| Clone Name | rbaal2i09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098A10, full insert sequence Length = 2697 Score = 123 bits (62), Expect = 7e-25 Identities = 131/154 (85%) Strand = Plus / Minus Query: 437 ccaacctttctttgttttttgctggttatggtgttgcgtgtcattgccaggaaatcgtcc 496 ||||| || ||||||||||||||||||||||||| || ||||| ||| ||| || | | Sbjct: 2248 ccaactttcctttgttttttgctggttatggtgtctcgagtcatatccaagaagtccttc 2189 Query: 497 catgtgtacttaaccagttcgtttttctcttcctcagaaagttcaaaattgggctctctt 556 || ||||| || ||||| || ||||||||||||||||||||||| || ||||| ||| Sbjct: 2188 caggtgtaattctgtagttctttcttctcttcctcagaaagttcaaagtttggctccctt 2129 Query: 557 ccacacataaaagcagccctatcatatagccggg 590 ||||||||||||||||||||||||||||| |||| Sbjct: 2128 ccacacataaaagcagccctatcatatagtcggg 2095 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 348 catctccatcatctgagttcgaagacccgccaccattgaccatctcagtatc 399 |||||||||| || |||| ||| || ||||||||||||| |||||||||||| Sbjct: 2349 catctccatcttccgagtgcgatgagccgccaccattgatcatctcagtatc 2298 Score = 50.1 bits (25), Expect = 0.008 Identities = 44/49 (89%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 200 tttatcagaccaccagggcc-ttatgcacatgaatttaaatactgagag 247 |||||||||||| ||||||| ||||||||||||| |||| || |||||| Sbjct: 2510 tttatcagaccatcagggcccttatgcacatgaaattaattattgagag 2462
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 512 agttcgtttttctcttcctcagaaagttcaaaattgggctctcttccacacataaaagca 571 ||||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct: 17681352 agttctttcttctcttcctcagaaagttcaaagtttggctcccttccacacataaaagca 17681293 Query: 572 gccct 576 ||||| Sbjct: 17681292 gccct 17681288 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 348 catctccatcatctgagttcgaagacccgccaccattgaccatctcagtatc 399 |||||||||| || |||| ||| || ||||||||||||| |||||||||||| Sbjct: 17681657 catctccatcttccgagtgcgatgagccgccaccattgatcatctcagtatc 17681606 Score = 50.1 bits (25), Expect = 0.008 Identities = 44/49 (89%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 200 tttatcagaccaccagggcc-ttatgcacatgaatttaaatactgagag 247 |||||||||||| ||||||| ||||||||||||| |||| || |||||| Sbjct: 17681818 tttatcagaccatcagggcccttatgcacatgaaattaattattgagag 17681770
>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0021C10 Length = 119527 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 512 agttcgtttttctcttcctcagaaagttcaaaattgggctctcttccacacataaaagca 571 ||||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct: 37366 agttctttcttctcttcctcagaaagttcaaagtttggctcccttccacacataaaagca 37307 Query: 572 gccct 576 ||||| Sbjct: 37306 gccct 37302 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 348 catctccatcatctgagttcgaagacccgccaccattgaccatctcagtatc 399 |||||||||| || |||| ||| || ||||||||||||| |||||||||||| Sbjct: 37671 catctccatcttccgagtgcgatgagccgccaccattgatcatctcagtatc 37620 Score = 50.1 bits (25), Expect = 0.008 Identities = 44/49 (89%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 200 tttatcagaccaccagggcc-ttatgcacatgaatttaaatactgagag 247 |||||||||||| ||||||| ||||||||||||| |||| || |||||| Sbjct: 37832 tttatcagaccatcagggcccttatgcacatgaaattaattattgagag 37784
>ref|XM_808060.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508723.70) partial mRNA Length = 6603 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 aggaaatcgtcccatgtgtac 505 ||||||||||||||||||||| Sbjct: 458 aggaaatcgtcccatgtgtac 438
>gb|AC122385.2| Mus musculus BAC clone RP24-72B22 from chromosome 1, complete sequence Length = 178821 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 tttctttgttttttgctggtt 463 ||||||||||||||||||||| Sbjct: 134861 tttctttgttttttgctggtt 134881
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 ctttctttgttttttgctggt 462 ||||||||||||||||||||| Sbjct: 262598 ctttctttgttttttgctggt 262578
>gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosome 16, complete sequence Length = 202496 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctaaattcatttctataatt 124 ||||||||||||||||||||| Sbjct: 84834 gctaaattcatttctataatt 84814
>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence Length = 200581 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 taaattcatttctataattga 126 ||||||||||||||||||||| Sbjct: 23324 taaattcatttctataattga 23304
>gb|AC134845.5| Mus musculus BAC clone RP24-424K5 from chromosome 1, complete sequence Length = 194449 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 tttctttgttttttgctggtt 463 ||||||||||||||||||||| Sbjct: 392 tttctttgttttttgctggtt 412
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 ccatctccaatttgaactgag 179 ||||||||||||||||||||| Sbjct: 2546080 ccatctccaatttgaactgag 2546100
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 aaaatattctataggtaaaacttgt 27 |||||||| |||||||||||||||| Sbjct: 10720517 aaaatattttataggtaaaacttgt 10720493
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 aaaatattctataggtaaaacttgt 27 |||||||| |||||||||||||||| Sbjct: 43331 aaaatattttataggtaaaacttgt 43307
