| Clone Name | rbags39m23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X79466.1|HVES2A H.vulgare (Dbg 567) ES2A mRNA Length = 793 Score = 1294 bits (653), Expect = 0.0 Identities = 653/653 (100%) Strand = Plus / Minus Query: 1 tcggtcgcatacatcaaacaaagttacaccaaggagcgtgtgtataaattaattagttcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 762 tcggtcgcatacatcaaacaaagttacaccaaggagcgtgtgtataaattaattagttcc 703 Query: 61 ttggaactgaaatttaaattatatcgagagaacaacgaaacggaaggagggaaagagcag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 ttggaactgaaatttaaattatatcgagagaacaacgaaacggaaggagggaaagagcag 643 Query: 121 gcaggcgcagacgcgtctaattatcctttgtgatcttcttggtggcaccatcaacatctc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 gcaggcgcagacgcgtctaattatcctttgtgatcttcttggtggcaccatcaacatctc 583 Query: 181 acttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 acttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcac 523 Query: 241 ccacaatattcccgccggccttctggaagacgttttccttgggggcgaccggggtatcct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 ccacaatattcccgccggccttctggaagacgttttccttgggggcgaccggggtatcct 463 Query: 301 tggtgtactctgcagcggtgtcctggacatgctgcgcggcctcggtggacttctccttgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 tggtgtactctgcagcggtgtcctggacatgctgcgcggcctcggtggacttctccttgg 403 Query: 361 cggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 cggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagc 343 Query: 421 tggccgtctggtctttgccctcgacggcgcgatcctgaccggcttgcaccgtctcggaca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 tggccgtctggtctttgccctcgacggcgcgatcctgaccggcttgcaccgtctcggaca 283 Query: 481 ccttccccatggcctcgccgcccatctttttggccgcctcggtagtctcggaggcagact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 ccttccccatggcctcgccgcccatctttttggccgcctcggtagtctcggaggcagact 223 Query: 541 tcgtgacagcctcgcttttctcgccaaggaagctgccggtctggtcttttgcctcgacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 222 tcgtgacagcctcgcttttctcgccaaggaagctgccggtctggtcttttgcctcgacgg 163 Query: 601 cacggtcctggatggactgccccgtctcggacgccatcttcgtggcctcgccg 653 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 162 cacggtcctggatggactgccccgtctcggacgccatcttcgtggcctcgccg 110
>emb|AJ000100.1|HVAJ100 Hordeum vulgare mRNA for cold-regulated protein, partial Length = 594 Score = 1043 bits (526), Expect = 0.0 Identities = 541/546 (99%) Strand = Plus / Minus Query: 1 tcggtcgcatacatcaaacaaagttacaccaaggagcgtgtgtataaattaattagttcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 tcggtcgcatacatcaaacaaagttacaccaaggagcgtgtgtataaattaattagttcc 487 Query: 61 ttggaactgaaatttaaattatatcgagagaacaacgaaacggaaggagggaaagagcag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 ttggaactgaaatttaaattatatcgagagaacaacgaaacggaaggagggaaagagcag 427 Query: 121 gcaggcgcagacgcgtctaattatcctttgtgatcttcttggtggcaccatcaacatctc 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 426 gcaggcgcagacgcgtctaattatcctttgtgatcttcttggtggcaccatcaactactc 367 Query: 181 acttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 acttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcac 307 Query: 241 ccacaatattcccgccggccttctggaagacgttttccttgggggcgaccggggtatcct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 ccacaatattcccgccggccttctggaagacgttttccttgggggcgaccggggtatcct 247 Query: 301 tggtgtactctgcagcggtgtcctggacatgctgcgcggcctcggtggacttctccttgg 360 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 246 tggtgtactctgcagcggtgtcctgaacatgctgcgcggcctcggtggacttctccttgg 187 Query: 361 cggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 cggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagc 127 Query: 421 tggccgtctggtctttgccctcgacggcgcgatcctgaccggcttgcaccgtctcggaca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 tggccgtctggtctttgccctcgacggcgcgatcctgaccggcttgcaccgtctcggaca 67 Query: 481 ccttccccatggcctcgccgcccatctttttggccgcctcggtagtctcggaggcagact 540 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 66 ccttccccatggcctcgctgcccatctttttggtcgcctcggtagtctcggaggcagact 7 Query: 541 tcgtga 546 |||||| Sbjct: 6 tcgtga 1 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtcttttgcctcgacggcacggtcctg 610 |||||||| || |||||| | ||||||||||| |||||||||| || ||||| Sbjct: 142 ttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcctg 90
