>gb|AY105490.1| Zea mays PCO147287 mRNA sequence
          Length = 727

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 176/218 (80%)
 Strand = Plus / Minus

                                                                       
Query: 324 gttccgccgattaccatgccactccaaactccctttgcgcccagaccaaggtagaaaccc 383
           ||||| ||||| |||||||| |||||||| ||||| ||||| ||  | |||||||| || 
Sbjct: 441 gttcccccgatgaccatgccgctccaaacgcccttggcgccgaggtcgaggtagaagccg 382

                                                                       
Query: 384 atgaatacgcctagcggtatgccgatgaaatagtagcacccaacattcacgtatgccaca 443
           | ||| ||||| ||||| | ||||| ||  |||||||| || || |||||||| ||||||
Sbjct: 381 aggaagacgccgagcggcacgccgacgacgtagtagcaacccacgttcacgtacgccaca 322

                                                                       
Query: 444 aacacctgccaaccgcaccccacagccacaccagaaagcacgggttgaacgccattgagt 503
           ||| ||||||| ||||| ||||| || || || || || || || || | ||| ||||| 
Sbjct: 321 aacgcctgccacccgcagcccacggcgacgccggagaggactggctgtatgccgttgagg 262

                                                 
Query: 504 atgagcgtgatggcgagtagcgggcagaggtcggacac 541
           | |||||||  |||||| ||||||||||||||||||||
Sbjct: 261 acgagcgtggcggcgaggagcgggcagaggtcggacac 224

>ref|XM_462962.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1206

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 104/128 (81%)
 Strand = Plus / Minus

                                                                       
Query: 411 aaatagtagcacccaacattcacgtatgccacaaacacctgccaaccgcaccccacagcc 470
           |||||||||||||| ||||| | ||| ||||||| |   ||||| || ||||| ||||||
Sbjct: 986 aaatagtagcacccgacattgatgtacgccacaatcttttgccatccacacccgacagcc 927

                                                                       
Query: 471 acaccagaaagcacgggttgaacgccattgagtatgagcgtgatggcgagtagcgggcag 530
           |||||||| || ||||| || | ||| ||||| ||||| |||  |||||| |  ||||||
Sbjct: 926 acaccagagaggacgggctggatgccgttgagaatgagagtggcggcgaggaaggggcag 867

                   
Query: 531 aggtcgga 538
           ||||||||
Sbjct: 866 aggtcgga 859

>dbj|AK101639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055G23, full
            insert sequence
          Length = 1734

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 104/128 (81%)
 Strand = Plus / Minus

                                                                        
Query: 411  aaatagtagcacccaacattcacgtatgccacaaacacctgccaaccgcaccccacagcc 470
            |||||||||||||| ||||| | ||| ||||||| |   ||||| || ||||| ||||||
Sbjct: 1398 aaatagtagcacccgacattgatgtacgccacaatcttttgccatccacacccgacagcc 1339

                                                                        
Query: 471  acaccagaaagcacgggttgaacgccattgagtatgagcgtgatggcgagtagcgggcag 530
            |||||||| || ||||| || | ||| ||||| ||||| |||  |||||| |  ||||||
Sbjct: 1338 acaccagagaggacgggctggatgccgttgagaatgagagtggcggcgaggaaggggcag 1279

                    
Query: 531  aggtcgga 538
            ||||||||
Sbjct: 1278 aggtcgga 1271

>gb|AY109462.1| Zea mays CL6325_1 mRNA sequence
          Length = 795

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 110/136 (80%)
 Strand = Plus / Minus

                                                                       
Query: 414 tagtagcacccaacattcacgtatgccacaaacacctgccaaccgcaccccacagccaca 473
           |||||||| ||||  |||||||| ||||| |||  |||||| |||||||| || || |||
Sbjct: 425 tagtagcagccaatgttcacgtaggccacgaactgctgccacccgcacccaacggcgaca 366

                                                                       
Query: 474 ccagaaagcacgggttgaacgccattgagtatgagcgtgatggcgagtagcgggcagagg 533
           || || ||||| || || | ||| ||||| | |||||||| ||| || ||||||||||| 
Sbjct: 365 cctgacagcacaggctggatgccgttgagaacgagcgtgacggcaagcagcgggcagaga 306

                           
Query: 534 tcggacactgcgttgg 549
           |||| ||| |||||||
Sbjct: 305 tcggccaccgcgttgg 290

