ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39n24 |
|---|---|
| Clone Library Name | barley_pub |
>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)| Length = 411 Score = 306 bits (784), Expect = 4e-83 Identities = 155/170 (91%), Positives = 166/170 (97%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVL 482 L+ FVPFSQ+SSK++AEELL+KE+PLKFVEVDEEQ RLV+SNRKAMADSQAQLGIGSVV Sbjct: 206 LRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVT 265 Query: 481 GTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVS 302 GTV+SLKPYGAFIDIGGINGLLHVSQISHDRV+DI+TVLQPGDTLKVMILSHDRERGRVS Sbjct: 266 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVS 325 Query: 301 LSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRFQ 152 LSTKKLEPTPGDMIRNPKLVFEKA+EMAQ FRQRIAQAEAMARADMLRFQ Sbjct: 326 LSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQ 375
>RS1_SYNP6 (P46228) 30S ribosomal protein S1| Length = 306 Score = 182 bits (461), Expect = 1e-45 Identities = 85/158 (53%), Positives = 124/158 (78%), Gaps = 1/158 (0%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVV 485 L+ F+P S +S++ E+L+ +ELPLKF+EVDE++ RLVLS+R+A+ + + +L +G VV Sbjct: 140 LRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVV 199 Query: 484 LGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRV 305 +G V +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+ Sbjct: 200 VGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRI 259 Query: 304 SLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 191 SLSTK+LEP PGDM+RNP++V+EKA+EMA +R+++ Q Sbjct: 260 SLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 297 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGGING-LLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G V+GTV +L+P GA IDIG L V ++S +RV VLQP + + ILS + Sbjct: 31 GDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDEN 90 Query: 319 ERGRVSLSTKKLE 281 E G+++LS +++E Sbjct: 91 EDGQLTLSIRRIE 103
>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A| Length = 328 Score = 173 bits (438), Expect = 5e-43 Identities = 86/163 (52%), Positives = 124/163 (76%), Gaps = 2/163 (1%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ-LGIGSVV 485 L+ F+P S +S++ E+L+ ++LPLKF+EVDEE+ RLVLS+R+A+ + + L + VV Sbjct: 140 LRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVV 199 Query: 484 LGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRV 305 +G+V +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+ Sbjct: 200 VGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRI 259 Query: 304 SLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQ-RIAQAEAM 179 SLSTK+LEP PG M+++ LV E ADEMA+IFRQ R+A+A+ + Sbjct: 260 SLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G +V GTV S++ GA IDIG + + ++S +RV D VLQP +T + IL+ + Sbjct: 31 GDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEVLQPNETREFFILTDEN 90 Query: 319 ERGRVSLSTKKLE 281 E G+++LS +++E Sbjct: 91 EDGQLTLSIRRIE 103
>RS1_SYNP7 (O33698) 30S ribosomal protein S1| Length = 295 Score = 108 bits (269), Expect = 2e-23 Identities = 55/156 (35%), Positives = 96/156 (61%), Gaps = 1/156 (0%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVV 485 L+AF+P S ++ K + L K L + F+EV+ +LVLS R+A + ++ +G ++ Sbjct: 137 LRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLI 196 Query: 484 LGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRV 305 G V LKP+G F+D+GG LL ++QIS VAD+ + + GD ++ ++++ D +GR+ Sbjct: 197 NGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRI 256 Query: 304 SLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRI 197 SLSTK LE PG+++ N + A + A+ R+++ Sbjct: 257 SLSTKVLENHPGEILENVAELQASAADRAERARKQL 292 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G +V G V GA+IDIGG L + + V D+ L + L+ +++ Sbjct: 28 GQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDLEAHLPKDEELEFLVIRDQN 87 Query: 319 ERGRVSLSTKKL 284 E G+V++S + L Sbjct: 88 EDGQVTVSLRAL 99
>RS1_LEULA (P50889) 40S ribosomal protein S1| Length = 429 Score = 105 bits (261), Expect = 2e-22 Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 11/159 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ-------- 512 ++ FVP S V+ + ++ + +K++ + +E+D RL+LS RKA+A + Sbjct: 166 VRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS-RKAVAAQELAAQLAEV 224 Query: 511 -AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV + + VL GD + V I Sbjct: 225 FSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKI 284 Query: 334 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMA 218 L+ D E+GR+SLS K + P D E AD++A Sbjct: 285 LALDTEKGRISLSIKATQRGPWD---------EAADQIA 314 Score = 78.2 bits (191), Expect = 2e-14 Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 5/113 (4%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLS----NRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GG 431 ++ +K + +D E+GR+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I G Sbjct: 279 KVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPG 338 Query: 430 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 I GL+HVSQIS+ R+ + S VL+ GD ++V +L R+SLS K LE P Sbjct: 339 IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
>RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog| Length = 382 Score = 98.2 bits (243), Expect = 2e-20 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 10/144 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ------ 506 ++ F+P S V + + + K L L VE+D ++ R++LS+R + QA Sbjct: 123 VRGFIPASLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELL 182 Query: 505 --LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L +GSV+ G V+ L +GAF+DIGGI+GL+H+SQ+SH V S V++ G +KV +L Sbjct: 183 QSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVL 242 Query: 331 SHDRERGRVSLSTKKLEPTPGDMI 260 S DR+ R+SLS K P P + I Sbjct: 243 SVDRDNERISLSIKDTLPGPWNQI 266 Score = 74.3 bits (181), Expect = 3e-13 Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 5/114 (4%) Frame = -1 Query: 598 KELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-G 434 +E+ +K + VD + R+ LS + + Q+G G V+ GTV+ L +GAF++I Sbjct: 235 QEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILP 294 Query: 433 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 G+ GL+H+SQIS+ + VL+ G T+KV +L + R+SLS ++LE TP Sbjct: 295 GVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B| Length = 305 Score = 97.8 bits (242), Expect = 2e-20 Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGSVV 485 L+ F+P S + K + L+ + L +E +++ +LVL+ R+ A+S ++ G++ Sbjct: 138 LRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIY 197 Query: 484 LGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRV 305 G V ++PYG F++I G+ GLLHVSQ+S RV ++T+ G + V + D + R+ Sbjct: 198 EGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRI 257 Query: 304 SLSTKKLEPTPGDMIRNPKLVFEKADEM 221 SLST+ LE PG+++ EK DEM Sbjct: 258 SLSTRILETYPGELV-------EKFDEM 278
>RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog| Length = 382 Score = 97.4 bits (241), Expect = 3e-20 Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 10/144 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMA---DSQAQLGI 497 ++ F+P S V + + K L +K VE+D E+ R++LS++ + DS+ + I Sbjct: 124 VRGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAI 183 Query: 496 -----GSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 G VV GTV+ L +GAF+++GG++GL+H+SQISH+RV S VL+ G +KV +L Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVL 243 Query: 331 SHDRERGRVSLSTKKLEPTPGDMI 260 S D + R+SLS K +P P + I Sbjct: 244 SVDADTQRISLSIKAAQPGPWENI 267 Score = 56.2 bits (134), Expect = 8e-08 Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 9/130 (6%) Frame = -1 Query: 649 VPFSQVSSKTTAE--ELLDK--ELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIG 494 V SQ+S + + E+L++ ++ +K + VD + R+ LS + A + ++ G Sbjct: 215 VHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAG 274 Query: 493 SVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRE 317 + G V+ L +GAF++I G+ GL+HVSQI++ V + + VL+ G +KV +L Sbjct: 275 DIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVA 334 Query: 316 RGRVSLSTKK 287 R+SLS K+ Sbjct: 335 EKRISLSIKE 344
