>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  414 bits (209), Expect = e-113
 Identities = 318/353 (90%), Gaps = 4/353 (1%)
 Strand = Plus / Minus

                                                                          
Query: 20     accttcatctacaatagtaccctggtggatcacaacgatacaaagtctggcagtactcac 79
              |||||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||| |
Sbjct: 132171 accttcatctacaacag-accctcgtg-atcacaacgatacaaagtatggcagtactccc 132114

                                                                          
Query: 80     gaacaatctgcaccagtactggggacatcggggttatctcgccactactagtattgaagc 139
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132113 gaacaatctgcaccagtactggggacatcggggttatctcgccactactagtattgaagc 132054

                                                                          
Query: 140    aattacgaacatccttcgtcctgagatattaagaaatctgaatgataacgatgtgctcaa 199
              ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 132053 aatcacgaacatccttcgttctgagatactaagaaatctgaatgataacgatgtgctcaa 131994

                                                                          
Query: 200    gaatccactggagctcagnnggggntgagacttagagcagataggaggcaccaagacaga 259
              |||||| ||||||||||        ||||||| | |||||||||||||||||||||||||
Sbjct: 131993 gaatcccctggagctca-actcccctgagactcaaagcagataggaggcaccaagacaga 131935

                                                                          
Query: 260    actccgtcacatcggcatcatatagattccaaagatatccgcgtgatcctnnnnnnnttt 319
              |||| |||||||||||||||||||||||||||| ||||||||||||||||        ||
Sbjct: 131934 actctgtcacatcggcatcatatagattccaaaaatatccgcgtgatcctaaaaaaaatt 131875

                                                                   
Query: 320    tgagtgagaagaggagtngaa-taaattattacgtnaagattcctcaccagag 371
              ||||||||||||||||| ||| |||||||||| || |||| ||||||||||||
Sbjct: 131874 tgagtgagaagaggagtagaattaaattattatgtcaagaatcctcaccagag 131822



 Score =  406 bits (205), Expect = e-110
 Identities = 317/353 (89%), Gaps = 4/353 (1%)
 Strand = Plus / Minus

                                                                          
Query: 20     accttcatctacaatagtaccctggtggatcacaacgatacaaagtctggcagtactcac 79
              |||||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||| |
Sbjct: 327776 accttcatctacaacag-accctcgtg-atcacaacgatacaaagtatggcagtactccc 327719

                                                                          
Query: 80     gaacaatctgcaccagtactggggacatcggggttatctcgccactactagtattgaagc 139
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327718 gaacaatctgcaccagtactggggacatcggggttatctcgccactactagtattgaagc 327659

                                                                          
Query: 140    aattacgaacatccttcgtcctgagatattaagaaatctgaatgataacgatgtgctcaa 199
              ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 327658 aattacgaacatccttcgttctgagatactaagaaatctgaatgataacgatgtgctcaa 327599

                                                                          
Query: 200    gaatccactggagctcagnnggggntgagacttagagcagataggaggcaccaagacaga 259
              ||||||  |||||||||        ||| ||| |||||||||||||||||||||||||||
Sbjct: 327598 gaatcccgtggagctca-actcccttgaaactcagagcagataggaggcaccaagacaga 327540

                                                                          
Query: 260    actccgtcacatcggcatcatatagattccaaagatatccgcgtgatcctnnnnnnnttt 319
              |||||||||||||||||||||||||||   ||| ||||||||||||||||       |||
Sbjct: 327539 actccgtcacatcggcatcatatagatctaaaaaatatccgcgtgatcctaaattttttt 327480

                                                                   
Query: 320    tgagtgagaagaggagtngaa-taaattattacgtnaagattcctcaccagag 371
              |||||| |||||||||| ||| ||||||||||| | |||||||||||||||||
Sbjct: 327479 tgagtgggaagaggagtagaattaaattattacatcaagattcctcaccagag 327427



 Score =  210 bits (106), Expect = 2e-51
 Identities = 224/263 (85%), Gaps = 1/263 (0%)
 Strand = Plus / Plus

                                                                          
Query: 47     gatcacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggaca 106
              |||||||||||||| |||| ||| ||||| | |||||||||| |||||||||||||||||
Sbjct: 158188 gatcacaacgataccaagtgtggtagtacccccgaacaatctacaccagtactggggaca 158247

