2| Homo sapiens genomic DNA, chromosome 21, PCR fragment KUPCR2, ERG-ETS2 region, complete sequence Length = 12423 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 gaaactcaaacagtagaatac 200 ||||||||||||||||||||| Sbjct: 11990 gaaactcaaacagtagaatac 11970
>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence Length = 158788 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 agaatacatttccatcagca 213 |||||||||||||||||||| Sbjct: 13758 agaatacatttccatcagca 13777
>emb|BX537295.7| Zebrafish DNA sequence from clone DKEY-21O10 in linkage group 1, complete sequence Length = 165366 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 acatgatcaacagtaccaaa 114 |||||||||||||||||||| Sbjct: 147658 acatgatcaacagtaccaaa 147677
>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence Length = 130895 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 aaacagtagaatacatttcc 206 |||||||||||||||||||| Sbjct: 66343 aaacagtagaatacatttcc 66324
>gb|AC102643.9| Mus musculus chromosome 8, clone RP23-304B22, complete sequence Length = 210037 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 agcattcatcaaggaagcaa 229 |||||||||||||||||||| Sbjct: 192373 agcattcatcaaggaagcaa 192392
>gb|AC115989.6| Homo sapiens chromosome 17, clone CTD-2104P17, complete sequence Length = 40710 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 caaggaagcaatcatgcagt 238 |||||||||||||||||||| Sbjct: 25244 caaggaagcaatcatgcagt 25263
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agaatacatttccatcagca 213 |||||||||||||||||||| Sbjct: 45054 agaatacatttccatcagca 45035
>emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 in linkage group 18, complete sequence Length = 142119 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 accgcgggcatcctggaggg 391 |||||||||||||||||||| Sbjct: 76788 accgcgggcatcctggaggg 76807
>gb|AC112198.2| Homo sapiens chromosome 5 clone RP11-45H22, complete sequence Length = 194079 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gtagaatacatttccatcag 211 |||||||||||||||||||| Sbjct: 167991 gtagaatacatttccatcag 168010
>emb|BX248500.13| Zebrafish DNA sequence from clone DKEY-47A21, complete sequence Length = 230877 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 acatgatcaacagtaccaaa 114 |||||||||||||||||||| Sbjct: 40011 acatgatcaacagtaccaaa 39992
>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18, complete sequence Length = 212425 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 accgcgggcatcctggaggg 391 |||||||||||||||||||| Sbjct: 27960 accgcgggcatcctggaggg 27941 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,153,580 Number of Sequences: 3902068 Number of extensions: 3153580 Number of successful extensions: 60575 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60380 Number of HSP's gapped (non-prelim): 193 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)