>RS1_HAEIN (Q48082) 30S ribosomal protein S1| Length = 549 Score = 92.0 bits (227), Expect = 1e-18 Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTT--AEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ------ 506 ++AF+P S V ++ A+ LL KEL K +++D+++ +V+S R + +Q Sbjct: 127 VRAFLPGSLVDTRPAREADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVL 186 Query: 505 --LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L GS V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V +L Sbjct: 187 ENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVL 246 Query: 331 SHDRERGRVSLSTKKLEPTP 272 D++R RVSL K+L P Sbjct: 247 KFDKDRTRVSLGLKQLGQDP 266 Score = 60.1 bits (144), Expect = 6e-09 Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI-GG 431 E+ +K ++ D+++ R+ L ++ D A + + S + G V +L YG F++I G Sbjct: 240 EVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ GDT++VM+L D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANP 353 Score = 55.5 bits (132), Expect = 1e-07 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 7/109 (6%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +E+DEE+ R+ L ++ A+ Q G V G ++S+ +G FI + GGI+GL+H Sbjct: 333 LEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGGIDGLVH 392 Query: 412 VSQISHDRVADISTVLQ--PGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS ++ V Q GD + ++L+ D + R+SL K+LE P Sbjct: 393 LSDISWS-ISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEEDP 440 Score = 30.4 bits (67), Expect = 4.9 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Frame = -1 Query: 637 QVSSKTTAEELLDKELPLKFVEVDEEQ-GRLVLSNRKAMADSQAQLGIGSVVLGTVESLK 461 +VS+ A + + + + L +++E+ V N+K G+VV TV Sbjct: 414 EVSAVVLAVDAVKERISLGIKQLEEDPFNNFVAINKK-----------GAVVSATVVEAD 462 Query: 460 PYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 290 GA +++ GG+ G + R AD+++ + GD ++ DR+ V LS K Sbjct: 463 AKGAKVELAGGVEGYI--------RSADLTSEVAVGDVVEAKYTGVDRKSRIVHLSVK 512
>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1| Length = 263 Score = 89.7 bits (221), Expect = 7e-18 Identities = 44/128 (34%), Positives = 82/128 (64%), Gaps = 1/128 (0%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGSVV 485 + FVP S +++ + +K + LK + V+E+ L+LS+R+A+ A + + L +G+++ Sbjct: 136 ISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNII 195 Query: 484 LGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRV 305 G + + PYG FI G + GL+H+S+I+ +V I + + GDT+K +I+ D+++GR+ Sbjct: 196 EGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRL 255 Query: 304 SLSTKKLE 281 SLS K L+ Sbjct: 256 SLSMKHLK 263 Score = 38.1 bits (87), Expect = 0.023 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = -1 Query: 505 LGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILS 329 L +G +V GT+ S + G +DIG ++ L + ++S ++ + L DT + +L Sbjct: 24 LNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELNNFNSLNINDTREFFLLD 83 Query: 328 HDRERGRVSLSTKKLE 281 ++ E ++ LS ++LE Sbjct: 84 YNVESRQLILSIRRLE 99
>RS1_RHIME (P14129) 30S ribosomal protein S1| Length = 568 Score = 89.0 bits (219), Expect = 1e-17 Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 10/142 (7%) Frame = -1 Query: 655 AFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ-------- 506 AF+P SQV + + L+ P + +++D+ +G +V+S R + +S+A+ Sbjct: 135 AFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQN 194 Query: 505 LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 L G VV G V+++ YGAF+D+GGI+GLLHV+ ++ RV S +L G +KV I+ Sbjct: 195 LEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRI 254 Query: 325 DRERGRVSLSTKKLEPTPGDMI 260 ++E R+SL K+LE P D I Sbjct: 255 NQETHRISLGMKQLESDPWDGI 276 Score = 50.8 bits (120), Expect = 3e-06 Identities = 29/117 (24%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI 437 + +++ ++ + +++E R+ L ++ +D +G +G + GTV ++ YGAF+++ Sbjct: 243 IGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVEL 302 Query: 436 -GGINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 GI GL+H+S++S + +L + V++L D + R+SL K+ P Sbjct: 303 EPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENP 359 Score = 42.7 bits (99), Expect = 0.001 Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Frame = -1 Query: 598 KELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDIGG 431 +E+ + +EVD + R+ L ++ + + G+ V G V++ +G FI + G Sbjct: 332 QEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTEVEGEVKNKTEFGLFIGLDG 391 Query: 430 -INGLLHVSQISHDRVAD-ISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 284 ++G++H+S + +R + + GD ++ ++L D ++ R+SL K+L Sbjct: 392 DVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQL 442
>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1| Length = 566 Score = 88.2 bits (217), Expect = 2e-17 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 11/141 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ------ 506 ++AF+P S V + E L KEL K +++D+++ +V+S R+A+ +S+ Sbjct: 127 IRAFLPGSLVDIRPVRETMHLEGKELEFKVIKLDQKRNNVVVS-RRAVIESEYNAERNLL 185 Query: 505 ---LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 L G +V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD +K+ I Sbjct: 186 LETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKI 245 Query: 334 LSHDRERGRVSLSTKKLEPTP 272 L DRE+ RVSL K+L P Sbjct: 246 LKFDREKIRVSLGLKQLSDDP 266 Score = 52.8 bits (125), Expect = 9e-07 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIG----SVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D ++ + + G V +L YG F++I G Sbjct: 240 EVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEEG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S ++Q +KVMIL D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNP 353
>RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)| Length = 378 Score = 86.3 bits (212), Expect = 8e-17 Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQ----- 506 ++AF+P S V + + L KEL K +++D+++ +V+S R + ++S A+ Sbjct: 22 IRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLL 81 Query: 505 --LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V +L Sbjct: 82 ENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 141 Query: 331 SHDRERGRVSLSTKKLEPTP 272 DRER RVSL K+L P Sbjct: 142 KFDRERTRVSLGLKQLGEDP 161 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D + G+ + G V +L YG F++I G Sbjct: 135 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 194 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ GD ++VM+L D ER R+SL K+ + P Sbjct: 195 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 248 Score = 53.9 bits (128), Expect = 4e-07 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ ++ Q G V G ++S+ +G FI + GGI+GL+H Sbjct: 228 LDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVH 287 Query: 412 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS + + + + GD + ++L D ER R+SL K+L P Sbjct: 288 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 335
>RS1_RICPR (Q9ZD28) 30S ribosomal protein S1| Length = 568 Score = 85.9 bits (211), Expect = 1e-16 Identities = 48/143 (33%), Positives = 85/143 (59%), Gaps = 10/143 (6%) Frame = -1 Query: 655 AFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ-------- 506 AF+P SQV + + +++ + P K + +D++ G +V+S R + +S+++ Sbjct: 142 AFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSK 201 Query: 505 LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 + G V+ G V+++ YGAFID+G ++GLLH++ IS RV S VL+ +KVM++ Sbjct: 202 IKEGIVLEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKF 261 Query: 325 DRERGRVSLSTKKLEPTPGDMIR 257 D + R+SL K+L+ P D I+ Sbjct: 262 DEKTKRISLGIKQLDSNPWDAIK 284 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI 437 + +E+ +EVD E+ R+ LS ++ + + IG+++ + ++ +G F+ + Sbjct: 337 IGQEVEFIVLEVDTEKHRVSLSIKQCQENPLIKFAENNPIGTIIKAPIRNITDFGIFVVL 396 Query: 436 GG-INGLLHVSQIS-HDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 G ++G++H IS D D+ + GD ++ +L+ + E+ +VSL K+L P P Sbjct: 397 GNNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNP 453 Score = 34.7 bits (78), Expect = 0.26 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Frame = -1 Query: 580 FVE-VDEEQGRLVLSNRKAMADSQ-AQLGI----GSVVLGTVESLKPYGAFIDIGGINGL 419 F+E ++ GR +LS KA+ + QL I G V GT+ G +D+ G+ Sbjct: 84 FIEKIEGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAF 143 Query: 418 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 290 L SQ+ + D ++++ K ILS D++ G + +S + Sbjct: 144 LPGSQVDVRPIKDPTSIMNIKQPFK--ILSMDKKLGNIVVSRR 184