>gb|AF255053.1|AF255053 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab17) mRNA, complete cds Length = 735 Score = 775 bits (391), Expect = 0.0 Identities = 588/653 (90%), Gaps = 8/653 (1%) Strand = Plus / Minus Query: 1 tcggtcgcatacatcaaacaaagttacaccaaggagcgtgtgtataaattaattagttcc 60 ||||||| |||||||| |||||||||||||||||||| |||||| |||||| || Sbjct: 708 tcggtcggatacatcatacaaagttacaccaaggagcatgtgta-------attagtgcc 656 Query: 61 ttggaactgaaatttaaattatatcgagagaacaacgaaacggaaggagggaaagagcag 120 |||||||| || ||||||||||| || ||| | |||||| ||||||||| || ||| Sbjct: 655 atggaactggaaattaaattatattgaaggaatagcgaaacagaaggagggctagggcaa 596 Query: 121 gcaggcgcagacgcgtctaattatcctttgtgatcttcttggtggcaccatcaacatctc 180 ||| ||||||||||| ||| |||||||||||| ||||||||||||||||| | |||||| Sbjct: 595 gcaagcgcagacgcgccta-ttatcctttgtggtcttcttggtggcaccacccgcatctc 537 Query: 181 acttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcac 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 536 acttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtctgtagcggcac 477 Query: 241 ccacaatattcccgccggccttctggaagacgttttccttgggggcgaccggggtatcct 300 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 476 ccaccatattcccgccggcctgctggaagacgttttccttgggggcgaccggggtatcct 417 Query: 301 tggtgtactctgcagcggtgtcctggacatgctgcgcggcctcggtggacttctccttgg 360 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 416 tggtgtactgtgcagcggtgtcctggacatgctgggcggcctcggtggacttctccttgg 357 Query: 361 cggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagc 420 ||| |||||||||||||||||||||||||| || || || ||||| |||||| ||||| Sbjct: 356 tggcatcggcagtctcggtggccgtcttcttgacagcgtcagtcttgtcgccgtaaaagc 297 Query: 421 tggccgtctggtctttgccctcgacggcgcgatcctgaccggcttgcaccgtctcggaca 480 || | | |||||||||||||||||||||| |||||| |||||||| ||||||||||||| Sbjct: 296 tgcctgcctggtctttgccctcgacggcgtgatccttaccggcttccaccgtctcggacg 237 Query: 481 ccttccccatggcctcgccgcccatctttttggccgcctcggtagtctcggaggcagact 540 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 236 ccttccccatggcctcgccgcccatctttttagccgcctcggtagtctcggaggcagcct 177 Query: 541 tcgtgacagcctcgcttttctcgccaaggaagctgccggtctggtcttttgcctcgacgg 600 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 176 tcgtgacagcctcgcttttctcaccaaggaaggccccggtctggtcttttgcctcgacgg 117 Query: 601 cacggtcctggatggactgccccgtctcggacgccatcttcgtggcctcgccg 653 | ||||| || |||| ||||||||||||||||||| |||| ||||| |||||| Sbjct: 116 cgcggtcttgaatggtctgccccgtctcggacgccgtcttggtggcgtcgccg 64
>gb|U73217.1|TAU73217 Triticum aestivum cold acclimation protein WCOR615 (Wcor615) mRNA, complete cds Length = 776 Score = 153 bits (77), Expect = 9e-34 Identities = 241/293 (82%), Gaps = 2/293 (0%) Strand = Plus / Minus Query: 336 gcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttcttcacg 395 |||||||||| |||||||| ||||||||||||| | || |||| |||| ||||||| || Sbjct: 384 gcggcctcggcggacttctgcttggcggcgtcgccggtgtcggcggccatcttcttggcg 325 Query: 396 gcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcc 455 ||||| |||||||| |||| |||| | ||||||||| |||| ||||| |||||| ||| Sbjct: 324 gcctcggtcttctcaccgaagaagccgaacgtctggtccttgctctcgatggcgcggtcc 265 Query: 456 -tgaccggcttgcaccgtctcggacaccttccccatggcctcgccgcccatctttttggc 514 ||| ||| ||| ||||||| ||| ||||||||||||| |||| |||||||| |||| Sbjct: 264 gtgat-ggcctgccccgtctctgacgccttccccatggcgtcgctccccatcttcatggc 206 Query: 515 cgcctcggtagtctcggaggcagacttcgtgacagcctcgcttttctcgccaaggaagct 574 ||| |||| || || || || | ||| ||||| ||||||||||||||||| | |||||| Sbjct: 205 cgcgtcggcggtgtctgacgccgccttggtgacggcctcgcttttctcgccgatgaagct 146 Query: 575 gccggtctggtcttttgcctcgacggcacggtcctggatggactgccccgtct 627 | ||||||||| || ||||||| ||| |||||||||| |||| ||||||||| Sbjct: 145 gatggtctggtccttcgcctcgatggcgcggtcctggacggacggccccgtct 93 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 183 ttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcaccc 242 ||||||||||||||||||||||||||||| || |||||| ||||| |||||||||||||| Sbjct: 543 ttgtctcctcccatcccgagcgtgttcataacggcgtccctggcgcccgtagcggcaccc 484 Query: 243 acaatattcccgccggccttctggaa 268 | | | ||||||||||| |||||| Sbjct: 483 atcacctgcccgccggcctgctggaa 458