>ref|XM_462988.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1913

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 495  ccattgagtatgagcgtgatggcgagtagcgggcagag 532
            |||||||| ||||||||||||||||| |||||||||||
Sbjct: 1250 ccattgagaatgagcgtgatggcgaggagcgggcagag 1213

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 495      ccattgagtatgagcgtgatggcgagtagcgggcagag 532
                |||||||| ||||||||||||||||| |||||||||||
Sbjct: 20677829 ccattgagaatgagcgtgatggcgaggagcgggcagag 20677866



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 411      aaatagtagcacccaacattcacgtatgccacaaacacctgccaaccgcaccccacagcc 470
                |||||||||||||| ||||| | ||| ||||||| |   ||||| || ||||| ||||||
Sbjct: 20534726 aaatagtagcacccgacattgatgtacgccacaatcttttgccatccacacccgacagcc 20534785

                     
Query: 471      acacc 475
                |||||
Sbjct: 20534786 acacc 20534790

>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 495   ccattgagtatgagcgtgatggcgagtagcgggcagag 532
             |||||||| ||||||||||||||||| |||||||||||
Sbjct: 91586 ccattgagaatgagcgtgatggcgaggagcgggcagag 91623

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 495      ccattgagtatgagcgtgatggcgagtagcgggcagag 532
                |||||||| ||||||||||||||||| |||||||||||
Sbjct: 20670858 ccattgagaatgagcgtgatggcgaggagcgggcagag 20670895



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 411      aaatagtagcacccaacattcacgtatgccacaaacacctgccaaccgcaccccacagcc 470
                |||||||||||||| ||||| | ||| ||||||| |   ||||| || ||||| ||||||
Sbjct: 20527755 aaatagtagcacccgacattgatgtacgccacaatcttttgccatccacacccgacagcc 20527814

                     
Query: 471      acacc 475
                |||||
Sbjct: 20527815 acacc 20527819

>dbj|AK102204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087G07, full
            insert sequence
          Length = 1918

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 495  ccattgagtatgagcgtgatggcgagtagcgggcagag 532
            |||||||| ||||||||||||||||| |||||||||||
Sbjct: 1264 ccattgagaatgagcgtgatggcgaggagcgggcagag 1227

>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 88     aaacacaaattacaatttagaa 109
              ||||||||||||||||||||||
Sbjct: 150268 aaacacaaattacaatttagaa 150289

>gb|AC091302.5| Oryza sativa chromosome 3 BAC OSJNBb0015I21 genomic sequence, complete
             sequence
          Length = 101073

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                         
Query: 411   aaatagtagcacccaacattcacgtatgccacaaacacctgccaaccgcaccccacagcc 470
             |||||||||||||| ||||| | ||| ||||||| |   ||||| || ||||| ||||||
Sbjct: 48791 aaatagtagcacccgacattgatgtacgccacaatcttttgccatccacacccgacagcc 48850

                  
Query: 471   acacc 475
             |||||
Sbjct: 48851 acacc 48855

>emb|BX510925.7| Zebrafish DNA sequence from clone CH211-278B8 in linkage group 5,
            complete sequence
          Length = 75254

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 22   ctttgaagttcacataaattctgtt 46
            ||||||| |||||||||||||||||
Sbjct: 8252 ctttgaaattcacataaattctgtt 8276

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 248     cgcgtgggccttctcgacctc 268
               |||||||||||||||||||||
Sbjct: 3196175 cgcgtgggccttctcgacctc 3196155

>emb|AL355888.3|CNS05TCZ Human chromosome 14 DNA sequence BAC R-322L17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 214852

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 88     aaacacaaattacaatttagaaata 112
              ||||||||||||||| |||||||||
Sbjct: 137573 aaacacaaattacaaattagaaata 137549

>gb|AC109147.19| Mus musculus chromosome 8, clone RP23-341D16, complete sequence
          Length = 184600

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tacttgtagctacatatttt 191
             ||||||||||||||||||||
Sbjct: 88321 tacttgtagctacatatttt 88340

>gb|AC147901.2| Xenopus tropicalis clone CH216-57C20, complete sequence
          Length = 151523

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 87  taaacacaaattacaatttagaaa 110
           |||||| |||||||||||||||||
Sbjct: 459 taaacataaattacaatttagaaa 436

>gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome 13, complete sequence
          Length = 237830