>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1| Length = 393 Score = 85.5 bits (210), Expect = 1e-16 Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAEELLDKE---LPLKFVEVDEEQGRLVLSNRKAMADSQAQ------ 506 + FVP S +S+ E+ D E L LK E+D R++LS + A A+ Sbjct: 130 RGFVPASLISTDFI-EDFSDFEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELL 188 Query: 505 --LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAF+DIGG++GL+HVS++SH+ V V+ G+T+ V I Sbjct: 189 ESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S D++ R+SLS K P+P + I+ Sbjct: 249 SVDKDSERISLSIKDTLPSPFESIK 273 Score = 67.4 bits (163), Expect = 4e-11 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Frame = -1 Query: 586 LKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDIG-GING 422 +K VD++ R+ LS + + + + G V+ GTV L +GAF++I G+ G Sbjct: 245 VKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304 Query: 421 LLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 278 L+H+S+ISH + S L+PG + V +L D E R+SLS K P Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLP 352 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + + G NG++ +SQ+S + + S ++ GD + + Sbjct: 16 GDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 YDEENETGAYILSKRQLE 93
>RS1_BUCAI (P57395) 30S ribosomal protein S1| Length = 558 Score = 85.5 bits (210), Expect = 1e-16 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 ++AF+P S V + + L KEL K +++D+++ +V+S R + + Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + + IL Sbjct: 187 ENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKIL 246 Query: 331 SHDRERGRVSLSTKKLEPTP 272 DRER RVSL K+L P Sbjct: 247 KFDRERTRVSLGLKQLGEDP 266 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ + + G VLG ++S+ +G FI + GGI+GL+H Sbjct: 333 LDIDEERRRISLGLKQCKINPWKEFSETHKKGVHVLGKIKSITDFGIFIGLNGGIDGLVH 392 Query: 412 VSQISHDRVADISTV-LQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS + + V + D + ++L D ER R+SL K+LE P Sbjct: 393 LSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERISLGIKQLEEDP 440 Score = 49.7 bits (117), Expect = 8e-06 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIG----SVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D + + + G V +L YG F++I G Sbjct: 240 EINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ D ++VM+L D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKINP 353
>RS1_BUCAP (Q44653) 30S ribosomal protein S1| Length = 559 Score = 85.5 bits (210), Expect = 1e-16 Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 10/146 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 ++AF+P S V + + L KEL K +++D+++ +V+S R + + Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G + G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V IL Sbjct: 187 ESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKIL 246 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIRN 254 D+ER RVSL K+L P I N Sbjct: 247 KFDKERTRVSLGLKQLGEDPWIAISN 272 Score = 52.8 bits (125), Expect = 9e-07 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 7/109 (6%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ + + G V G ++S+ +G FI + GGI+GL+H Sbjct: 333 LDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIFIGLKGGIDGLVH 392 Query: 412 VSQISHDRVADISTV--LQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS +++ V + GD + ++L D ER R+SL K+LE P Sbjct: 393 LSDISW-KISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEEDP 440 Score = 30.4 bits (67), Expect = 4.9 Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 15/167 (8%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 509 + V S +S K + EE + E+ ++VD E+ R+ L ++ D + Sbjct: 387 IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEEDPFNVYVS 446 Query: 508 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 G+++ G ++ + + G+ G + S S +I L+ DT+ V I Sbjct: 447 NHKKGAIITGIIKDFDKKTVTVKLSDGVEGNIKFSDSSRVNSEEIIKKLKIDDTILVKIS 506 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADE-----MAQIFR 206 + DR+ ++L+ L+ K+ + DE MA+ F+ Sbjct: 507 NFDRKNRIINLTFHILDENNNKKDLKNKINVKSNDESFSNVMAEAFK 553
>RS1_SHIFL (P0AG70) 30S ribosomal protein S1| Length = 557 Score = 85.5 bits (210), Expect = 1e-16 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 ++AF+P S V + + L KEL K +++D+++ +V+S R + + Sbjct: 127 IRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V +L Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246 Query: 331 SHDRERGRVSLSTKKLEPTP 272 DRER RVSL K+L P Sbjct: 247 KFDRERTRVSLGLKQLGEDP 266 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D + G+ + G V +L YG F++I G Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ GD ++VM+L D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ A+ Q G V G ++S+ +G FI + GGI+GL+H Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392 Query: 412 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS + + + + GD + ++L D ER R+SL K+L P Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 509 + V S +S EE + + E+ ++VD E+ R+ L ++ D A Sbjct: 387 IDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVA 446 Query: 508 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 G++V G V ++ GA +++ G+ G L S+ S DRV D + VL GD ++ Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 506 Query: 331 SHDRERGRVSLSTK 290 DR+ +SLS + Sbjct: 507 GVDRKNRAISLSVR 520
>RS1_ECOLI (P0AG67) 30S ribosomal protein S1| Length = 557 Score = 85.5 bits (210), Expect = 1e-16 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 ++AF+P S V + + L KEL K +++D+++ +V+S R + + Sbjct: 127 IRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V +L Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246 Query: 331 SHDRERGRVSLSTKKLEPTP 272 DRER RVSL K+L P Sbjct: 247 KFDRERTRVSLGLKQLGEDP 266 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D + G+ + G V +L YG F++I G Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ GD ++VM+L D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ A+ Q G V G ++S+ +G FI + GGI+GL+H Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392 Query: 412 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS + + + + GD + ++L D ER R+SL K+L P Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 509 + V S +S EE + + E+ ++VD E+ R+ L ++ D A Sbjct: 387 IDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVA 446 Query: 508 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 G++V G V ++ GA +++ G+ G L S+ S DRV D + VL GD ++ Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 506 Query: 331 SHDRERGRVSLSTK 290 DR+ +SLS + Sbjct: 507 GVDRKNRAISLSVR 520
>RS1_ECOL6 (P0AG68) 30S ribosomal protein S1| Length = 557 Score = 85.5 bits (210), Expect = 1e-16 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 ++AF+P S V + + L KEL K +++D+++ +V+S R + + Sbjct: 127 IRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V +L Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246 Query: 331 SHDRERGRVSLSTKKLEPTP 272 DRER RVSL K+L P Sbjct: 247 KFDRERTRVSLGLKQLGEDP 266 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D + G+ + G V +L YG F++I G Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ GD ++VM+L D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ A+ Q G V G ++S+ +G FI + GGI+GL+H Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392 Query: 412 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS + + + + GD + ++L D ER R+SL K+L P Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 509 + V S +S EE + + E+ ++VD E+ R+ L ++ D A Sbjct: 387 IDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVA 446 Query: 508 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 G++V G V ++ GA +++ G+ G L S+ S DRV D + VL GD ++ Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 506 Query: 331 SHDRERGRVSLSTK 290 DR+ +SLS + Sbjct: 507 GVDRKNRAISLSVR 520
>RS1_ECO57 (P0AG69) 30S ribosomal protein S1| Length = 557 Score = 85.5 bits (210), Expect = 1e-16 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 ++AF+P S V + + L KEL K +++D+++ +V+S R + + Sbjct: 127 IRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V G V++L YGAF+D+GG++GLLH++ ++ RV S ++ GD + V +L Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246 Query: 331 SHDRERGRVSLSTKKLEPTP 272 DRER RVSL K+L P Sbjct: 247 KFDRERTRVSLGLKQLGEDP 266 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 431 E+ +K ++ D E+ R+ L ++ D + G+ + G V +L YG F++I G Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299 Query: 430 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 + GL+HVS++ ++ S V+ GD ++VM+L D ER R+SL K+ + P Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 413 +++DEE+ R+ L ++ A+ Q G V G ++S+ +G FI + GGI+GL+H Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392 Query: 412 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 +S IS + + + + GD + ++L D ER R+SL K+L P Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 509 + V S +S EE + + E+ ++VD E+ R+ L ++ D A Sbjct: 387 IDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVA 446 Query: 508 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 G++V G V ++ GA +++ G+ G L S+ S DRV D + VL GD ++ Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 506 Query: 331 SHDRERGRVSLSTK 290 DR+ +SLS + Sbjct: 507 GVDRKNRAISLSVR 520