                                                                          
Query: 107    tcggggttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagat 166
              ||||| ||||||| ||||||| |||||||||||||| ||||||| ||| ||| || ||||
Sbjct: 158248 tcgggattatctcaccactaccagtattgaagcaataacgaacaccctccgttcttagat 158307

                                                                          
Query: 167    attaagaaatctgaatgataacgatgtgctcaagaatccactggagctcagnnggggntg 226
              | | |||||||||||||||  |||||||| |  |||||| ||||||||||        ||
Sbjct: 158308 actcagaaatctgaatgatggcgatgtgcgcgggaatcccctggagctca-actcccctg 158366

                                                                          
Query: 227    agacttagagcagataggaggcaccaagacagaactccgtcacatcggcatcatatagat 286
              |||||||||| ||||||||||||||||||||| | ||||||||||||  |||||||||| 
Sbjct: 158367 agacttagagaagataggaggcaccaagacaggattccgtcacatcgaaatcatatagac 158426

                                     
Query: 287    tccaaagatatccgcgtgatcct 309
              |||| | ||| ||||||||||||
Sbjct: 158427 tccacaaatacccgcgtgatcct 158449



 Score =  196 bits (99), Expect = 4e-47
 Identities = 224/264 (84%), Gaps = 2/264 (0%)
 Strand = Plus / Plus

                                                                          
Query: 47     gatcacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggaca 106
              |||||||||||||| |||| ||| ||||| | |||||||||| |||||||||||||||||
Sbjct: 181247 gatcacaacgataccaagtgtggtagtacccccgaacaatctacaccagtactggggaca 181306

                                                                          
Query: 107    tcggggttatctcgccact-actagtattgaagcaattacgaacatccttcgtcctgaga 165
              ||||||||||||| ||| | || |||||||||||||| ||||||| ||| ||| || |||
Sbjct: 181307 tcggggttatctcaccaataacaagtattgaagcaataacgaacaccctccgttcttaga 181366

                                                                          
Query: 166    tattaagaaatctgaatgataacgatgtgctcaagaatccactggagctcagnnggggnt 225
              || | ||||||||||||||| ||||||||| |  |||||| ||||||||||        |
Sbjct: 181367 tactcagaaatctgaatgatgacgatgtgcgcgggaatcccctggagctca-actcccct 181425

                                                                          
Query: 226    gagacttagagcagataggaggcaccaagacagaactccgtcacatcggcatcatataga 285
              ||||||||||| ||||||||||||||||||||| | ||||||||||||  ||||||||||
Sbjct: 181426 gagacttagagaagataggaggcaccaagacaggattccgtcacatcgaaatcatataga 181485

                                      
Query: 286    ttccaaagatatccgcgtgatcct 309
               |||| | ||| |||| |||||||
Sbjct: 181486 ctccacaaatacccgcatgatcct 181509



 Score =  159 bits (80), Expect = 8e-36
 Identities = 202/241 (83%), Gaps = 2/241 (0%)
 Strand = Plus / Minus

                                                                         
Query: 47    gatcacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggaca 106
             ||||||||||||||||||| ||| ||||| | |||||||||| |||||||||||||||| 
Sbjct: 64690 gatcacaacgatacaaagtgtggtagtacccccgaacaatctacaccagtactggggacg 64631

                                                                         
Query: 107   tcggggttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagat 166
             ||||||||||||| |||||||  ||||||||||||| ||||||| ||| ||| || || |
Sbjct: 64630 tcggggttatctcaccactacccgtattgaagcaataacgaacaccctccgttcttaggt 64571

                                                                         
Query: 167   attaagaaatctgaatgataacgatgtgctcaagaatccactggagctcagnnggggntg 226
             | | ||||||| |||||||  |||||||| | | ||||| ||||||||||        ||
Sbjct: 64570 actcagaaatccgaatgatggcgatgtgcgcgataatcc-ctggagctca-actcccctg 64513

