| Clone Name | rbags39m11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104561.1| Zea mays PCO100178 mRNA sequence Length = 1105 Score = 182 bits (92), Expect = 9e-43 Identities = 212/251 (84%), Gaps = 1/251 (0%) Strand = Plus / Minus Query: 338 tgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccggg 397 |||||| ||||||||| ||| ||||||||||||| || || ||||||||||| ||||||| Sbjct: 712 tgtaagggcccatgccaatgctggagccgccgtagggggcaccaccggcggcgtcccggg 653 Query: 398 -atttggagtagctgatgtagtagaactcgctgaggatggccgtgaagaaggtgaaggct 456 | ||||||||||||| | |||| | || || |||||||||||||||||||||||||| Sbjct: 652 gacttggagtagctgagggagtacacctggcccaggatggccgtgaagaaggtgaaggcc 593 Query: 457 gcaccggcagcgaagacacccttgcgcagcgtctcncaagagagtgggtcgccgttgaag 516 | ||| | ||||| || ||||| |||| ||||| || ||||| | |||||||| ||| Sbjct: 592 gtaccaggcgcgaacacgcccttacgcaccgtctaacatgagagcgagtcgccgtagaat 533 Query: 517 atacccctgtaccgggtgtggtatgcgttacgcactgatcctgccagcaagcacgccgct 576 || |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| | Sbjct: 532 atgcccctgtaccgggtgtggtacgcgttgcgcactgatcctgccagcaggcacgcctcc 473 Query: 577 gcgacgaggaa 587 |||| |||||| Sbjct: 472 gcgatgaggaa 462
>gb|AY107632.1| Zea mays PCO111272 mRNA sequence Length = 538 Score = 159 bits (80), Expect = 1e-35 Identities = 166/195 (85%) Strand = Plus / Plus Query: 379 ccaccggcggcatcccgggatttggagtagctgatgtagtagaactcgctgaggatggcc 438 ||||| |||||||| ||||||||||||||||||| |||||| | ||||| ||||||||| Sbjct: 340 ccaccagcggcatctcgggatttggagtagctgaggtagtatacctcgcccaggatggcc 399 Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagcgtctcncaagag 498 ||||||||||| || || || || ||||||||||| ||||| |||| |||||| || ||| Sbjct: 400 gtgaagaaggtaaatgccgcgccagcagcgaagacgcccttccgcaccgtctcgcatgag 459 Query: 499 agtgggtcgccgttgaagatacccctgtaccgggtgtggtatgcgttacgcactgatcct 558 || | ||||||| ||| | |||||||||||||||||||| ||||| || |||||||| Sbjct: 460 agggactcgccgtagaatacgcccctgtaccgggtgtggtacgcgttgcgtactgatccc 519 Query: 559 gccagcaagcacgcc 573 ||||||| ||||||| Sbjct: 520 gccagcaggcacgcc 534
>ref|XM_477988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 908 Score = 151 bits (76), Expect = 3e-33 Identities = 171/203 (84%) Strand = Plus / Minus Query: 337 ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 396 ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| ||| Sbjct: 670 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 611 Query: 397 gatttggagtagctgatgtagtagaactcgctgaggatggccgtgaagaaggtgaaggct 456 || ||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 610 gacttggagtagctaacgtagtagaattcgctgaggatggctgtgaagaaggtgaaggcc 551 Query: 457 gcaccggcagcgaagacacccttgcgcagcgtctcncaagagagtgggtcgccgttgaag 516 ||||| ||||| |||||||| ||||||| ||||| || |||| | ||||| ||| Sbjct: 550 gcaccagcagcaaagacacctttgcgcacagtctcgcaggagacggactcgccaacgaac 491 Query: 517 atacccctgtaccgggtgtggta 539 || |||||||||||||||||||| Sbjct: 490 atccccctgtaccgggtgtggta 468 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 102 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 157 ||||||||||||||||||||||||| || || |||||||| | ||||||||||| Sbjct: 871 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 816
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 151 bits (76), Expect = 3e-33 Identities = 171/203 (84%) Strand = Plus / Plus Query: 337 ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 396 ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| ||| Sbjct: 16173356 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 16173415 Query: 397 gatttggagtagctgatgtagtagaactcgctgaggatggccgtgaagaaggtgaaggct 456 || ||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 16173416 gacttggagtagctaacgtagtagaattcgctgaggatggctgtgaagaaggtgaaggcc 16173475 Query: 457 gcaccggcagcgaagacacccttgcgcagcgtctcncaagagagtgggtcgccgttgaag 516 ||||| ||||| |||||||| ||||||| ||||| || |||| | ||||| ||| Sbjct: 16173476 gcaccagcagcaaagacacctttgcgcacagtctcgcaggagacggactcgccaacgaac 16173535 Query: 517 atacccctgtaccgggtgtggta 539 || |||||||||||||||||||| Sbjct: 16173536 atccccctgtaccgggtgtggta 16173558 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 102 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 157 ||||||||||||||||||||||||| || || |||||||| | ||||||||||| Sbjct: 16173155 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 16173210
>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F09 Length = 166568 Score = 151 bits (76), Expect = 3e-33 Identities = 171/203 (84%) Strand = Plus / Plus Query: 337 ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 396 ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| ||| Sbjct: 143689 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 143748 Query: 397 gatttggagtagctgatgtagtagaactcgctgaggatggccgtgaagaaggtgaaggct 456 || ||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 143749 gacttggagtagctaacgtagtagaattcgctgaggatggctgtgaagaaggtgaaggcc 143808 Query: 457 gcaccggcagcgaagacacccttgcgcagcgtctcncaagagagtgggtcgccgttgaag 516 ||||| ||||| |||||||| ||||||| ||||| || |||| | ||||| ||| Sbjct: 143809 gcaccagcagcaaagacacctttgcgcacagtctcgcaggagacggactcgccaacgaac 143868 Query: 517 atacccctgtaccgggtgtggta 539 || |||||||||||||||||||| Sbjct: 143869 atccccctgtaccgggtgtggta 143891 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 102 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 157 ||||||||||||||||||||||||| || || |||||||| | ||||||||||| Sbjct: 143488 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 143543