>RS1_STAAN (Q7A5J0) 30S ribosomal protein S1| Length = 391 Score = 85.1 bits (209), Expect = 2e-16 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ + Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I Sbjct: 189 QSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S DR+ R+SLS K PTP + I+ Sbjct: 249 SIDRDTERISLSIKDTLPTPFENIK 273 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ +++ +K +D + R+ LS + + + + Q V+ G V L Sbjct: 232 TPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVSLS K Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 FDEENETGAYILSRRQLE 93
>RS1_STAAM (Q99U14) 30S ribosomal protein S1| Length = 391 Score = 85.1 bits (209), Expect = 2e-16 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ + Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I Sbjct: 189 QSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S DR+ R+SLS K PTP + I+ Sbjct: 249 SIDRDTERISLSIKDTLPTPFENIK 273 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ +++ +K +D + R+ LS + + + + Q V+ G V L Sbjct: 232 TPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVSLS K Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 FDEENETGAYILSRRQLE 93
>RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)| Length = 565 Score = 84.7 bits (208), Expect = 2e-16 Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 10/138 (7%) Frame = -1 Query: 655 AFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ-------- 506 AF+P SQV + + L++ P + +++D +G +V+S R + +++A+ Sbjct: 138 AFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQN 197 Query: 505 LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 L G V+ G V+++ YGAF+D+GGI+GLLHV+ I+ RV + VL G T+KV I+ Sbjct: 198 LEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKI 257 Query: 325 DRERGRVSLSTKKLEPTP 272 + E R+SL K+L P Sbjct: 258 NHETHRISLGMKQLLDDP 275 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI 437 + + + +K ++++ E R+ L ++ + D +A+ + + G V ++ YGAF+++ Sbjct: 246 IGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVEL 305 Query: 436 G-GINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 263 GI GL+HVS++S + ++ ++V +L D + R+SL K+ Sbjct: 306 EPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQ-------T 358 Query: 262 IRNPKLVF 239 +RNP VF Sbjct: 359 MRNPWEVF 366
>RS1_STAAW (Q8NWM8) 30S ribosomal protein S1| Length = 391 Score = 84.7 bits (208), Expect = 2e-16 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ + Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I Sbjct: 189 QSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S DR+ R+SLS K PTP + I+ Sbjct: 249 SIDRDTERISLSIKDTLPTPFENIK 273 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ +++ +K +D + R+ LS + + + + Q V+ G V L Sbjct: 232 TPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVSLS K Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 FDEENETGAYILSRRQLE 93
>RS1_STAAS (Q6G987) 30S ribosomal protein S1| Length = 391 Score = 84.7 bits (208), Expect = 2e-16 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ + Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I Sbjct: 189 QSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S DR+ R+SLS K PTP + I+ Sbjct: 249 SIDRDTERISLSIKDTLPTPFENIK 273 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ +++ +K +D + R+ LS + + + + Q V+ G V L Sbjct: 232 TPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVSLS K Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 FDEENETGAYILSRRQLE 93
>RS1_STAAR (Q6GGT5) 30S ribosomal protein S1| Length = 391 Score = 84.7 bits (208), Expect = 2e-16 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ + Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I Sbjct: 189 QSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S DR+ R+SLS K PTP + I+ Sbjct: 249 SIDRDTERISLSIKDTLPTPFENIK 273 Score = 62.4 bits (150), Expect = 1e-09 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ +++ +K +D + R+ LS + + + + Q + G V L Sbjct: 232 TPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEGVVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVSLS K Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 FDEENETGAYILSRRQLE 93
>RS1_STAAC (Q5HFU7) 30S ribosomal protein S1| Length = 391 Score = 84.7 bits (208), Expect = 2e-16 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ + Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I Sbjct: 189 QSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S DR+ R+SLS K PTP + I+ Sbjct: 249 SIDRDTERISLSIKDTLPTPFENIK 273 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ +++ +K +D + R+ LS + + + + Q V+ G V L Sbjct: 232 TPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVSLS K Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + E G LS ++LE Sbjct: 76 FDEENETGAYILSRRQLE 93
>RS1_MYCTU (O06147) 30S ribosomal protein S1| Length = 481 Score = 84.3 bits (207), Expect = 3e-16 Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ------ 506 L+ F+P S V + + + KE+ K +E+D+ + +VLS R + +Q++ Sbjct: 144 LRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFL 203 Query: 505 --LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G++ G V S+ +GAF+D+GG++GL+HVS++S + S V+Q GD + V +L Sbjct: 204 NNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVL 263 Query: 331 SHDRERGRVSLSTKKLEPTP 272 D +R RVSLS K + P Sbjct: 264 DVDMDRERVSLSLKATQEDP 283 Score = 59.3 bits (142), Expect = 1e-08 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDIG-G 431 E+ ++ ++VD ++ R+ LS + D IG +V G V L P+GAF+ + G Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316 Query: 430 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 287 I GL+H+S+++ V V+ GD V ++ D ER R+SLS K+ Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ 364
>RS1_MYCLE (P46836) 30S ribosomal protein S1| Length = 481 Score = 83.6 bits (205), Expect = 5e-16 Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 10/140 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 509 L+ F+P S V + + + KE+ K +E+D+ + +VLS R + +Q+ Sbjct: 144 LRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFL 203 Query: 508 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 QL G++ G V S+ +GAF+D+GG++GL+HVS++S + S V+Q G+ + V +L Sbjct: 204 NQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVL 263 Query: 331 SHDRERGRVSLSTKKLEPTP 272 D +R RVSLS K + P Sbjct: 264 DVDMDRERVSLSLKATQEDP 283 Score = 59.3 bits (142), Expect = 1e-08 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDIG-G 431 E+ ++ ++VD ++ R+ LS + D IG +V G V L P+GAF+ + G Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316 Query: 430 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 287 I GL+H+S+++ V V+ GD V ++ D ER R+SLS K+ Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ 364
>RS1_STAEQ (Q5HP69) 30S ribosomal protein S1| Length = 392 Score = 82.0 bits (201), Expect = 1e-15 Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAM---------ADSQ 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ A Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQLENDAKKASIL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G+ +KV + Sbjct: 189 DSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S +++ R+SLS K PTP + I+ Sbjct: 249 SVEKDSERISLSIKDTLPTPFENIK 273 Score = 59.7 bits (143), Expect = 8e-09 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Frame = -1 Query: 619 TAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKP 458 T EE++ + + +K V+++ R+ LS + + + + + V+ GTV L Sbjct: 232 TPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVIEGTVVRLAN 291 Query: 457 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +GAF++I + GL+H+S+I H + + VL+PG + V IL D + R+SLS K Sbjct: 292 FGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATL 351 Query: 280 P 278 P Sbjct: 352 P 352 Score = 32.7 bits (73), Expect = 0.99 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + + G LS ++LE Sbjct: 76 FDEENDTGAYILSKRQLE 93