                                                                         
Query: 227   agacttagagcagataggaggcaccaagacagaactccgtcacatcggcatcatatagat 286
             | |||||||||||||||||||||||| ||||  | ||||||||||||  |||||||||||
Sbjct: 64512 atacttagagcagataggaggcaccaggacacgattccgtcacatcgaaatcatatagat 64453

              
Query: 287   t 287
             |
Sbjct: 64452 t 64452

>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  280 bits (141), Expect = 3e-72
 Identities = 185/197 (93%), Gaps = 2/197 (1%)
 Strand = Plus / Minus

                                                                        
Query: 20   accttcatctacaatagtaccctggtggatcacaacgatacaaagtctggcagtactcac 79
            |||||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||| |
Sbjct: 4810 accttcatctacaacag-acccttgtg-atcacaacgatacaaagtatggcagtactccc 4753

                                                                        
Query: 80   gaacaatctgcaccagtactggggacatcggggttatctcgccactactagtattgaagc 139
            |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct: 4752 gaacaatctgcaccagtactcggggcatcggggttatctcaccactactagtattgaagc 4693

                                                                        
Query: 140  aattacgaacatccttcgtcctgagatattaagaaatctgaatgataacgatgtgctcaa 199
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 4692 aattacgaacatccttcgttctgagatactaagaaatctgaatgataacgatgtgctcaa 4633

                             
Query: 200  gaatccactggagctca 216
            |||||| ||||||||||
Sbjct: 4632 gaatcccctggagctca 4616



 Score =  172 bits (87), Expect = 5e-40
 Identities = 124/138 (89%), Gaps = 1/138 (0%)
 Strand = Plus / Minus

                                                                        
Query: 235  agcagataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaaga 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 agcagataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaaga 4539

                                                                        
Query: 295  tatccgcgtgatcctnnnnnnnttttgagtgagaagaggagtngaa-taaattattacgt 353
            ||||| |||||||||       |||||||||  ||||||||| ||| |||||||||||||
Sbjct: 4538 tatccacgtgatcctaaaaaaattttgagtgcaaagaggagtagaattaaattattacgt 4479

                              
Query: 354  naagattcctcaccagag 371
             |||||||||||| ||||
Sbjct: 4478 caagattcctcacgagag 4461

>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
            and complete sequences
          Length = 11820

 Score =  280 bits (141), Expect = 3e-72
 Identities = 185/197 (93%), Gaps = 2/197 (1%)
 Strand = Plus / Minus

                                                                        
Query: 20   accttcatctacaatagtaccctggtggatcacaacgatacaaagtctggcagtactcac 79
            |||||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||| |
Sbjct: 4810 accttcatctacaacag-accctcgtg-atcacaacgatacaaagtatggcagtactccc 4753

                                                                        
Query: 80   gaacaatctgcaccagtactggggacatcggggttatctcgccactactagtattgaagc 139
            |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct: 4752 gaacaatctgcaccagtactcggggcatcggggttatctcaccactactagtattgaagc 4693

                                                                        
Query: 140  aattacgaacatccttcgtcctgagatattaagaaatctgaatgataacgatgtgctcaa 199
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 4692 aattacgaacatccttcgttctgagatactaagaaatctgaatgataacgatgtgctcaa 4633

                             
Query: 200  gaatccactggagctca 216
            |||||| ||||||||||
Sbjct: 4632 gaatcccctggagctca 4616



 Score =  172 bits (87), Expect = 5e-40
 Identities = 124/138 (89%), Gaps = 1/138 (0%)
 Strand = Plus / Minus

                                                                        
Query: 235  agcagataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaaga 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 agcagataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaaga 4539

                                                                        
Query: 295  tatccgcgtgatcctnnnnnnnttttgagtgagaagaggagtngaa-taaattattacgt 353
            ||||| |||||||||       |||||||||  ||||||||| ||| |||||||||||||
Sbjct: 4538 tatccacgtgatcctaaaaaaattttgagtgcaaagaggagtagaattaaattattacgt 4479

                              
Query: 354  naagattcctcaccagag 371
             |||||||||||| ||||
Sbjct: 4478 caagattcctcacgagag 4461

>gb|AY054381.1| Hordeum vulgare clone INS2 Sukkula retrotransposon, partial
           sequence
          Length = 3185

 Score =  266 bits (134), Expect = 5e-68
 Identities = 158/166 (95%)
 Strand = Plus / Minus

