ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2i09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTPA1_CRYNE (Q5K9U4) Serine/threonine-protein phosphatase 2A act... 29 8.9

>PTPA1_CRYNE (Q5K9U4) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 362

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 123 LTIFNLICSYN*PSPI*TEMSWLSNLLSDHQGLMHMNLNTERGEKLEVNYIGMNLW 290
           LT+F    S++  SP+   +S + N +  H GL  M L    G+++ V  I +  W
Sbjct: 276 LTLFKFGASFSEHSPLLYSLSQMPNWVKPHGGLKKMFLGEVVGKRVVVQGIWVGGW 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,320,193
Number of Sequences: 219361
Number of extensions: 1533949
Number of successful extensions: 3188
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3188
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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