>dbj|AK059964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F08, full insert sequence Length = 908 Score = 151 bits (76), Expect = 3e-33 Identities = 171/203 (84%) Strand = Plus / Minus Query: 337 ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 396 ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| ||| Sbjct: 670 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 611 Query: 397 gatttggagtagctgatgtagtagaactcgctgaggatggccgtgaagaaggtgaaggct 456 || ||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 610 gacttggagtagctaacgtagtagaattcgctgaggatggctgtgaagaaggtgaaggcc 551 Query: 457 gcaccggcagcgaagacacccttgcgcagcgtctcncaagagagtgggtcgccgttgaag 516 ||||| ||||| |||||||| ||||||| ||||| || |||| | ||||| ||| Sbjct: 550 gcaccagcagcaaagacacctttgcgcacagtctcgcaggagacggactcgccaacgaac 491 Query: 517 atacccctgtaccgggtgtggta 539 || |||||||||||||||||||| Sbjct: 490 atccccctgtaccgggtgtggta 468 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 102 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 157 ||||||||||||||||||||||||| || || |||||||| | ||||||||||| Sbjct: 871 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 816
>emb|X85747.1|OS1A1COX O.sativa mRNA for 1-aminocyclopropane-1-carboxylate oxidase Length = 1595 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 102 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 157 ||||||||||||||||||||||||| || || |||||||| | ||||||||||| Sbjct: 197 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 252
>ref|XM_474357.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 552 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagc 486 |||| |||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 449 gtgaggaaggtgaaggcggcgccggcggcgaacacgcccttgcgcagc 402
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagc 486 |||| |||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 133375 gtgaggaaggtgaaggcggcgccggcggcgaacacgcccttgcgcagc 133328
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagc 486 |||| |||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 34679254 gtgaggaaggtgaaggcggcgccggcggcgaacacgcccttgcgcagc 34679207
>dbj|AK106193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E04, full insert sequence Length = 1034 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagc 486 |||| |||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 643 gtgaggaaggtgaaggcggcgccggcggcgaacacgcccttgcgcagc 596
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagc 486 |||| |||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 77496 gtgaggaaggtgaaggcggcgccggcggcgaacacgcccttgcgcagc 77449
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 gtgaagaaggtgaaggctgcaccggcagcgaagacacccttgcgcagc 486 |||| |||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 22592 gtgaggaaggtgaaggcggcgccggcggcgaacacgcccttgcgcagc 22545
>gb|AC125078.2| Mus musculus BAC clone RP23-478C7 from chromosome 6, complete sequence Length = 204570 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 75 tacagaaaatgagtgtgtatat 96 |||||||||||||||||||||| Sbjct: 45578 tacagaaaatgagtgtgtatat 45557
>gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosome 16, complete sequence Length = 183111 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 82 aatgagtgtgtatatgtatgcagaat 107 ||||||||||||||||||| |||||| Sbjct: 19324 aatgagtgtgtatatgtattcagaat 19349
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 gtatgcagaatccaatccaata 118 |||||||||||||||||||||| Sbjct: 1033102 gtatgcagaatccaatccaata 1033123 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 gtatgcagaatccaatccaata 118 |||||||||||||||||||||| Sbjct: 890070 gtatgcagaatccaatccaata 890091
>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence Length = 181750 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 ataaagtggtataatacatttg 25 |||||||||||||||||||||| Sbjct: 103586 ataaagtggtataatacatttg 103607
>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete sequence Length = 194283 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 82 aatgagtgtgtatatgtatgcagaat 107 ||||||||||||||||||| |||||| Sbjct: 3130 aatgagtgtgtatatgtattcagaat 3105
>gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome 17, complete sequence Length = 150579 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 atgagtgtgtatatgtatgca 103 ||||||||||||||||||||| Sbjct: 123137 atgagtgtgtatatgtatgca 123117
>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete sequence Length = 226856 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 atgagtgtgtatatgtatgca 103 ||||||||||||||||||||| Sbjct: 147380 atgagtgtgtatatgtatgca 147400
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 tgcccatgccgatggtggagccgcc 368 |||||| |||||||||||||||||| Sbjct: 2144434 tgcccaggccgatggtggagccgcc 2144410
>dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-676M6, complete sequence Length = 204955 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 atgcagaatccaatccaataa 119 ||||||||||||||||||||| Sbjct: 21446 atgcagaatccaatccaataa 21426