>gb|AF255052.1|AF255052 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab19) mRNA, complete cds Length = 698 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 350 cttctccttggcggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctc 409 ||||| |||||| || ||||| ||||||| |||| ||| ||| | |||||||||||||| Sbjct: 384 cttctgcttggccgcctcggccgtctcggcggccttctgcttggccgcctccgtcttctc 325 Query: 410 gccgagaaagctggccgtctggtctttgccctcgacggcgcgatcct 456 |||||| |||||| | |||||||| |||| |||| ||||||| |||| Sbjct: 324 gccgaggaagctgccggtctggtccttgctctcggcggcgcggtcct 278 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| |||||||||||||||||||| Sbjct: 329 ttctcgccgaggaagctgccggtctggtc 301
>gb|AF139915.1|AF139915 Triticum aestivum ABA-inducible protein WRAB1 mRNA, complete cds Length = 698 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 350 cttctccttggcggcgtcggcagtctcggtggccgtcttcttcacggcctccgtcttctc 409 ||||| |||||| || ||||| ||||||| |||| ||| ||| | |||||||||||||| Sbjct: 384 cttctgcttggccgcctcggccgtctcggcggccttctgcttggccgcctccgtcttctc 325 Query: 410 gccgagaaagctggccgtctggtctttgccctcgacggcgcgatcct 456 |||||| |||||| | |||||||| |||| |||| ||||||| |||| Sbjct: 324 gccgaggaagctgccggtctggtccttgctctcggcggcgcggtcct 278 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| |||||||||||||||||||| Sbjct: 329 ttctcgccgaggaagctgccggtctggtc 301
>gb|AY148491.1| Triticum aestivum LEA2 protein (LEA2) mRNA, complete cds Length = 664 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 396 gcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcc 455 |||||||||||||||||||| |||||| | |||||||| |||| |||| ||||||| ||| Sbjct: 260 gcctccgtcttctcgccgaggaagctgcctgtctggtccttgctctcggcggcgcggtcc 201 Query: 456 t 456 | Sbjct: 200 t 200 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||||||| |||||||| Sbjct: 251 ttctcgccgaggaagctgcctgtctggtc 223
>dbj|AB115914.1| Triticum aestivum Wrab18 mRNA for ABA inducible protein, complete cds Length = 852 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 396 gcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcc 455 |||||||||||||||||||| |||||| | |||||||| |||| |||| ||||||| ||| Sbjct: 339 gcctccgtcttctcgccgaggaagctgccggtctggtccttgctctcggcggcgcggtcc 280 Query: 456 t 456 | Sbjct: 279 t 279 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| |||||||||||||||||||| Sbjct: 330 ttctcgccgaggaagctgccggtctggtc 302
>gb|AY148490.1| Triticum aestivum LEA1 protein (LEA1) mRNA, complete cds Length = 843 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 396 gcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcc 455 |||||||||||||||||||| |||||| |||||||| ||||||| | ||||||| ||| Sbjct: 394 gcctccgtcttctcgccgagggtgctggcggtctggtccttgccctgggcggcgcgctcc 335 Query: 456 t 456 | Sbjct: 334 t 334
>emb|X56882.1|TA3LEA Wheat mRNA for a group 3 late embryogenesis abundant protein (LEA) Length = 934 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 396 gcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcc 455 |||||||||||||||||||| |||||| |||||||| ||||||| | ||||||| ||| Sbjct: 395 gcctccgtcttctcgccgagggtgctggcggtctggtccttgccctgggcggcgcgctcc 336 Query: 456 t 456 | Sbjct: 335 t 335
>dbj|AB181486.1| Bromus inermis BiLEA2 mRNA for LEA protein, complete cds Length = 866 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 372 gtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagctggccgtctgg 431 ||||||| |||| ||| |||| | |||||||||||||||||||| | |||| | |||||| Sbjct: 424 gtctcggcggccttctgcttcgccgcctccgtcttctcgccgaggacgctgccggtctgg 365 Query: 432 tctttgc 438 || |||| Sbjct: 364 tccttgc 358 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| |||| ||||||||||||||| Sbjct: 391 ttctcgccgaggacgctgccggtctggtc 363
>emb|X13498.1|HVABAIP Barley pHVA1 mRNA for an ABA-inducible protein Length = 997 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 339 gcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttcttcacggcc 398 ||||||| || ||||| |||||| || || | ||||||| |||| ||| ||| | ||| Sbjct: 514 gcctcggcggccttctgcttggccgcctccgtcgtctcggcggccttctgcttggccgcc 455 Query: 399 tccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcct 456 ||||||||||||||||| |||| | |||||||| ||||||| | ||||||| |||| Sbjct: 454 tccgtcttctcgccgagggcgctgccggtctggtccttgccctgggcggcgcgctcct 397