>gb|AC109459.3| Homo sapiens chromosome 5 clone RP11-260E4, complete sequence Length = 137309 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 taaattcatttctataattga 126 ||||||||||||||||||||| Sbjct: 85795 taaattcatttctataattga 85775
>dbj|AP005526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0571B09 Length = 147382 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 ccatctccaatttgaactgag 179 ||||||||||||||||||||| Sbjct: 60437 ccatctccaatttgaactgag 60457
>dbj|AP005506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665F09 Length = 147102 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 ccatctccaatttgaactgag 179 ||||||||||||||||||||| Sbjct: 107709 ccatctccaatttgaactgag 107729
>gb|AC004960.1|AC004960 Homo sapiens PAC clone RP5-1098B1 from 7q11.23-q21, complete sequence Length = 143834 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tgtaaacctataaacagatat 69 ||||||||||||||||||||| Sbjct: 138126 tgtaaacctataaacagatat 138146
>emb|CR812484.8| Zebrafish DNA sequence from clone DKEY-83B16 in linkage group 18, complete sequence Length = 149153 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctggaatcgtttcaaatgatt 98 ||||||||||||||||||||| Sbjct: 129113 ctggaatcgtttcaaatgatt 129133
>dbj|AP006648.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT29O08, TM0320a, complete sequence Length = 76227 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 448 ttgttttttgctggttatggtgttg 472 |||||||||| |||||||||||||| Sbjct: 16166 ttgttttttgttggttatggtgttg 16142
>ref|NM_117373.3| Arabidopsis thaliana DNA binding / transcription factor AT4G13040 mRNA, complete cds Length = 861 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 557 ccacacataaaagcagccctatcatata 584 |||||||| |||||||||||||| |||| Sbjct: 625 ccacacatgaaagcagccctatcgtata 598
>gb|AC124993.19| Mus musculus chromosome 15, clone RP23-150J21, complete sequence Length = 214304 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tatgcacatgaatttaaata 240 |||||||||||||||||||| Sbjct: 59934 tatgcacatgaatttaaata 59953
>gb|AY601813.1| Plutella xylostella insecticidal Bt toxin receptor APN2 mRNA, complete cds Length = 2975 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccaccattgaccatctcagt 396 |||||||||||||||||||| Sbjct: 2273 ccaccattgaccatctcagt 2254
>ref|NM_001030055.1| Homo sapiens Rho GTPase activating protein 5 (ARHGAP5), transcript variant 1, mRNA Length = 9604 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 5790 cttcaatttaatttgttcct 5809
>ref|NM_001173.2| Homo sapiens Rho GTPase activating protein 5 (ARHGAP5), transcript variant 2, mRNA Length = 9601 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 5787 cttcaatttaatttgttcct 5806
>gb|AY573579.1| Plutella xylostella aminopeptidase N2 mRNA, complete cds Length = 2965 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccaccattgaccatctcagt 396 |||||||||||||||||||| Sbjct: 2273 ccaccattgaccatctcagt 2254
>gb|AY564236.1| Plutella xylostella aminopeptidase N2 mRNA, complete cds Length = 2956 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccaccattgaccatctcagt 396 |||||||||||||||||||| Sbjct: 2273 ccaccattgaccatctcagt 2254
>gb|AC133504.2| Mus musculus BAC clone RP24-174N6 from chromosome 15, complete sequence Length = 145186 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tatgcacatgaatttaaata 240 |||||||||||||||||||| Sbjct: 126416 tatgcacatgaatttaaata 126435
>emb|AL110484.2|CEY38E10A Caenorhabditis elegans YAC Y38E10A, complete sequence Length = 110933 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ggtaaaacttgtgttaaact 35 |||||||||||||||||||| Sbjct: 46712 ggtaaaacttgtgttaaact 46693
>gb|AY462277.1| Neisseria mucosa subsp. heidelbergiensis NheI restriction-modification system, complete sequence Length = 3009 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 aattcatttctataattgac 127 |||||||||||||||||||| Sbjct: 497 aattcatttctataattgac 478
>gb|AC006971.2| Homo sapiens PAC clone RP4-791C19 from 7, complete sequence Length = 115861 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 44915 cttcaatttaatttgttcct 44934
>gb|AC165165.3| Mus musculus BAC clone RP23-121B15 from chromosome 3, complete sequence Length = 228648 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gaggggggaaaaactagagg 264 |||||||||||||||||||| Sbjct: 115142 gaggggggaaaaactagagg 115123
>emb|AL590005.6| Human DNA sequence from clone RP11-513F12 on chromosome 6 Contains part of the BPAG1 gene for bullous pemphigoid antigen 1 (230/240kD), complete sequence Length = 101658 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 catgaatttaaatactgaga 246 |||||||||||||||||||| Sbjct: 27644 catgaatttaaatactgaga 27663
>emb|AL359771.27| Human DNA sequence from clone CTA-520D8 on chromosome 1 Contains the 3' end of the gene for lung type-I cell membrane-associated glycoprotein (T1A-2), a novel gene, the 5' end of the PRDM2 gene for PR domain containing 2 with ZNF domain and a CpG island, complete sequence Length = 111182 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 104513 cttcaatttaatttgttcct 104494