>dbj|AP003098.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-141D23, complete sequence Length = 183853 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 atgcagaatccaatccaataa 119 ||||||||||||||||||||| Sbjct: 155403 atgcagaatccaatccaataa 155383
>emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chromosome 17, complete sequence Length = 190153 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 atgagtgtgtatatgtatgca 103 ||||||||||||||||||||| Sbjct: 17548 atgagtgtgtatatgtatgca 17568
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cggcagcgaagacacccttg 480 |||||||||||||||||||| Sbjct: 1371692 cggcagcgaagacacccttg 1371711
>ref|XM_751479.1| Ustilago maydis 521 hypothetical protein (UM00425.1) partial mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gatggccgtgaagaaggtga 451 |||||||||||||||||||| Sbjct: 161 gatggccgtgaagaaggtga 142
>emb|CR352327.13| Zebrafish DNA sequence from clone CH211-194C22 in linkage group 8, complete sequence Length = 203325 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gagtgtgtatatgtatgcag 104 |||||||||||||||||||| Sbjct: 158472 gagtgtgtatatgtatgcag 158453
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 cgctgagctccttaactgtaagtg 345 ||||||||||||||| |||||||| Sbjct: 35364 cgctgagctccttaaatgtaagtg 35387
>gb|AC117447.6| Homo sapiens 3 BAC RP11-256E13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78229 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aaatgagtgtgtatatgtat 100 |||||||||||||||||||| Sbjct: 27176 aaatgagtgtgtatatgtat 27157
>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence Length = 153028 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tgaagacagcaaacacattt 185 |||||||||||||||||||| Sbjct: 150366 tgaagacagcaaacacattt 150385
>gb|AC110814.5| Homo sapiens BAC clone RP11-1338A7 from 4, complete sequence Length = 137723 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 catacataacctagtgaaga 171 |||||||||||||||||||| Sbjct: 17164 catacataacctagtgaaga 17145
>emb|AL365205.35| Human DNA sequence from clone RP11-298J23 on chromosome 6 Contains the 5' end of the TFEB gene for transcription factor EB, the PGC gene for progastricsin, the FRS3 gene for fibroblast growth factor receptor substrate 3, the C6orf49 gene for chromosome 6 open reading frame 49, the 3' end of the USP49 gene for ubiquitin specific protease 49, the 3' end of a novel gene and 5 CpG islands, complete sequence Length = 106711 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atgagtgtgtatatgtatgc 102 |||||||||||||||||||| Sbjct: 93449 atgagtgtgtatatgtatgc 93430
>emb|BX067482.1|CNS09O8E Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC51AG07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 921 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 767 gaagaaggagaaggctgcaccggc 744
>emb|BX067481.1|CNS09O8D Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC51AG07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 820 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 471 gaagaaggagaaggctgcaccggc 494
>emb|BX062263.1|CNS09K7F Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC43BH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 873 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 378 gaagaaggagaaggctgcaccggc 355
>emb|BX062262.1|CNS09K7E Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC43BH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 916 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 469 gaagaaggagaaggctgcaccggc 492
>emb|BX059689.1|CNS09I7X Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC4CF12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 665 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 472 gaagaaggagaaggctgcaccggc 495
>emb|BX056457.1|CNS09FQ5 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC35DA08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 848 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 464 gaagaaggagaaggctgcaccggc 487
>emb|BX055315.1|CNS09EUF Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC33DE10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 868 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 402 gaagaaggagaaggctgcaccggc 379
>emb|BX055314.1|CNS09EUE Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC33DE10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 959 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 494 gaagaaggagaaggctgcaccggc 517
>emb|BX052326.1|CNS09CJE Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC3BE03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 608 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 457 gaagaaggagaaggctgcaccggc 434
>emb|BX052325.1|CNS09CJD Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC3BE03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1015 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 484 gaagaaggagaaggctgcaccggc 507
>emb|BX048969.1|CNS099Y5 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC24CB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 715 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 400 gaagaaggagaaggctgcaccggc 377