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    acaactcagttctgagaaat 131
              ||||||||||||||||||||
Sbjct: 221625 acaactcagttctgagaaat 221606

>emb|AL354923.12| Human DNA sequence from clone RP11-192E23 on chromosome 9 Contains the
             3' end of the COL15A1 gene for collagen type XV and a CpG
             island, complete sequence
          Length = 134965

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    caaattacaatttagaaata 112
             ||||||||||||||||||||
Sbjct: 98510 caaattacaatttagaaata 98529

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 251     gtgggccttctcgacctcat 270
               ||||||||||||||||||||
Sbjct: 2920753 gtgggccttctcgacctcat 2920772

>gb|AC007017.4| Arabidopsis thaliana chromosome 2 clone F11F19 map g6825, complete
             sequence
          Length = 120938

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aaattacaatttagaaatac 113
             ||||||||||||||||||||
Sbjct: 17720 aaattacaatttagaaatac 17701

>gb|AC093847.3| Homo sapiens BAC clone RP11-484F3 from 4, complete sequence
          Length = 174926

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     ccacaatactttgaagttcacata 37
              ||||| ||||||||||||||||||
Sbjct: 109789 ccacattactttgaagttcacata 109812

>gb|AC154518.2| Mus musculus BAC clone RP23-211K12 from chromosome 16, complete sequence
          Length = 177189

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 87     taaacacaaattacaatttagaaa 110
              |||| |||||||||||||||||||
Sbjct: 148754 taaatacaaattacaatttagaaa 148777

>gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosome 13, complete sequence
          Length = 191824

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    acaactcagttctgagaaat 131
              ||||||||||||||||||||
Sbjct: 100738 acaactcagttctgagaaat 100757

>gb|AF003529.2| Homo sapiens glypican 3 (GPC3) gene, partial cds and flanking repeat
              regions
          Length = 165658

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    atacaactcagttctgagaa 129
              ||||||||||||||||||||
Sbjct: 159935 atacaactcagttctgagaa 159916

>dbj|AB018121.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2
          Length = 86854

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    aacacaaattacaatttaga 108
             ||||||||||||||||||||
Sbjct: 20423 aacacaaattacaatttaga 20442

>gb|AC002407.1|AC002407 Human Chromosome X, complete sequence
          Length = 95506

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   atacaactcagttctgagaa 129
             ||||||||||||||||||||
Sbjct: 20063 atacaactcagttctgagaa 20044

>emb|AJ329821.1|HSA329821 Homo sapiens genomic sequence surrounding NotI site, clone NR1-SL4R
          Length = 692

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   caccttcccacaatactttg 26
           ||||||||||||||||||||
Sbjct: 619 caccttcccacaatactttg 600

>gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, complete sequence
          Length = 175641

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    tgttgcaatgaatgtttctt 226
              ||||||||||||||||||||
Sbjct: 117017 tgttgcaatgaatgtttctt 117036

>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
             complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    acaaattacaatttagaaatacaa 115
             |||||||||||| |||||||||||
Sbjct: 25243 acaaattacaatctagaaatacaa 25266

>gb|AC154313.2| Mus musculus BAC clone RP23-354M21 from chromosome 12, complete sequence
          Length = 220909

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    acatattttgccactgatca 202
              ||||||||||||||||||||
Sbjct: 134367 acatattttgccactgatca 134386

>gb|AC004402.1|AC004402 Homo sapiens Cosmid g5129z061, complete sequence
          Length = 37539

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   tgttgaatcactttctaagt 62
            ||||||||||||||||||||
Sbjct: 9812 tgttgaatcactttctaagt 9831

>gb|AC167022.4| Mus musculus BAC clone RP23-183A4 from chromosome 8, complete sequence
          Length = 224462

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tacttgtagctacatatttt 191
             ||||||||||||||||||||
Sbjct: 27900 tacttgtagctacatatttt 27881

>emb|AJ404295.1|BSC404295 Borelis schlumbergeri 18S rRNA gene, isolate 191
          Length = 2744

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 tcaatcatgttgcaatgaat 219
           ||||||||||||||||||||
Sbjct: 231 tcaatcatgttgcaatgaat 212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,443,347
Number of Sequences: 3902068
Number of extensions: 4443347
Number of successful extensions: 80741
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80575
Number of HSP's gapped (non-prelim): 166
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)