ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCD72_XENTR (Q28GR1) Coiled-coil domain-containing protein 72 37 0.009
2CCD72_MOUSE (Q8K003) Coiled-coil domain-containing protein 72 34 0.076
3CCD72_HUMAN (Q9Y2S6) Coiled-coil domain-containing protein 72 34 0.076
4GSTT2_DROME (Q9VG98) Glutathione S-transferase D2 (EC 2.5.1.18) ... 33 0.17
5GSTT5_DROME (Q9VG95) Glutathione S-transferase D5 (EC 2.5.1.18) ... 30 1.4
6Y022_THEAC (Q9HM47) UPF0204 protein Ta0022 28 4.2
7COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemph... 28 4.2
8YSO2_CAEEL (Q10128) Hypothetical protein F56D1.2 precursor 28 5.5
9CI010_HUMAN (Q9NZB2) Protein C9orf10 28 5.5
10CCRK_RAT (Q4KM34) Cell cycle-related kinase (EC 2.7.11.22) 28 7.2
11CCRK_MOUSE (Q9JHU3) Cell cycle-related kinase (EC 2.7.11.22) (Cy... 28 7.2
12GSTT4_DROME (Q9VG96) Glutathione S-transferase D4 (EC 2.5.1.18) ... 27 9.3

>CCD72_XENTR (Q28GR1) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 351 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 268
           ++GGK KPLKQ K + KD DE+++A+ Q
Sbjct: 4   REGGKKKPLKQPKKSNKDMDEDEIAFKQ 31



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>CCD72_MOUSE (Q8K003) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 351 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 268
           ++GGK KPLKQ K   K+ DE D A+ Q
Sbjct: 4   REGGKKKPLKQPKKQAKEMDEEDKAFKQ 31



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>CCD72_HUMAN (Q9Y2S6) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 351 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 268
           ++GGK KPLKQ K   K+ DE D A+ Q
Sbjct: 4   REGGKKKPLKQPKKQAKEMDEEDKAFKQ 31



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>GSTT2_DROME (Q9VG98) Glutathione S-transferase D2 (EC 2.5.1.18) (DmGST21)|
          Length = 215

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +3

Query: 54  MLNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHP 212
           +LNT EG  L+P+ VK +    I  L  +G   W  R     L+  +   D +LP  P
Sbjct: 30  LLNTMEGEQLKPEFVKLNPQHTIPTLVDNGFSIWESRAIAVYLVEKYGKDDYLLPNDP 87



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>GSTT5_DROME (Q9VG95) Glutathione S-transferase D5 (EC 2.5.1.18) (DmGST24)|
          Length = 216

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +3

Query: 54  MLNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHPSG 218
           +LNT E   L+P+ VK +    I  L  +G   W  R     L+  +   D + P  P  
Sbjct: 30  LLNTLEKDQLKPEFVKLNPQHTIPTLVDNGFSIWESRAIAVYLVEKYGKDDTLFPKDPKK 89

Query: 219 Q 221
           Q
Sbjct: 90  Q 90



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>Y022_THEAC (Q9HM47) UPF0204 protein Ta0022|
          Length = 256

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 129 LSFSGHYEWAGRLISSHSSSDQI--LPAHPSGQPWPSAPSG 245
           +S SG Y++   ++S HSS+  +  L AHP+G   PSA  G
Sbjct: 52  MSLSGKYDYLV-VLSRHSSAADVKSLTAHPTGNFGPSADLG 91



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>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 GRLISSHSSSDQILPAHPSGQPWPSAPSGP 248
           G++IS+  SS   LP  P G P P  P+GP
Sbjct: 389 GKVISAEGSSTIALPG-PPGPPGPIGPTGP 417



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>YSO2_CAEEL (Q10128) Hypothetical protein F56D1.2 precursor|
          Length = 718

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 23  RFQQPTATMHNAQHN*R*SVTTTDSEARHR*VDR*IIIFWALRMGRQTHFF 175
           +F Q TA +HN +H  R +VT   SEA+        I  W L   R   FF
Sbjct: 558 QFAQLTAFLHNVEHTERANVTQNISEAQ--------IHEWNLCASRMMSFF 600



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>CI010_HUMAN (Q9NZB2) Protein C9orf10|
          Length = 1069

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 146 LRMGRQTHFFPLFFRPDPPSAPFWPALA 229
           L   RQ+H  P    P PP+ PF+PA A
Sbjct: 846 LSFSRQSHTLPF---PPPPALPFYPASA 870



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>CCRK_RAT (Q4KM34) Cell cycle-related kinase (EC 2.7.11.22)|
          Length = 346

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 198 LPAHPSGQPWPSAPSGP 248
           LPAHPS  P P  P GP
Sbjct: 293 LPAHPSELPIPQRPGGP 309



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>CCRK_MOUSE (Q9JHU3) Cell cycle-related kinase (EC 2.7.11.22)|
           (Cyclin-kinase-activating kinase p42) (CDK-activating
           kinase p42) (CAK-kinase p42) (CDK-related protein kinase
           PNQLARE)
          Length = 346

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 198 LPAHPSGQPWPSAPSGP 248
           LPAHPS  P P  P GP
Sbjct: 293 LPAHPSELPIPQRPGGP 309



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>GSTT4_DROME (Q9VG96) Glutathione S-transferase D4 (EC 2.5.1.18) (DmGST23)|
          Length = 215

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +3

Query: 57  LNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHP 212
           L  TEG  L+P+ +K +    I  L  +G   W  R     L+  +   D + P  P
Sbjct: 31  LRITEGEHLKPEFLKLNPQHTIPTLVDNGFAIWESRAIAVYLVEKYGKDDSLFPNDP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,410,368
Number of Sequences: 219361
Number of extensions: 617899
Number of successful extensions: 2229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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