>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1| Length = 392 Score = 81.3 bits (199), Expect = 2e-15 Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 11/145 (7%) Frame = -1 Query: 658 KAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ--------- 512 + FVP S +S+ + + D + + +K E+D E R++LS RKA+ ++ Sbjct: 130 RGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQAENDVKKASLL 188 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 L G V+ G V L +GAF+DIGG++GL+HVS++SH+ V V+ G + V + Sbjct: 189 ESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVK 248 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIR 257 S +++ R+SLS K PTP + I+ Sbjct: 249 SVEKDAERISLSIKDTLPTPFESIK 273 Score = 61.2 bits (147), Expect = 3e-09 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Frame = -1 Query: 598 KELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDIG- 434 +E+ +K V+++ R+ LS + + + Q V+ G V L +GAF++I Sbjct: 241 QEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHEDDVIEGKVVRLANFGAFVEIAP 300 Query: 433 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 278 G+ GL+H+S+I+H+ + L+PG + V IL D E R+SLS K P Sbjct: 301 GVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLP 352 Score = 33.1 bits (74), Expect = 0.76 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 335 G V G V+ ++ + I G NG++ +SQ+S + + S V++ GD ++ + Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTKIE 75 Query: 334 LSHDRERGRVSLSTKKLE 281 + + + G LS ++LE Sbjct: 76 VDEENDSGVYILSKRQLE 93
>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1| Length = 580 Score = 79.3 bits (194), Expect = 9e-15 Identities = 44/144 (30%), Positives = 85/144 (59%), Gaps = 10/144 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADSQ 512 ++AF+P SQ+ +K ++ + K K ++++ E+ +V+S R+ + A+ Sbjct: 155 MEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAELI 214 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+ S +++ L+V+IL Sbjct: 215 EQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274 Query: 331 SHDRERGRVSLSTKKLEPTPGDMI 260 S D+E+GRV+L K+ E P + I Sbjct: 275 SVDKEKGRVALGLKQKEHNPWEDI 298 Score = 73.9 bits (180), Expect = 4e-13 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 437 L++EL + + VD+E+GR+ L ++ D + + G VLG + L PYGAFI+I Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEI 324 Query: 436 -GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 263 GI GL+H+S++S + D S V+ GD ++ ++LS ++ G++SL K+ E P D Sbjct: 325 EEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDN 384 Query: 262 I 260 I Sbjct: 385 I 385 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 5/102 (4%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLH 413 + VD+E ++ L ++ ++ +A G+V+ G V + +GAF+++ GI GL+H Sbjct: 448 LSVDKESKKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIH 507 Query: 412 VSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 287 VS++S A I ++ G+ + ++ D + +VSLS K+ Sbjct: 508 VSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKE 549 Score = 53.1 bits (126), Expect = 7e-07 Identities = 36/135 (26%), Positives = 76/135 (56%), Gaps = 8/135 (5%) Frame = -1 Query: 640 SQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVL----SNRKAMADSQAQLGIGSVVLG 479 S V + E+++K E+ + + +++G++ L + R + + + IG V Sbjct: 338 SWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYPIGLHVNA 397 Query: 478 TVESLKPYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRV 305 +++L YGAF+++ GI GL+H+S +S +V+ S + + G++++ +ILS D+E ++ Sbjct: 398 EIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKI 457 Query: 304 SLSTKKLEPTPGDMI 260 +L K+L P + I Sbjct: 458 TLGVKQLSSNPWNEI 472 Score = 38.5 bits (88), Expect = 0.018 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Frame = -1 Query: 607 LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ-----AQLGIGSVVLGTVESLKPYGAFI 443 +L E+ + + ++E+G++VLS KA Q A GS+V G + G + Sbjct: 92 VLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIV 151 Query: 442 DIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 284 DI G+ L SQI + ++ ++ + G + IL + ER + +S ++L Sbjct: 152 DI-GMEAFLPGSQIDNKKIKNLDDYV--GKVCEFKILKINVERRNIVVSRREL 201
>ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 642 Score = 78.2 bits (191), Expect = 2e-14 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 12/142 (8%) Frame = -1 Query: 661 LKAFVPFSQVS--SKTTAEELLDKELPLKFVEVD--EEQGRLVLSNRKAMADSQAQ---- 506 ++ F+P S V +E + K + +E + Q ++V S R ++ + + Sbjct: 417 IRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEET 476 Query: 505 ----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 338 L G VV G V+ L +GAF++I G++GLLHVS+IS RV + VL+ GD +KV Sbjct: 477 VWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVY 536 Query: 337 ILSHDRERGRVSLSTKKLEPTP 272 +LS D+E ++SLS KKL P Sbjct: 537 VLSVDKENKKLSLSVKKLTENP 558 Score = 64.7 bits (156), Expect = 2e-10 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 5/104 (4%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLH 413 + VD+E +L LS +K + + + +GSVVLG V +GAF+ + G++GL+H Sbjct: 538 LSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADFGAFVKLEPGVDGLVH 597 Query: 412 VSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 281 +S+ISH R+A S L G+ +K IL E ++ LS +++E Sbjct: 598 ISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVE 641
>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)| Length = 570 Score = 75.9 bits (185), Expect = 1e-13 Identities = 43/144 (29%), Positives = 85/144 (59%), Gaps = 10/144 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADSQ 512 ++AF+P SQ+ +K ++ + K K ++++ ++ +V+S R+ + A+ Sbjct: 155 MEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELI 214 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+ S +++ L+V+IL Sbjct: 215 EQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274 Query: 331 SHDRERGRVSLSTKKLEPTPGDMI 260 S D+E+GRV+L K+ E P + I Sbjct: 275 SVDKEKGRVALGLKQKEHNPWEDI 298 Score = 72.4 bits (176), Expect = 1e-12 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 437 L++EL + + VD+E+GR+ L ++ D + + G V G + L PYGAFI+I Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI 324 Query: 436 -GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 263 GI GL+HVS++S + D + V+ GD ++V++LS ++ G++SL K+ E P D Sbjct: 325 EEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDN 384 Query: 262 I 260 I Sbjct: 385 I 385 Score = 59.3 bits (142), Expect = 1e-08 Identities = 38/135 (28%), Positives = 78/135 (57%), Gaps = 8/135 (5%) Frame = -1 Query: 640 SQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLG 479 S V + E+++K E+ + + + +++G++ L ++ + + + IG V Sbjct: 338 SWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTA 397 Query: 478 TVESLKPYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRV 305 +++L YGAF+++ GI GL+H+S +S +V+ S + + G+T++ +ILS D+E ++ Sbjct: 398 EIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKI 457 Query: 304 SLSTKKLEPTPGDMI 260 +L K+L P P D I Sbjct: 458 TLGVKQLTPNPWDEI 472 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 5/102 (4%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLH 413 + VD+E ++ L ++ + +A +GS + G V + +GAF+++ GI GL+H Sbjct: 448 LSVDKESKKITLGVKQLTPNPWDEIEAMFPVGSDISGIVTKITAFGAFVELQNGIEGLIH 507 Query: 412 VSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 287 VS++S A I +L GD + ++ D + +VSLS K+ Sbjct: 508 VSKLSDKPFAKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKE 549 Score = 36.6 bits (83), Expect = 0.068 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADSQ-----AQLGIGSVVLGTVESLKPYGAFIDIGG 431 E+ + + ++E+G++VLS KA Q A GS+V G + G +DI G Sbjct: 96 EVEVYLDQTEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-G 154 Query: 430 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 284 + L SQI + ++ ++ + G + IL + +R V +S ++L Sbjct: 155 MEAFLPGSQIDNKKIKNLDDYV--GKVCEFKILKINVDRRNVVVSRREL 201