                                                                       
Query: 47  gatcacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggaca 106
           ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 457 gatcacaacgatacaaagtatggcaatactcccgaacaatctgcaccagtactggggaca 398

                                                                       
Query: 107 tcggggttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagat 166
           |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 397 tcggggctatctcgccactactagtattgaagcaattacgaacatccttcattctgagat 338

                                                         
Query: 167 attaagaaatctgaatgataacgatgtgctcaagaatccactggag 212
           | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 337 actaagaaatctgaatgataacgatgtgctcaagaatcccctggag 292



 Score =  147 bits (74), Expect = 3e-32
 Identities = 121/137 (88%), Gaps = 2/137 (1%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcagataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagat 295
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||
Sbjct: 269 gcagataggaggcaccaagacagaactccatcacatcggcatcatatagattccaagaat 210

                                                                       
Query: 296 atccgcgtgatcctnnnnnnnttttgagtgagaagaggagtngaa-taaattattacgtn 354
           ||| ||||||||||         |||||||||||||||||| ||| ||||||||||||| 
Sbjct: 209 atctgcgtgatcctaaaaaaa-attgagtgagaagaggagtagaattaaattattacgtc 151

                            
Query: 355 aagattcctcaccagag 371
           |||||||||||||||||
Sbjct: 150 aagattcctcaccagag 134

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  194 bits (98), Expect = 1e-46
 Identities = 153/170 (90%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                          
Query: 47     gatcacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggaca 106
              |||||||||||||| | || ||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 110040 gatcacaacgatacca-gtgtggtagtacccccgaacaatctgcaccagtactggggaca 110098

                                                                          
Query: 107    tcggggttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagat 166
              ||||||||||||| ||||||| |||||||||||||| ||||||||||||||| || ||||
Sbjct: 110099 tcggggttatctcaccactaccagtattgaagcaataacgaacatccttcgttcttagat 110158

                                                                
Query: 167    attaagaaatctgaatgataacgatgtgctcaagaatccactggagctca 216
              | | |||||||||||||||  |||||||| ||||||||| ||||||||||
Sbjct: 110159 actcagaaatctgaatgatggcgatgtgcgcaagaatcccctggagctca 110208



 Score =  194 bits (98), Expect = 1e-46
 Identities = 153/170 (90%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                         
Query: 47    gatcacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggaca 106
             |||||||||||||| | || ||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 70325 gatcacaacgatacca-gtgtggtagtacccccgaacaatctgcaccagtactggggaca 70383

                                                                         
Query: 107   tcggggttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagat 166
             ||||||||||||| ||||||| |||||||||||||| ||||||||||||||| || ||||
Sbjct: 70384 tcggggttatctcaccactaccagtattgaagcaataacgaacatccttcgttcttagat 70443

                                                               
Query: 167   attaagaaatctgaatgataacgatgtgctcaagaatccactggagctca 216
             | | |||||||||||||||  |||||||| ||||||||| ||||||||||
Sbjct: 70444 actcagaaatctgaatgatggcgatgtgcgcaagaatcccctggagctca 70493

>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  188 bits (95), Expect = 9e-45
 Identities = 179/198 (90%), Gaps = 8/198 (4%)
 Strand = Plus / Minus

                                                                        
Query: 20   accttcatctacaatagtaccctggtggatcacaacgatacaaagtctggcagtactcac 79
            |||||||||||||| || ||||| ||| |||||||||||||||||| ||||||||| | |
Sbjct: 4788 accttcatctacaacag-acccttgtg-atcacaacgatacaaagtatggcagtaccc-c 4732

                                                                        
Query: 80   gaacaatctgcaccagtactggg-gacatcggggttatctcgccactactagtattgaag 138
            |||||| |||| |||||||| || | ||||||||||||||| ||||||||||||||||||
Sbjct: 4731 gaacaa-ctgc-ccagtactcggtggcatcggggttatctcaccactactagtattgaag 4674

                                                                        
Query: 139  caattacgaacatccttcgtcctgagatattaagaaatctgaatgataacgatgtgctca 198
            ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||  ||
Sbjct: 4673 caatttcgaacatcctccgtcctgagatactaagaaatctgaatgataacgatgtg--ca 4616