>gb|AY133690.1| Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds Length = 622 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 557 ccacacataaaagcagccctatcatata 584 |||||||| |||||||||||||| |||| Sbjct: 392 ccacacatgaaagcagccctatcgtata 365
>gb|BC075799.1| Homo sapiens Rho GTPase activating protein 5, mRNA (cDNA clone IMAGE:5286523), complete cds Length = 2850 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 1972 cttcaatttaatttgttcct 1991
>emb|BX538219.1|HSM806451 Homo sapiens genomic DNA; cDNA DKFZp686C20130 (from clone DKFZp686C20130) Length = 4385 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 1564 cttcaatttaatttgttcct 1545
>emb|CR596496.1| full-length cDNA clone CS0DC005YF13 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 3013 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 1760 cttcaatttaatttgttcct 1779
>dbj|AK023468.1| Homo sapiens cDNA FLJ13406 fis, clone PLACE1001634 Length = 2026 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 890 cttcaatttaatttgttcct 909
>dbj|AK023014.1| Homo sapiens cDNA FLJ12952 fis, clone NT2RP2005476, highly similar to Human p190-B (p190-B) mRNA Length = 3207 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 1905 cttcaatttaatttgttcct 1924
>gb|AC024918.5| Homo sapiens chromosome 17, clone RP11-254J21, complete sequence Length = 172784 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tttctcttcctcagaaagtt 539 |||||||||||||||||||| Sbjct: 73864 tttctcttcctcagaaagtt 73883
>dbj|AK221624.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09 Length = 839 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 557 ccacacataaaagcagccctatcatata 584 |||||||| |||||||||||||| |||| Sbjct: 553 ccacacatgaaagcagccctatcgtata 526
>dbj|AK035333.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530018I21 product:polydomain protein, full insert sequence Length = 3242 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 catctccatcatctgagttc 367 |||||||||||||||||||| Sbjct: 2229 catctccatcatctgagttc 2248
>gb|AC010350.5|AC010350 Homo sapiens chromosome 5 clone CTD-2020P22, complete sequence Length = 92725 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 71283 cttcaatttaatttgttcct 71264
>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human BAC Library) complete sequence Length = 160039 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tgggctctcttccacacata 565 |||||||||||||||||||| Sbjct: 3975 tgggctctcttccacacata 3956
>emb|BX828994.1|CNS0A2ML Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 862 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 557 ccacacataaaagcagccctatcatata 584 |||||||| |||||||||||||| |||| Sbjct: 625 ccacacatgaaagcagccctatcgtata 598
>emb|AL161665.5|CNS01RH9 Human chromosome 14 DNA sequence BAC R-431H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172993 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcaatttaatttgttcct 150 |||||||||||||||||||| Sbjct: 66576 cttcaatttaatttgttcct 66557
>emb|AL844849.13| Mouse DNA sequence from clone RP23-383L13 on chromosome 2, complete sequence Length = 155501 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aacagatatgcacagttctg 80 |||||||||||||||||||| Sbjct: 80799 aacagatatgcacagttctg 80780
>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087, complete sequence Length = 124300 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 catcttcaatttaatttgtt 147 |||||||||||||||||||| Sbjct: 47543 catcttcaatttaatttgtt 47562
>emb|AL928930.9| Mouse DNA sequence from clone RP23-386P7 on chromosome 2, complete sequence Length = 155721 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 atgttgatgtaaacctataaacag 65 ||||||||||||| |||||||||| Sbjct: 49391 atgttgatgtaaaactataaacag 49414
>gb|AC169805.2| Rhesus Macaque CHR14 BAC CH250-14P20 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 204789 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 aaattgggctctcttccaca 561 |||||||||||||||||||| Sbjct: 10981 aaattgggctctcttccaca 10962
>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete sequence Length = 252953 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 catctccatcatctgagttc 367 |||||||||||||||||||| Sbjct: 64877 catctccatcatctgagttc 64858
>emb|AJ222699.1|PXY222699 Plutella xylostella mRNA for aminopeptidase N Length = 2963 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccaccattgaccatctcagt 396 |||||||||||||||||||| Sbjct: 2276 ccaccattgaccatctcagt 2257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,609,598 Number of Sequences: 3902068 Number of extensions: 6609598 Number of successful extensions: 139703 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139448 Number of HSP's gapped (non-prelim): 252 length of query: 590 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 567 effective length of database: 17,143,297,704 effective search space: 9720249798168 effective search space used: 9720249798168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)