>RS1_CHLTR (O84100) 30S ribosomal protein S1| Length = 569 Score = 75.9 bits (185), Expect = 1e-13 Identities = 43/144 (29%), Positives = 85/144 (59%), Gaps = 10/144 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADSQ 512 ++AF+P SQ+ +K ++ + K K ++++ ++ +V+S R+ + A+ Sbjct: 155 MEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELI 214 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+ S +++ L+V+IL Sbjct: 215 EQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274 Query: 331 SHDRERGRVSLSTKKLEPTPGDMI 260 S D+E+GRV+L K+ E P + I Sbjct: 275 SVDKEKGRVALGLKQKEHNPWEDI 298 Score = 70.9 bits (172), Expect = 3e-12 Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 6/121 (4%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 437 L++EL + + VD+E+GR+ L ++ D + + G V G + L PYGAFI+I Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI 324 Query: 436 -GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 263 GI GL+HVS++S + D + V+ GD ++V++LS ++ G++SL K+ + P D Sbjct: 325 EEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDN 384 Query: 262 I 260 I Sbjct: 385 I 385 Score = 59.7 bits (143), Expect = 8e-09 Identities = 38/135 (28%), Positives = 78/135 (57%), Gaps = 8/135 (5%) Frame = -1 Query: 640 SQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLG 479 S V + E+++K E+ + + + +++G++ L ++ + + + IG V Sbjct: 338 SWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTA 397 Query: 478 TVESLKPYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRV 305 +++L YGAF+++ GI GL+H+S +S +V+ S + + G+T++ +ILS D+E ++ Sbjct: 398 EIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKI 457 Query: 304 SLSTKKLEPTPGDMI 260 +L K+L P P D I Sbjct: 458 TLGVKQLTPNPWDEI 472 Score = 56.6 bits (135), Expect = 6e-08 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Frame = -1 Query: 577 VEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLH 413 + VD+E ++ L ++ + + +GS + G V + +GAF+++ GI GL+H Sbjct: 448 LSVDKESKKITLGVKQLTPNPWDEIEVMFPVGSDISGVVTKITAFGAFVELQNGIEGLIH 507 Query: 412 VSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 266 VS++S A I VL GD + ++ D + +VSLS K+ GD Sbjct: 508 VSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEFLVHGGD 556
>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 635 Score = 70.5 bits (171), Expect = 4e-12 Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 12/142 (8%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQG--RLVLSNRKAMADSQAQ---- 506 ++ F+P S V + + + K EL + +E +E + R+V S R + + Q++ Sbjct: 409 VRVFIPASHVELRHVDDLSIYKGCELTVNIIEFEEGRNNTRIVASRRDLLKEEQSKVEEE 468 Query: 505 ----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 338 L ++ G V L +GAF++I G++GLLHVS+IS RV S +L+ GD +KV Sbjct: 469 TWSSLEKDTIKEGEVRRLTDFGAFVNINGVDGLLHVSEISWGRVEKPSDMLKVGDKIKVY 528 Query: 337 ILSHDRERGRVSLSTKKLEPTP 272 I D+++ +++LS K L P Sbjct: 529 IKDIDKDKKKLALSIKDLTKDP 550 Score = 67.0 bits (162), Expect = 5e-11 Identities = 34/102 (33%), Positives = 63/102 (61%), Gaps = 5/102 (4%) Frame = -1 Query: 574 EVDEEQGRLVLS----NRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHV 410 ++D+++ +L LS + D + + +G++VLGTV +GAF+++ G++GL+H+ Sbjct: 531 DIDKDKKKLALSIKDLTKDPWKDVEVKYPVGNIVLGTVVRFASFGAFVELEPGVDGLIHI 590 Query: 409 SQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 284 SQISH RV + L G+ +K I+ D E+ ++ LS K++ Sbjct: 591 SQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIKEV 632
>GS13_BACSU (P80870) General stress protein 13 (GSP13)| Length = 129 Score = 63.5 bits (153), Expect = 5e-10 Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 A+ +GSV G V L+ YGAF+ + GL+H+S+++H V DI+ L GD ++V + Sbjct: 2 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 61 Query: 334 LSHDRERGRVSLSTKKLEPTPGDMIRNPK 248 L+ D E+G++SLS + + P P+ Sbjct: 62 LAVDEEKGKISLSIRATQAAPEKKESKPR 90
>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1| Length = 552 Score = 62.0 bits (149), Expect = 2e-09 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 6/140 (4%) Frame = -1 Query: 595 ELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDIGG- 431 E+ +K + DEE+ RL LS + + D Q +L G + V +++ YG F+DIG Sbjct: 248 EVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIGND 307 Query: 430 INGLLHVSQISHDR-VADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 254 I G LHVS+IS D+ V+ S L G + V I+ D + R+ +S K+L P D Sbjct: 308 IEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD---- 363 Query: 253 PKLVFEKADEMAQIFRQRIA 194 VFE ++ I ++A Sbjct: 364 ---VFESKHQVGDIVEGKVA 380 Score = 60.1 bits (144), Expect = 6e-09 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Frame = -1 Query: 652 FVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGSV---- 488 F+ S S K A + K + + VD+E + +S ++ + + QL I Sbjct: 141 FLSRSHSSLKNDANHI-GKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA 199 Query: 487 ---VLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRE 317 VLG V + P+G F+ GI+GL+H S+ISH + + GD + V +++D E Sbjct: 200 TEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEE 259 Query: 316 RGRVSLSTKKLEPTPGDMIRN 254 + R+SLS K P + I++ Sbjct: 260 KRRLSLSIKATIEDPWEEIQD 280 Score = 59.7 bits (143), Expect = 8e-09 Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 6/115 (5%) Frame = -1 Query: 598 KELPLKFVEVDEEQGRLVLSNRKA------MADSQAQLGIGSVVLGTVESLKPYGAFIDI 437 +E+ +K +++D + RL +S ++ + +S+ Q +G +V G V +L +GAF+++ Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDIVEGKVATLTDFGAFLNL 391 Query: 436 GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 GG++GLLH D+ + GD +KV IL +++ ++SLS K L +P Sbjct: 392 GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSP 446
>RS1_HELPY (P56008) 30S ribosomal protein S1| Length = 556 Score = 60.1 bits (144), Expect = 6e-09 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Frame = -1 Query: 661 LKAFVPFSQVSSK--TTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QAQ 506 ++ V +S++S K E+ + E+ +K + D E+ RL LS + + D Q + Sbjct: 226 IEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDK 285 Query: 505 LGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDR-VADISTVLQPGDTLKVMIL 332 L G + V +++ YG F+DIG I G LHVS+IS D+ V+ + L G + V I+ Sbjct: 286 LKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKII 345 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIA 194 D + R+ +S K+L P D VFE ++ + ++A Sbjct: 346 DIDPKNRRLRVSLKQLTNRPFD-------VFESKHQVGDVLEGKVA 384 Score = 59.7 bits (143), Expect = 8e-09 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Frame = -1 Query: 652 FVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLS--------NRKAMADSQAQLGI 497 F+ S S K A + K + + VD+E + +S +++ + S+ L Sbjct: 145 FLSRSHSSLKNDANHI-GKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203 Query: 496 GSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRE 317 VLG V + P+G F++ GI GL+H S+ISH + + GD + V +++D E Sbjct: 204 TEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAE 263 Query: 316 RGRVSLSTKKLEPTPGDMIRN 254 + R+SLS K P + I++ Sbjct: 264 KRRLSLSIKATIEDPWEEIQD 284 Score = 58.9 bits (141), Expect = 1e-08 Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 6/115 (5%) Frame = -1 Query: 598 KELPLKFVEVDEEQGRLVLSNRKA------MADSQAQLGIGSVVLGTVESLKPYGAFIDI 437 +E+ +K +++D + RL +S ++ + +S+ Q +G V+ G V +L +GAF+++ Sbjct: 338 QEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDVLEGKVATLTDFGAFLNL 395 Query: 436 GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 272 GG++GLLH D+ + GD +KV IL +++ ++SLS K L +P Sbjct: 396 GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSP 450
>YHGF_ECOLI (P46837) Protein yhgF| Length = 773 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G ++ G V ++ +GAF+DIG +GL+H+S +S+ V D TV++ GD +KV +L D Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDL 710 Query: 319 ERGRVSLSTKKLEPTPGD 266 +R R++L T +L+ PG+ Sbjct: 711 QRKRIAL-TMRLDEQPGE 727
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 57.8 bits (138), Expect = 3e-08 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 4/88 (4%) Frame = -1 Query: 499 IGSVVLGTVESLKPYGAFIDIGGIN----GLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 IG + G V S++ +GAFI + G GL+H+SQI ++RV ++ VL+ G+ +KV + Sbjct: 233 IGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV- 291 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIRNPK 248 + E G++SLS K+++ G+ + NP+ Sbjct: 292 -NKIENGKISLSMKEVDQNSGEDL-NPR 317
>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) (CAP87K) Length = 709 Score = 57.8 bits (138), Expect = 3e-08 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Frame = -1 Query: 622 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 443 TT E ++ + +K D E+ + +S + + A++ +G + G V + +GAF+ Sbjct: 585 TTIE--IEDDGTVKIAATDGEKAKHAISR---IEEITAEIEVGRIYAGKVTRIVDFGAFV 639 Query: 442 DIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 266 IGG GL+H+SQI+ RV ++ LQ G V +L DR+ GRV LS K E T G Sbjct: 640 AIGGGKEGLVHISQIADKRVEKVADYLQVGQETSVKVLEIDRQ-GRVRLSIK--EATAGT 696 Query: 265 MI 260 + Sbjct: 697 AV 698