                              
Query: 199  agaatccactggagctca 216
            ||||||| ||||||||||
Sbjct: 4615 agaatcccctggagctca 4598



 Score =  107 bits (54), Expect = 3e-20
 Identities = 113/132 (85%), Gaps = 4/132 (3%)
 Strand = Plus / Minus

                                                                        
Query: 242  aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
            ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |
Sbjct: 4584 aggaggcaccaagacagaactccttcacatcggcatcatatagtttccaaa-atatccac 4526

                                                                        
Query: 302  gtgatcctnnnnnnnttttgagtgagaagaggagtngaat--aaattattacgtnaagat 359
            ||||||||       |||||||||  ||||||||| ||||  |||||||||||| || ||
Sbjct: 4525 gtgatcctaaaaaaattttgagtgcaaagaggagtagaattaaaattattacgtcaa-at 4467

                        
Query: 360  tcctcaccagag 371
            ||||||| ||||
Sbjct: 4466 tcctcacgagag 4455

>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial
           sequence
          Length = 3613

 Score =  119 bits (60), Expect = 7e-24
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                       
Query: 116 tctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaagaaa 175
           |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||
Sbjct: 645 tctcgccactactagtattgaagcaatttcgaacatcctccgtcctgagatactaaggaa 586

                               
Query: 176 tctgaatgataacgatgtgc 195
            |||||||||||||||||||
Sbjct: 585 actgaatgataacgatgtgc 566



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           ||||||||||||||||||| ||| ||||||||||||||||||| |||||||  || ||||
Sbjct: 533 aggaggcaccaagacagaattccttcacatcggcatcatatagtttccaaa-ttacccgc 475

                   
Query: 302 gtgatcct 309
           ||||||||
Sbjct: 474 gtgatcct 467

>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial
           sequence
          Length = 3622

 Score =  117 bits (59), Expect = 3e-23
 Identities = 140/166 (84%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                       
Query: 50  cacaacgatacaaagtctggcagtactcacgaacaatctgcaccagtactggggacatcg 109
           ||||||||||| |||  |||||||||   |||||  ||| |||||||||||||||   ||
Sbjct: 711 cacaacgatactaagaatggcagtacatccgaactctctccaccagtactggggatgccg 652

                                                                       
Query: 110 gggttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatatt 169
           |  |  |||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
Sbjct: 651 gactcctctcgccactaccagtattgaagcaatttcgaacatcctccgtcctgagatact 592

                                                         
Query: 170 aagaaatctgaatgataacgatgtgctcaagaatccactggagctc 215
           ||| || ||||| ||||||||||||  ||||||||| |||||||||
Sbjct: 591 aaggaaactgaacgataacgatgtg--caagaatcccctggagctc 548



 Score =  103 bits (52), Expect = 4e-19
 Identities = 65/68 (95%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 533 aggaggcaccaagacagaactccgtcacatcggcatcatatagtttccaaa-atacccgc 475

                   
Query: 302 gtgatcct 309
           ||||||||
Sbjct: 474 gtgatcct 467

>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon,
           partial sequence
          Length = 3434

 Score =  111 bits (56), Expect = 2e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                       
Query: 116 tctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaagaaa 175
           |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||
Sbjct: 642 tctcgccactactagtattgaagcaatttcgaacatcctccgtcctgagatactaaggaa 583

                               
Query: 176 tctgaatgataacgatgtgc 195
            ||||||||||| |||||||
Sbjct: 582 actgaatgataatgatgtgc 563



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 86/102 (84%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                       
Query: 240 ataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatcc 299
           |||||||||| ||| |||||| ||| ||||||||||||||||||| ||||||| ||| | 
Sbjct: 532 ataggaggcaacaatacagaattccttcacatcggcatcatatagtttccaaa-atacct 474

                                                     
Query: 300 gcgtgatcctnnnnnnnttttgagtgagaagaggagtngaat 341
           ||||||||||       |||||||||||||||||||| ||||
Sbjct: 473 gcgtgatcctaaaaaaattttgagtgagaagaggagtagaat 432

>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial
           sequence
          Length = 3774