>emb|X78205.1|HVHVA1 H.vulgare (Himalaya) HVA1 gene Length = 1804 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 339 gcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttcttcacggcc 398 ||||||| || ||||| |||||| || || | ||||||| |||| ||| ||| | ||| Sbjct: 993 gcctcggcggccttctgcttggccgcctccgtcgtctcggcggccttctgcttggccgcc 934 Query: 399 tccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatcct 456 ||||||||||||||||| |||| | |||||||| ||||||| | ||||||| |||| Sbjct: 933 tccgtcttctcgccgagggcgctgccggtctggtccttgccctgggcggcgcgctcct 876
>gb|AC026395.11| Homo sapiens chromosome 10 clone RP11-45D20, complete sequence Length = 172777 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 108 agggaaagagcaggcaggcgcag 130 ||||||||||||||||||||||| Sbjct: 98965 agggaaagagcaggcaggcgcag 98943
>gb|AC025947.9| Homo sapiens chromosome 10 clone RP11-78A18, complete sequence Length = 159082 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 108 agggaaagagcaggcaggcgcag 130 ||||||||||||||||||||||| Sbjct: 23851 agggaaagagcaggcaggcgcag 23829
>gb|AC148815.2| Medicago truncatula chromosome 2 BAC clone mth2-13k15, complete sequence Length = 126191 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 61 ttggaactgaaatttaaattatatcg 86 ||||||||||||||| |||||||||| Sbjct: 66039 ttggaactgaaatttcaattatatcg 66014
>emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chromosome X, complete sequence Length = 160779 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 gaactgaaatttaaattatatc 85 |||||||||||||||||||||| Sbjct: 106253 gaactgaaatttaaattatatc 106274
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 102324 ttctcgccgaggaagccgccggtctggtc 102296 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 102397 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 102338 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 102337 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 102281
>ref|XM_475821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 603 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 317 ttctcgccgaggaagccgccggtctggtc 289 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 390 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 331 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 330 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 274
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 3266 ttctcgccgaggaagccgccggtctggtc 3238 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 3339 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 3280 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 3279 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 3223
>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone BACR34C17, complete sequence Length = 167447 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 gcagcggtgtcctggacatgc 332 ||||||||||||||||||||| Sbjct: 44319 gcagcggtgtcctggacatgc 44299
>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone BACR46G10, complete sequence Length = 165158 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 gcagcggtgtcctggacatgc 332 ||||||||||||||||||||| Sbjct: 5748 gcagcggtgtcctggacatgc 5728
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 26721327 ttctcgccgaggaagccgccggtctggtc 26721299 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 26721400 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 26721341 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 26721340 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 26721284
>emb|AL840630.16| Zebrafish DNA sequence from clone CH211-279L11 in linkage group 17, complete sequence Length = 149164 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 aaggagggaaagagcaggcag 124 ||||||||||||||||||||| Sbjct: 23474 aaggagggaaagagcaggcag 23494
>gb|AY148492.1| Triticum aestivum LEA3 protein (LEA3) mRNA, complete cds Length = 776 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||| |||||||||||||||| Sbjct: 362 ttctcgccgaggtagctgccggtctggtc 334