>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 709 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Frame = -1 Query: 604 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGI 428 +D + +K VD + V+ + + A++ G + G V L +GAF+ I G Sbjct: 588 IDDDGTVKIAAVDSNAAKNVMGRIEEIV---AEVEAGVIYKGKVTRLADFGAFVAIVGNK 644 Query: 427 NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 278 GL+H+SQI+ +RV +S LQ G + V ++ DR+ GR+ L+ K L P Sbjct: 645 EGLVHISQIAEERVEKVSDYLQVGQEVNVKVVEIDRQ-GRIRLTMKDLAP 693
>YABR_BACSU (P37560) Hypothetical protein yabR| Length = 128 Score = 57.4 bits (137), Expect = 4e-08 Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 4/93 (4%) Frame = -1 Query: 499 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 323 +GS + G + + +GAF+++ GG GL+H+S+++ + V DI+ L+ GD ++V +++ + Sbjct: 5 VGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVE 64 Query: 322 RERGRVSLSTKKLEPTPGDMIRN---PKLVFEK 233 ++ G++ LS KK + P RN PK FE+ Sbjct: 65 KD-GKIGLSIKKAKDRPQARPRNDFRPKESFEQ 96
>YHGF_NEIMB (Q51152) Hypothetical protein NMB0075| Length = 757 Score = 57.0 bits (136), Expect = 5e-08 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 + L +G ++ G V ++ +GAF+DIG +GL+H+S +S+ V D V++ GD +KV + Sbjct: 635 SDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKV 694 Query: 334 LSHDRERGRVSLSTKKLEPTPG 269 L D R R++L T +L+ PG Sbjct: 695 LEVDAARKRIAL-TMRLDDEPG 715
>YHGF_NEIMA (P57072) Hypothetical protein NMA0194| Length = 757 Score = 57.0 bits (136), Expect = 5e-08 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 + L +G ++ G V ++ +GAF+DIG +GL+H+S +S+ V D V++ GD +KV + Sbjct: 635 SDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKV 694 Query: 334 LSHDRERGRVSLSTKKLEPTPG 269 L D R R++L T +L+ PG Sbjct: 695 LEVDAARKRIAL-TMRLDDEPG 715
>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 711 Score = 56.6 bits (135), Expect = 6e-08 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%) Frame = -1 Query: 622 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 443 TT E ++ + +K D E+ + + + + + A++ +G V G V + +GAF+ Sbjct: 585 TTIE--IEDDGTVKIAATDGEKAKHAI---RRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 Query: 442 DIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 287 IGG GL+H+SQI+ RV ++ LQ G + V +L DR+ GR+ LS K+ Sbjct: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691
>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 827 Score = 56.6 bits (135), Expect = 6e-08 Identities = 32/100 (32%), Positives = 53/100 (53%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 332 A L +G +V V + +G +DI + G +H+S++S R+ +S + GD +K +++ Sbjct: 472 AGLAVGQIVDCVVTEVLDFGLAVDINTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVV 531 Query: 331 SHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQI 212 S D + V LS KKLE P + N F+ DE+ I Sbjct: 532 SLDEAKRNVKLSIKKLEEDPWATVANE---FKVDDEIEGI 568 Score = 47.4 bits (111), Expect = 4e-05 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 11/141 (7%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG- 500 LK F+ S+VS K ++L D ++ V +DE + + LS +K D A + Sbjct: 499 LKGFIHISEVSWKRL-DKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDPWATVAN 557 Query: 499 ---IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQIS-HDRVADISTVLQPGDTLKVMI 335 + + G V + PYGAF++I G+ GL+H+S S + +++ ++ + +KV I Sbjct: 558 EFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKEREKIKVRI 617 Query: 334 LSHDRERGRVSLSTKKLEPTP 272 E ++ L K+L P Sbjct: 618 TDLHPEDRKLKLGIKQLVANP 638 Score = 45.1 bits (105), Expect = 2e-04 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%) Frame = -1 Query: 604 LDKELPLKFVEVD----EEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFID- 440 + E+ LK E+D + +G L + + + +G+ V ++++ +G FI+ Sbjct: 693 IGNEVELKITELDLNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVADFGLFIEL 752 Query: 439 IGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 260 I GI+G + S + + +I GD +K ++ ++E ++ LS KK+E Sbjct: 753 IKGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLSIKKIE------- 805 Query: 259 RNPKLVFEKADEMAQIFRQRIAQAE 185 + EK +E QI + + +E Sbjct: 806 ----IEEEKREEREQIEKYSTSSSE 826
>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 693 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Frame = -1 Query: 622 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 443 TT E ++ + +K V +E+ + + K + A++ +GSV G V + +GAF+ Sbjct: 585 TTIE--IEDDGTVKISAVMQEKAKCAIQRIKEIT---AEVEVGSVYTGKVTRIVDFGAFV 639 Query: 442 DIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 290 IG G GL+H+SQI+H RV +S L+ + V +L DR+ GR+ LS K Sbjct: 640 SIGIGKEGLVHISQIAHKRVDKVSDHLRLHQEIFVKVLEVDRQ-GRLRLSIK 690
>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 707 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 A++ +G + G V + +GAFI IG G GL+H+SQIS+ RV +S L + V + Sbjct: 617 AEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISNKRVEKVSDHLTVDQIISVKV 676 Query: 334 LSHDRERGRVSLSTKKLE 281 L DR+ GR+ LS K++E Sbjct: 677 LEIDRQ-GRLRLSIKEVE 693
>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 707 Score = 53.9 bits (128), Expect = 4e-07 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 A++ +G + G V + +GAF+ IG G GL+H+SQIS RV +S L+ + V + Sbjct: 617 AEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDKRVDKVSNHLKIDQIISVKV 676 Query: 334 LSHDRERGRVSLSTKKLE 281 L DR+ GR+ LS K+++ Sbjct: 677 LEIDRQ-GRLRLSIKEID 693
>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 266 Score = 53.9 bits (128), Expect = 4e-07 Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDI---GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 G +V+GTV+ +KPYGAF+++ G G++H+S+++ V +I ++ G + +L Sbjct: 12 GDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKVLRV 71 Query: 325 DRERGRVSLSTKKL 284 D +G + LS K++ Sbjct: 72 DERKGHIDLSLKRV 85
>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5| Length = 1729 Score = 52.0 bits (123), Expect = 2e-06 Identities = 35/138 (25%), Positives = 74/138 (53%), Gaps = 14/138 (10%) Frame = -1 Query: 661 LKAFVPFSQVSSKTTAEELLDKELPLKFV----EVDEEQGRLVLSNRKA-------MADS 515 ++AFVP S++S + +E P+++V +E R+ L+ R++ + + Sbjct: 1200 VEAFVPVSKLSD-SYLKEWKKFYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKT 1258 Query: 514 QAQLGIGSVVLGTVESLKPYGAFIDIGG---INGLLHVSQISHDRVADISTVLQPGDTLK 344 + + G V GT++S+ +G F+ + + GL H+++I+ + D+S + GD +K Sbjct: 1259 YSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVK 1318 Query: 343 VMILSHDRERGRVSLSTK 290 ++L + E+ ++SLS K Sbjct: 1319 AIVLKTNPEKKQISLSLK 1336
>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 706 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Frame = -1 Query: 511 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMI 335 A++ + + G V + +GAF+ IGG GL+H+SQI+ RV ++ LQ G + V + Sbjct: 617 AEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQMGQEVPVKV 676 Query: 334 LSHDRERGRVSLSTKK 287 + DR+ GR+ LS K+ Sbjct: 677 IEVDRQ-GRIRLSMKE 691
>IF2A_AERPE (Q9YF02) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 277 Score = 50.4 bits (119), Expect = 5e-06 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Frame = -1 Query: 547 VLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI---DIGGINGLLHVSQISHDRVADI 377 +L RK + D +G +V+GTV+ + YGA++ + GG+ L S+I+ V +I Sbjct: 11 LLKPRKPLPD------VGEIVVGTVQEVHDYGAYLILDEYGGVRAFLPWSEIASRAVRNI 64 Query: 376 STVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRI 197 VL+P + V ++ ++RG+V +S K++ D + K++F K A + I Sbjct: 65 HAVLKPRQKVVVKVIRVYKKRGQVDVSLKRVM----DSEKKRKMMFYKRYLKAATLVELI 120 Query: 196 AQ 191 A+ Sbjct: 121 AE 122
>Y568_HAEIN (P71353) Hypothetical protein HI0568| Length = 762 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G ++ GTV ++ +GAF+DIG +GL+H+S +S V D V++ G+ +KV +L D Sbjct: 651 GMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDV 710 Query: 319 ERGRVSLSTK 290 R R++L+ + Sbjct: 711 PRKRIALTMR 720
>IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 275 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 G V+ TV+++ PYGAF+ + G G +H+S+++ V +I L+ G + ++ Sbjct: 12 GEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRV 71 Query: 325 DRERGRVSLSTKKL 284 D E+G + LS K++ Sbjct: 72 DPEKGHIDLSLKRV 85
>TEX_BORPE (Q45388) Protein tex| Length = 791 Score = 46.2 bits (108), Expect = 9e-05 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G V+ G V ++ +GAF+DIG +GL+H+S ++ V D V++ G T+ V +L D Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDV 729 Query: 319 ERGRVSLSTK 290 R RV+L+ + Sbjct: 730 ARKRVALTMR 739
>IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 275 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 G +V+ TV+ + YGAF+D+ G G +H+S+++ V +I L+ G + ++ Sbjct: 12 GELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLREGQKVVAKVIRV 71 Query: 325 DRERGRVSLSTKKL 284 D ++G + LS +++ Sbjct: 72 DPKKGHIDLSLRRV 85
>IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 267 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 G +V+GTV+ + +GAF+ + G G++H+S+++ + DI ++ G + +L Sbjct: 17 GEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICKVLDV 76 Query: 325 DRERGRVSLSTK 290 + +RG + LS K Sbjct: 77 NPKRGHIDLSIK 88
>RPOE_SULAC (P39466) DNA-directed RNA polymerase subunit E (EC 2.7.7.6)| Length = 183 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 11/76 (14%) Frame = -1 Query: 499 IGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADIST-----------VLQPGD 353 I V+ G V + YG ++++G ++GL+H+SQI+ D + S +Q GD Sbjct: 81 IHEVIEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSIQKGD 140 Query: 352 TLKVMILSHDRERGRV 305 ++ MI+S GR+ Sbjct: 141 RVRAMIISASMSSGRL 156
>IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 267 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 G +V+ TVE ++ +GAF+ + G++G +H+S+++ V +I ++ G + ++ Sbjct: 12 GEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKEGQKVVAKVIRV 71 Query: 325 DRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 191 + +R +LS +K+ D R KL K ++ A+ + A+ Sbjct: 72 NPKRKYANLSLRKVT----DHQRKEKLKEWKREQRAEKLLEMAAE 112
>NO40_MOUSE (Q9ESX4) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC| domain-containing protein 7) (Putative S1 RNA-binding domain protein) (PS1D protein) Length = 241 Score = 40.8 bits (94), Expect = 0.004 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Frame = -1 Query: 493 SVVLGTVESLKPYGAFIDIGGI--NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD- 323 ++ G V + YGAFI I G GL+H + +S RV S ++ GD + V ++ + Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76 Query: 322 -RERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 191 +R +VSLS K + G + +V E+ + + F+ Q Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDLDPNNVVIEQEERRRRSFQDYTGQ 121
>NO40_HUMAN (Q9NP64) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC| domain-containing protein 7) (Putative S1 RNA binding domain protein) (PS1D protein) (Pnn-interacting nucleolar protein) Length = 241 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Frame = -1 Query: 493 SVVLGTVESLKPYGAFIDIGGI--NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD- 323 ++ G V + YGAFI I G GL+H + +S RV S ++ GD + V ++ + Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76 Query: 322 -RERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 191 +R +VSLS K + G + ++ E+ + + F+ Q Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQ 121
>IF2A_METTH (O27363) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 262 Score = 39.3 bits (90), Expect = 0.011 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFI---DIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 326 G +V+GTV + YGAF + G +H+S++S V +I ++ + +L Sbjct: 15 GELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRENQKIVARVLRV 74 Query: 325 DRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 191 + +G V +S K++ R K+ K ++ A+ F + A+ Sbjct: 75 NPRKGHVDVSMKRIREDQ----RTKKIQAWKIEQKAEKFLELAAR 115
>RPOE1_METJA (Q57840) DNA-directed RNA polymerase subunit E' (EC 2.7.7.6)| Length = 187 Score = 37.0 bits (84), Expect = 0.052 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 16/84 (19%) Frame = -1 Query: 490 VVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVA-----------DISTVLQPGDTLK 344 ++ G V + +G+F+ +G ++GL+HVSQI D V+ + VL+ GD ++ Sbjct: 84 LIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVR 143 Query: 343 VMI----LSHDRERG-RVSLSTKK 287 I L +R+RG +++L+ ++ Sbjct: 144 ARIVAISLKAERKRGSKIALTMRQ 167
>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death protein 11)| Length = 1871 Score = 33.1 bits (74), Expect = 0.76 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Frame = -1 Query: 505 LGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADIS--TVLQPGDTLKVMI 335 L IG +V GTV+S+KP + + GI G +H S I D S T L+ G T+ + Sbjct: 1033 LSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKTVTARV 1092 Query: 334 L 332 + Sbjct: 1093 I 1093 Score = 32.7 bits (73), Expect = 0.99 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -1 Query: 496 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 320 G+VV GTV ++K YG + +G + GL+ ++ + + GD +K +L D Sbjct: 453 GAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDP 512 Query: 319 ERGRVSLSTKK 287 E ++ ++ KK Sbjct: 513 EAKKLMMTLKK 523
>RNR_BUCAP (Q8K917) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein| homolog) Length = 726 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 13/84 (15%) Frame = -1 Query: 508 QLGIGSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQP-------- 359 Q IG V+ G + ++ +G F+ + I+GL+H++ + D S L+ Sbjct: 638 QKKIGDVLTGVISNVTSFGFFVRLNQFFIDGLVHIATLIDDYYYFDSIGLKLIGKSSKNT 697 Query: 358 ---GDTLKVMILSHDRERGRVSLS 296 GDTLKV ++S + ++ LS Sbjct: 698 YCLGDTLKVKVISVNLNERKIELS 721
>PCCA_CAEBR (Q612F5) Propionyl-CoA carboxylase alpha chain, mitochondrial| precursor (EC 6.4.1.3) (PCCase alpha subunit) (Propanoyl-CoA:carbon dioxide ligase alpha subunit) Length = 738 Score = 31.2 bits (69), Expect = 2.9 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 20/82 (24%) Frame = -1 Query: 454 GAFIDIGG------------INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD---- 323 G IDI G +NG +QI R +I TVL G KV +L Sbjct: 598 GKVIDISGNLSLSLPVNSIEVNGEHITTQIVGKRAGEI-TVLYKGTPFKVQVLPEQAVKY 656 Query: 322 ----RERGRVSLSTKKLEPTPG 269 +E+ +V LST L P PG Sbjct: 657 LQYMKEKAKVDLSTVVLSPMPG 678
>RNR_BUCAI (P57628) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein| homolog) Length = 731 Score = 30.4 bits (67), Expect = 4.9 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 13/84 (15%) Frame = -1 Query: 499 IGSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQP----------- 359 IG ++ G + ++ +G F+ + I+GL+H++ ++ D S L+ Sbjct: 646 IGCILNGVISNVTTFGFFVRLNQFFIDGLVHINSLNDDYYYFDSLGLKLIGKSTKNTYCL 705 Query: 358 GDTLKVMILSHDRERGRVSLSTKK 287 GD LKV ++S + ++ LS K Sbjct: 706 GDALKVKVISVNLNEKKIELSLYK 729
>VG05_BPT4 (P16009) Tail-associated lysozyme (EC 3.2.1.17) (Protein Gp5)| Length = 575 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -1 Query: 517 SQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLL 416 S A GIG V G VE + YG F+D NG++ Sbjct: 63 SAAMSGIGGSVTGPVEGTRVYGHFLDKWKTNGIV 96
>DCR1C_BRARE (Q5RGE5) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C| protein) Length = 639 Score = 30.0 bits (66), Expect = 6.4 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%) Frame = -1 Query: 415 HVSQISHDRVADISTVLQPGDTLKVMILSHDRER-------GRVSLSTKKLEPTPGDMIR 257 H+S + ++ + T++ D K L H E +VS S +L PTPG + Sbjct: 557 HISDAGTESLSQVDTIMVQEDHSKACNLQHKTEEAAELKSDSQVS-SDFELPPTPGSKVP 615 Query: 256 NPKLVFEKADEMAQIFRQRIAQAEAMAR 173 P +++ +++R+ A + +AR Sbjct: 616 QP-------EDLKELYRKLAAGEDVVAR 636
>GLYA1_BURTA (Q2SYS4) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 415 Score = 29.6 bits (65), Expect = 8.3 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = -1 Query: 370 VLQPGDTLKVMILSHD---RERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQR 200 +L+PGDT+ M L+H V++S K + N + +E AD++A + + Sbjct: 110 MLKPGDTIMGMSLAHGGHLTHGSPVNMSGKWFNVVSYGLNENEDIDYEAADKLAHEHKPK 169 Query: 199 IAQAEAMARADMLRFQ 152 + A A A A + F+ Sbjct: 170 LIVAGASAFALKIDFE 185
>Y830_CORDI (Q6NIE7) Hypothetical transport protein DIP0830| Length = 541 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -1 Query: 430 INGLL--HVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSL 299 ++G+L V + HD VA TVLQ GD ++V + +HDR + +L Sbjct: 307 LSGILITRVRRGDHDHVATPETVLQLGDRVRV-VAAHDRMKSVTAL 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,031,332 Number of Sequences: 219361 Number of extensions: 1906316 Number of successful extensions: 5780 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 5486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5739 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