 Score =  111 bits (56), Expect = 2e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                       
Query: 116 tctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaagaaa 175
           |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||
Sbjct: 644 tctcgccactactagtattgaagcaatttcgaacatcctccgtcctgagatactaaggaa 585

                               
Query: 176 tctgaatgataacgatgtgc 195
            ||||||||||| |||||||
Sbjct: 584 actgaatgataatgatgtgc 565



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 85/100 (85%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           |||||||||||| |||||| ||| ||||||||||||||||||| ||||||| ||| ||||
Sbjct: 532 aggaggcaccaatacagaattccttcacatcggcatcatatagtttccaaa-atacccgc 474

                                                   
Query: 302 gtgatcctnnnnnnnttttgagtgagaagaggagtngaat 341
           ||||||||        ||||||||||||||||||| ||||
Sbjct: 473 gtgatcctaaaaaaaatttgagtgagaagaggagtagaat 434

>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial
           sequence
          Length = 3862

 Score =  109 bits (55), Expect = 6e-21
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                       
Query: 113 ttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaag 172
           |||||||||||| |  ||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct: 646 ttatctcgccacgataagtattgaagcaatttcgaacatcctccgtcctgagatactaag 587

                                  
Query: 173 aaatctgaatgataacgatgtgc 195
           ||| |||||||||||||||||||
Sbjct: 586 aaaactgaatgataacgatgtgc 564



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||
Sbjct: 531 aggaggcaccaagacagaattccttcacatcggcatcatatagtttccaaa-atacccgc 473

                   
Query: 302 gtgatcct 309
           ||||||||
Sbjct: 472 gtgatcct 465

>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula,
           complete sequence
          Length = 3695

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 79/88 (89%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                       
Query: 129 agtattgaagcaattacgaacatccttcgtcctgagatattaagaaatctgaatgataac 188
           ||||||||||||||| |||||||||| | |||||||||| |||| || ||||||||||||
Sbjct: 635 agtattgaagcaatttcgaacatcctccatcctgagatactaaggaaactgaatgataac 576

                                       
Query: 189 gatgtgctcaagaatccactggagctca 216
           |||||| |||| ||||| ||||||||||
Sbjct: 575 gatgtg-tcaacaatcccctggagctca 549



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 64/68 (94%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           |||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 532 aggaggcaccaagatagaactccgtcacatcggtatcatatagataccaaa-atatccgc 474

                   
Query: 302 gtgatcct 309
           ||||||||
Sbjct: 473 gtgatcct 466

>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial
           sequence
          Length = 3698

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 113 ttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaag 172
           |||||||||||| |  ||||||||||||||| |||||||||| ||||||||||||  |||
Sbjct: 649 ttatctcgccacgaaaagtattgaagcaatttcgaacatcctccgtcctgagatacaaag 590

                                  
Query: 173 aaatctgaatgataacgatgtgc 195
            || |||||||||||||||||||
Sbjct: 589 gaaactgaatgataacgatgtgc 567



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%), Gaps = 2/101 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaag-acagaactccgtcacatcggcatcatatagattccaaagatatccg 300
           ||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||| |||
Sbjct: 534 aggaggcaccaagtacagaactccttcacatcggcatcatatagtttccaaa-atacccg 476

                                                    
Query: 301 cgtgatcctnnnnnnnttttgagtgagaagaggagtngaat 341
           |||||||||       ||||||| |||||||||||| ||||
Sbjct: 475 cgtgatcctaaaaattttttgagcgagaagaggagtagaat 435

>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                        
Query: 129  agtattgaagcaattacgaacatccttcgtcctgagatattaagaaatctgaatgataac 188
            ||||||||||||||| |||||||||| |||||||||||| |||| || |||||  |||||
Sbjct: 4794 agtattgaagcaatttcgaacatcctccgtcctgagatactaaggaaactgaacaataac 4735

                                       
Query: 189  gatgtgctcaagaatccactggagctc 215
            |||||| |||||||||| |||||||||
Sbjct: 4734 gatgtg-tcaagaatcccctggagctc 4709



