ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39n18 |
|---|---|
| Clone Library Name | barley_pub |
>PSA6_RAT (P60901) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) Length = 246 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -1 Query: 161 RTKDVRNCFNTSSGEITPMS--PVLVQIVREYCQTLYRCDPPGYYC 30 R D+ + T + E+ P+ +L+ I E +Y+CDP GYYC Sbjct: 117 RIADISQVY-TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC 161
>PSA6_MOUSE (Q9QUM9) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) Length = 246 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -1 Query: 161 RTKDVRNCFNTSSGEITPMS--PVLVQIVREYCQTLYRCDPPGYYC 30 R D+ + T + E+ P+ +L+ I E +Y+CDP GYYC Sbjct: 117 RIADISQVY-TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC 161
>PSA6_HUMAN (P60900) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) (27 kDa prosomal protein) (PROS-27) (p27K) Length = 246 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -1 Query: 161 RTKDVRNCFNTSSGEITPMS--PVLVQIVREYCQTLYRCDPPGYYC 30 R D+ + T + E+ P+ +L+ I E +Y+CDP GYYC Sbjct: 117 RIADISQVY-TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC 161
>GLNA_ARCFU (O29313) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 491 Score = 31.2 bits (69), Expect = 0.64 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%) Frame = +3 Query: 12 PKXPSSTIVPWWITTIQSLAVLTNNLHQYWG-------HRGYLA-----TTSIEAITNIL 155 P S I+PW IQ A++ N+++ WG RGY+A E ++ I Sbjct: 81 PDASSLKIIPWIDDPIQKSAIMFGNVYEAWGTEIADCDPRGYVAKRYEDMLKSEGMSAIF 140 Query: 156 RPEI 167 PEI Sbjct: 141 GPEI 144
>RPOB_CORGL (Q8NT26) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N++ SG TH++ LG GLSR Sbjct: 425 SQFMDQNNSLSGLTHKRRLSALGPGGLSR 453
>RPOB_COREF (Q8FS97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1171 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N++ SG TH++ LG GLSR Sbjct: 431 SQFMDQNNSLSGLTHKRRLSALGPGGLSR 459
>RPOB_CORDI (P60280) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N++ SG TH++ LG GLSR Sbjct: 434 SQFMDQNNSLSGLTHKRRLSALGPGGLSR 462
>YOL4_CAEEL (Q02331) Hypothetical UPF0028 protein ZK370.4 in chromosome III| Length = 1353 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 14/77 (18%) Frame = +3 Query: 3 QPHPKXPSSTIVPWWITTIQSLAVLTNNLHQYWG--------------HRGYLATTSIEA 140 + + K P + I P I + L V LHQY G HR +T+ ++ Sbjct: 353 ESYHKNPEAWIRPIQIVITRLLHVTLTTLHQYMGLSSELMRRRRDDDRHRNGSSTSKLQL 412 Query: 141 ITNILRPEILRNLNDND 191 ++ + E N+NDN+ Sbjct: 413 SLSLKKKEKPFNINDNE 429
>RPOB_CORJK (Q4JT32) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1164 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N++ SG TH++ LG GLSR Sbjct: 419 SQFLDQNNSLSGLTHKRRLSALGPGGLSR 447
>RPOB_MYCPR (Q9RQZ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) (Fragment) Length = 101 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 59 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 87
>RPOB_MYCPA (Q73SE4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 437 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 465
>RPOB2_NOCFA (Q5YPE0) DNA-directed RNA polymerase beta chain 2 (EC 2.7.7.6)| (RNAP beta subunit 2) (Transcriptase beta chain 2) (RNA polymerase beta subunit 2) Length = 1163 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 424 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 452
>RPOB2_MYCSM (P60281) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 456
>RPOB1_MYCSM (Q50388) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 456
>RPOB_MYCTU (P0A680) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 437 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 465
>RPOB_MYCLE (P30760) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 437 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 465
>RPOB_MYCBO (P0A681) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 437 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 465
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 443 SQFMDQNNPLSGLTHKRRLSALGPGGLSR 471
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ SG TH++ LG GLSR Sbjct: 423 SQFMDQNNPLSGLTHKRRLNALGPGGLSR 451
>MATK_EHRAN (Q3HT77) Maturase K (Intron maturase)| Length = 502 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = +3 Query: 6 PHPKXPSSTI--VPWWITTIQSLAVLTNNLHQYWGH 107 PHP P + + +W+ SL +L LH+YW + Sbjct: 151 PHPVHPEILVQTLRFWVKDASSLHLLRFFLHEYWNN 186
>Y089_LACPL (Q890D7) UPF0246 protein lp_0089| Length = 248 Score = 27.7 bits (60), Expect = 7.1 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +3 Query: 21 PSSTIVPWWITTIQSLAV-LTNNLHQYWGHRGYLATTSIEAITNILRPEILRNLNDNDVL 197 P IVP+ + LAV NL+ +WG R Y A T RPE + NL + Sbjct: 116 PFDGIVPYRLEMQARLAVGQAKNLYAFWGDRLYQALTP--------RPEPIINLASQEYA 167 Query: 198 K 200 K Sbjct: 168 K 168
>RPOB_LEIXX (Q6ACX5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ +G TH++ LG GLSR Sbjct: 427 SQFMDQNNPLAGLTHKRRLSALGPGGLSR 455
>HSLO_CAUCR (P58097) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)| Length = 302 Score = 27.3 bits (59), Expect = 9.2 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 92 VQIVREYCQTLYRCDPPG 39 + + EYC +Y+ DPPG Sbjct: 284 IHVTCEYCSRIYKLDPPG 301
>V3A_IBVU4 (P30239) 3A protein| Length = 57 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -2 Query: 94 WCRLFVSTARLCIVVIHQ 41 WC+L +S R C V +HQ Sbjct: 16 WCKLVISCFRECFVALHQ 33
>KINH_CAEEL (P34540) Kinesin heavy chain (Uncoordinated protein 116)| Length = 815 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 29 YNSTLVDHNDTKSGSTHEQSAPVLGTSGLS 118 YN T+ + T SG TH V+G +GLS Sbjct: 80 YNGTVFAYGQTSSGKTHTMEG-VIGDNGLS 108
>RPOB_TROWT (Q93GF2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1157 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ +G TH++ LG GLSR Sbjct: 426 SQFMDQNNPLAGLTHKRRLSALGPGGLSR 454
>RPOB_TROWH (P59643) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1157 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ +G TH++ LG GLSR Sbjct: 426 SQFMDQNNPLAGLTHKRRLSALGPGGLSR 454
>RPOB_TROW8 (P59642) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1157 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 35 STLVDHNDTKSGSTHEQSAPVLGTSGLSR 121 S +D N+ +G TH++ LG GLSR Sbjct: 426 SQFMDQNNPLAGLTHKRRLSALGPGGLSR 454 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,539,333 Number of Sequences: 219361 Number of extensions: 739121 Number of successful extensions: 2059 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2058 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