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gcaccgtctcggacaccttcc 486 ||||||||||||||||||||| Sbjct: 2438290 gcaccgtctcggacaccttcc 2438270
>dbj|AK119713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F03, full insert sequence Length = 968 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 418 ttctcgccgaggaagccgccggtctggtc 390 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 491 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 432 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 431 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 375
>emb|Z68090.1|OSLEA3X1 O.sativa mRNA for group 3 LEA (type I) protein Length = 966 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 399 ttctcgccgaggaagccgccggtctggtc 371 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 472 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 413 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 412 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 356
>dbj|AK063984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D08, full insert sequence Length = 1277 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 512 ttctcgccgaggaagccgccggtctggtc 484 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 585 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 526 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 525 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 469
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 gcagcggtgtcctggacatgc 332 ||||||||||||||||||||| Sbjct: 194855 gcagcggtgtcctggacatgc 194835
>gb|AF046884.1|AF046884 Oryza sativa group 3 LEA protein (lea) gene, complete cds Length = 3734 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 2741 ttctcgccgaggaagccgccggtctggtc 2713
>gb|U57641.1|OSU57641 Oryza sativa LEA-like protein mRNA, embryo-specific clone Ose730, complete cds Length = 953 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 558 ttctcgccaaggaagctgccggtctggtc 586 |||||||| ||||||| |||||||||||| Sbjct: 384 ttctcgccgaggaagccgccggtctggtc 356 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Minus Query: 332 ctgcgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttctt 391 |||||| | ||||| || ||||| |||||||||| | || ||||||| |||| ||| ||| Sbjct: 457 ctgcgccgtctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgctt 398 Query: 392 cacggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggc 448 | ||| |||||||||||||| |||| | | |||||||| |||| |||| |||| Sbjct: 397 ggcctgctcggtcttctcgccgaggaagccgccggtctggtccttgctctcggcggc 341
>gb|AC109298.19| Mus musculus chromosome 3, clone RP24-271A4, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 agttccttggaactgaaatt 74 |||||||||||||||||||| Sbjct: 104528 agttccttggaactgaaatt 104547
>gb|AC154301.2| Mus musculus BAC clone RP23-392P5 from chromosome 14, complete sequence Length = 207510 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tctaattatcctttgtgatc 155 |||||||||||||||||||| Sbjct: 138657 tctaattatcctttgtgatc 138638
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 atggcctcgccgcccatctt 508 |||||||||||||||||||| Sbjct: 2183234 atggcctcgccgcccatctt 2183253
>gb|AY186951.1| Desulfuromonas acetexigens strain 2873 NifD (nifD) gene, partial cds Length = 456 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gccggccttctggaagacgt 273 |||||||||||||||||||| Sbjct: 424 gccggccttctggaagacgt 405
>ref|XM_368509.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00735.4) partial mRNA Length = 1851 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 cgccgagaaagctggccgtc 428 |||||||||||||||||||| Sbjct: 1378 cgccgagaaagctggccgtc 1359
>gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome 10, complete sequence Length = 232473 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ggaaggagggaaagagcagg 121 |||||||||||||||||||| Sbjct: 206015 ggaaggagggaaagagcagg 206034
>ref|XM_799419.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053506283.20) partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 gtcttttgcctcgacggcac 603 |||||||||||||||||||| Sbjct: 480 gtcttttgcctcgacggcac 461
>ref|XM_800111.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053506427.10) partial mRNA Length = 2937 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 gtcttttgcctcgacggcac 603 |||||||||||||||||||| Sbjct: 390 gtcttttgcctcgacggcac 371