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 63/69 (91%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                        
Query: 242  aggaggcaccaag-acagaactccgtcacatcggcatcatatagattccaaagatatccg 300
            ||||||||||||| | |||||||| ||||||||||||||||||| ||||||| ||| |||
Sbjct: 4694 aggaggcaccaagtatagaactccatcacatcggcatcatatagtttccaaa-atacccg 4636

                     
Query: 301  cgtgatcct 309
            |||||||||
Sbjct: 4635 cgtgatcct 4627

>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 113  ttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaag 172
            |||||||||||| |  ||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct: 4614 ttatctcgccacgataagtattgaagcaatttcgaacatcctccgtcctgagatactaag 4555

                                   
Query: 173  aaatctgaatgataacgatgtgc 195
             || ||||| |||||||||||||
Sbjct: 4554 gaaactgaacgataacgatgtgc 4532



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 90/104 (86%), Gaps = 4/104 (3%)
 Strand = Plus / Minus

                                                                        
Query: 242  aggaggcaccaag-acagaactccgtcacatcggcatcatatagattccaaagatatccg 300
            ||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||| |||
Sbjct: 4499 aggaggcaccaagtacagaactccttcacatcggcatcatatagtttccaaa-atacccg 4441

                                                        
Query: 301  cgtgatcctnnnnnnnttttgagtgagaagaggagtngaataaa 344
            | |||||||       |||||||||||||||||||| |||||||
Sbjct: 4440 catgatcct--aaaaattttgagtgagaagaggagtagaataaa 4399

>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial
           sequence
          Length = 3804

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||
Sbjct: 532 aggaggcaccaagacagaattccttcacatcggcatcatatagtttccaaa-atacccgc 474

                   
Query: 302 gtgatcct 309
           ||||||||
Sbjct: 473 gtgatcct 466



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 129 agtattgaagcaattacgaacatccttcgtcctgagatattaagaaatctgaatgataac 188
           ||||||||||||||| |||||||||| |||||||||||| |||  || ||||||||||||
Sbjct: 631 agtattgaagcaatttcgaacatcctccgtcctgagatactaaataaactgaatgataac 572

                  
Query: 189 gatgtgc 195
            ||||||
Sbjct: 571 aatgtgc 565

>gb|AF453661.1| Hordeum patagonicum isolate HPA Sukkula retrotransposon, partial
           sequence
          Length = 3319

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/87 (88%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                       
Query: 129 agtattgaagcaattacgaacatccttcgtcctgagatattaagaaatctgaatgataac 188
           ||||||||||||||| |||||||||| |||||||||||| |||| || |||||  |||||
Sbjct: 390 agtattgaagcaatttcgaacatcctccgtcctgagatactaaggaaactgaacaataac 331

                                      
Query: 189 gatgtgctcaagaatccactggagctc 215
           ||||||  ||||||||| |||||||||
Sbjct: 330 gatgtg--caagaatcccctggagctc 306



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%), Gaps = 2/101 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaag-acagaactccgtcacatcggcatcatatagattccaaagatatccg 300
           ||||||||||||| | |||||||| ||||||||||||||||||| ||||||| ||| |||
Sbjct: 291 aggaggcaccaagtatagaactccatcacatcggcatcatatagtttccaaa-atacccg 233

                                                    
Query: 301 cgtgatcctnnnnnnnttttgagtgagaagaggagtngaat 341
           |||||||||       ||||||| |||||||||||| ||||
Sbjct: 232 cgtgatcctaaaaattttttgagcgagaagaggagtagaat 192

>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial
           sequence
          Length = 3943

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 113 ttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaag 172
           |||||||||||| |  ||||||||||||||| |||||||||| ||||||||||||  |||
Sbjct: 647 ttatctcgccacgataagtattgaagcaatttcgaacatcctccgtcctgagatacaaag 588

                                  
Query: 173 aaatctgaatgataacgatgtgc 195
            || ||||| |||||||||||||
Sbjct: 587 gaaactgaacgataacgatgtgc 565



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 64/69 (92%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaag-acagaactccgtcacatcggcatcatatagattccaaagatatccg 300
           ||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||| |||
Sbjct: 532 aggaggcaccaagtacagaactccttcacatcggcatcatatagtttccaaa-atacccg 474

                    
Query: 301 cgtgatcct 309
           |||||||||
Sbjct: 473 cgtgatcct 465

>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 113  ttatctcgccactactagtattgaagcaattacgaacatccttcgtcctgagatattaag 172
            |||||||||||| |  |||||||||| |||| | ||||| || ||||||||||||| |||
Sbjct: 4931 ttatctcgccacgataagtattgaagtaatttcaaacattctccgtcctgagatatcaag 4872

                                   
Query: 173  aaatctgaatgataacgatgtgc 195
            ||| |||||||||||||||||||
Sbjct: 4871 aaaactgaatgataacgatgtgc 4849



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 88/105 (83%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                        
Query: 237  cagataggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagata 296
            |||| |||||||||||||||||||| |  |||||| |||||||||||| ||||| | |||
Sbjct: 4808 cagacaggaggcaccaagacagaaccctatcacattggcatcatatagtttccaca-ata 4750

                                                         
Query: 297  tccgcgtgatcctnnnnnnnttttgagtgagaagaggagtngaat 341
            |||||||||||||        ||||||||||||||||||| ||||
Sbjct: 4749 tccgcgtgatcctaaaaaaaatttgagtgagaagaggagtagaat 4705

>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula,
           complete sequence
          Length = 3683

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 129 agtattgaagcaattacgaacatccttcgtcctgagatattaagaaatctgaatgataac 188
           ||||||||||||||| |||||||||| ||||||||||||  |||||| ||||| ||||||
Sbjct: 630 agtattgaagcaatttcgaacatcctccgtcctgagatacaaagaaaactgaacgataac 571

                  
Query: 189 gatgtgc 195
           |||||||
Sbjct: 570 gatgtgc 564



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 62/71 (87%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                       
Query: 240 ataggaggcaccaag-acagaactccgtcacatcggcatcatatagattccaaagatatc 298
           ||||||||||||||| ||| || ||| |||||||| |||||||||| ||| ||| ||| |
Sbjct: 533 ataggaggcaccaagtacataattccttcacatcgacatcatatagtttctaaa-atacc 475

                      
Query: 299 cgcgtgatcct 309
           |||||||||||
Sbjct: 474 cgcgtgatcct 464

>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial
           sequence
          Length = 3764

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 242 aggaggcaccaagacagaactccgtcacatcggcatcatatagattccaaagatatccgc 301
           ||||||||||||||||||| ||| |||||| |||||||||||| ||||||| ||| ||||
Sbjct: 532 aggaggcaccaagacagaattccttcacattggcatcatatagtttccaaa-atacccgc 474

                   
Query: 302 gtgatcct 309
           ||||||||
Sbjct: 473 gtgatcct 466



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                       
Query: 129 agtattgaagcaattacgaacatccttcgtcctgagatattaagaaatctgaatgataac 188
           ||||||||||||||| |||||||||| |||||| |||||  ||| ||  |||||||||||
Sbjct: 631 agtattgaagcaatttcgaacatcctccgtcctcagatacaaaggaaattgaatgataac 572

                  
Query: 189 gatgtgc 195
           |||||||
Sbjct: 571 gatgtgc 565

>gb|AF028258.1|AF028258 Hordeum chilense RAPD marker IAS-pHc5-1
          Length = 701

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 113 ttatctcgccactactagtattgaagcaattacgaacatccttcgtcc 160
           |||||||||||| |  |||||||||||||||  ||||||||| |||||
Sbjct: 51  ttatctcgccacgaaaagtattgaagcaattttgaacatcctccgtcc 4

>gb|AF453673.1| Secale cereale isolate sc5 Sukkula retrotransposon, partial
           sequence
          Length = 2669

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 349 tacgtnaagattcctcaccagag 371
           ||||| |||||||||||||||||
Sbjct: 191 tacgtcaagattcctcaccagag 169

>gb|AF453671.1| Secale cereale isolate sc4 Sukkula retrotransposon, partial
           sequence
          Length = 2667

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 349 tacgtnaagattcctcaccagag 371
           ||||| |||||||||||||||||
Sbjct: 191 tacgtcaagattcctcaccagag 169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,209,069
Number of Sequences: 3902068
Number of extensions: 2209069
Number of successful extensions: 31791
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31687
Number of HSP's gapped (non-prelim): 85
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)