>gb|AC133207.3| Mus musculus BAC clone RP23-116L23 from chromosome 10, complete sequence Length = 222101 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ggaaggagggaaagagcagg 121 |||||||||||||||||||| Sbjct: 40138 ggaaggagggaaagagcagg 40157
>gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, complete sequence Length = 182735 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 atcaacatctcacttgtctcctcc 193 |||||||||||||||| ||||||| Sbjct: 5720 atcaacatctcacttggctcctcc 5697
>gb|AC116180.4| Mus musculus BAC clone RP24-167M11 from chromosome 9, complete sequence Length = 149442 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ggaaggagggaaagagcagg 121 |||||||||||||||||||| Sbjct: 73097 ggaaggagggaaagagcagg 73116
>ref|XM_797464.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053432997.10) partial mRNA Length = 1828 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 gtcttttgcctcgacggcac 603 |||||||||||||||||||| Sbjct: 73 gtcttttgcctcgacggcac 54
>gb|AC146573.21| Medicago truncatula clone mth2-145j1, complete sequence Length = 128992 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tgtgtataaattaattagtt 58 |||||||||||||||||||| Sbjct: 125636 tgtgtataaattaattagtt 125617
>emb|AL157389.12| Human DNA sequence from clone RP11-248C1 on chromosome 10 Contains the 3' end of the MPHOSPH1 gene for M-phase phosphoprotein 1, a novel gene (DKFZp434P0810) and a CpG island, complete sequence Length = 134267 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ctcacttgtctcctcccatc 197 |||||||||||||||||||| Sbjct: 110867 ctcacttgtctcctcccatc 110848
>emb|Y09536.1|TAPYRCLUS T.aquaticus pyrR, pyrB, bbc and pyrC genes Length = 4542 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ggtggccgtcttcttcacgg 396 |||||||||||||||||||| Sbjct: 20 ggtggccgtcttcttcacgg 39
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ggccgtcttcttcacggcct 399 |||||||||||||||||||| Sbjct: 290236 ggccgtcttcttcacggcct 290255
>gb|AC087889.15| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-337L15, Complete Sequence, complete sequence Length = 215756 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ggaaggagggaaagagcagg 121 |||||||||||||||||||| Sbjct: 101280 ggaaggagggaaagagcagg 101299
>gb|AY900631.1| Drosophila buzzatii clone BAC 5H14, complete sequence Length = 124024 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtgtgtataaattaattag 56 |||||||||||||||||||| Sbjct: 110578 cgtgtgtataaattaattag 110559
>gb|AC127496.5| Homo sapiens chromosome 17, clone CTD-2561B21, complete sequence Length = 166274 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 atcaacatctcacttgtctcctcc 193 |||||||||||||||| ||||||| Sbjct: 41219 atcaacatctcacttggctcctcc 41242
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggtggccgtcttcttcacgg 396 |||||||||||||||||||| Sbjct: 753233 ggtggccgtcttcttcacgg 753214
>gb|AY104227.1| Zea mays PCO084365 mRNA sequence Length = 1024 Score = 40.1 bits (20), Expect = 8.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 192 cccatcccgagcgtgttcatgacagcgtccttggcg 227 |||||||| |||||| |||| || |||||||||||| Sbjct: 648 cccatccccagcgtgctcatcaccgcgtccttggcg 613
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ccttggcggcgtcggcagtc 374 |||||||||||||||||||| Sbjct: 2917843 ccttggcggcgtcggcagtc 2917862
>gb|AC174772.1| Gasterosteus aculeatus clone VMRC28-84K14, complete sequence Length = 121286 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 cttcttggtggcaccatcaacatc 178 ||||||||||||| |||||||||| Sbjct: 108513 cttcttggtggcagcatcaacatc 108536 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,073,411 Number of Sequences: 3902068 Number of extensions: 5073411 Number of successful extensions: 96027 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95695 Number of HSP's gapped (non-prelim): 324 length of query: 653 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 630 effective length of database: 17,143,297,704 effective search space: 10800277553520 effective search space used: 10800277553520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)