>emb|BX048968.1|CNS099Y4 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC24CB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 385 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 345 gaagaaggagaaggctgcaccggc 368
>emb|BX046050.1|CNS097P2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC2BH05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 906 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 774 gaagaaggagaaggctgcaccggc 751
>emb|BX046049.1|CNS097P1 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC2BH05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 836 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 471 gaagaaggagaaggctgcaccggc 494
>emb|BX040998.1|CNS093SQ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC12AE10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 834 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 679 gaagaaggagaaggctgcaccggc 656
>emb|BX040997.1|CNS093SP Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC12AE10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 993 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 504 gaagaaggagaaggctgcaccggc 527
>ref|XM_777717.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat domain 41 (LOC577493), mRNA Length = 1368 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tcccgtaaacctccagcgccgagc 295 ||||||| |||||||||||||||| Sbjct: 586 tcccgtacacctccagcgccgagc 563
>gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome 13, complete sequence Length = 172769 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tgaagacagcaaacacattt 185 |||||||||||||||||||| Sbjct: 34629 tgaagacagcaaacacattt 34648
>gb|AC159283.2| Mus musculus BAC clone RP23-317B21 from chromosome 12, complete sequence Length = 245361 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tgagtgtgtatatgtatgca 103 |||||||||||||||||||| Sbjct: 161269 tgagtgtgtatatgtatgca 161250
>gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, intron 5, partial sequence Length = 166617 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 cgctgagctccttaactgtaagtg 345 ||||||||||||||| |||||||| Sbjct: 155825 cgctgagctccttaaatgtaagtg 155848
>gb|AF016681.2| Caenorhabditis elegans cosmid F22E5, complete sequence Length = 47584 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gccgtgaagaaggtgaaggc 455 |||||||||||||||||||| Sbjct: 37701 gccgtgaagaaggtgaaggc 37720
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 365 cgccgtatggagcgccaccggcggcatc 392 |||||||||||| |||||||||| |||| Sbjct: 13873364 cgccgtatggagggccaccggcgccatc 13873337
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cagaatccaatccaataatc 121 |||||||||||||||||||| Sbjct: 27061124 cagaatccaatccaataatc 27061143
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1211_G06 Length = 96421 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cagaatccaatccaataatc 121 |||||||||||||||||||| Sbjct: 32211 cagaatccaatccaataatc 32230
>ref|XM_313371.2| Anopheles gambiae str. PEST ENSANGP00000011377 (ENSANGG00000008888), partial mRNA Length = 1286 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 gaagaaggtgaaggctgcaccggc 464 |||||||| ||||||||||||||| Sbjct: 516 gaagaaggagaaggctgcaccggc 539
>gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete sequence Length = 155394 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tgtgtatatgtatgcagaat 107 |||||||||||||||||||| Sbjct: 138283 tgtgtatatgtatgcagaat 138264
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 365 cgccgtatggagcgccaccggcggcatc 392 |||||||||||| |||||||||| |||| Sbjct: 13827644 cgccgtatggagggccaccggcgccatc 13827617
>emb|AL954355.10| Mouse DNA sequence from clone RP23-94F6 on chromosome X, complete sequence Length = 133265 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aaccaggaaatctcatacat 158 |||||||||||||||||||| Sbjct: 17145 aaccaggaaatctcatacat 17164
>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 50021 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 365 cgccgtatggagcgccaccggcggcatc 392 |||||||||||| |||||||||| |||| Sbjct: 42167 cgccgtatggagggccaccggcgccatc 42140
>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144552 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 365 cgccgtatggagcgccaccggcggcatc 392 |||||||||||| |||||||||| |||| Sbjct: 9992 cgccgtatggagggccaccggcgccatc 9965
>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome Length = 1181404 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ccaatccaataatccgaatt 127 |||||||||||||||||||| Sbjct: 1155067 ccaatccaataatccgaatt 1155048
>emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on chromosome 15, complete sequence Length = 207431 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgctgagctccttaactgtaagtg 345 ||||||||||||||| |||||||| Sbjct: 125286 cgctgagctccttaaatgtaagtg 125263
>emb|AL135758.32| Mouse DNA sequence from clone RP21-117J5 on chromosome 5, complete sequence Length = 142667 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aaccaggaaatctcatacat 158 |||||||||||||||||||| Sbjct: 60098 aaccaggaaatctcatacat 60117 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,567,262 Number of Sequences: 3902068 Number of extensions: 4567262 Number of successful extensions: 108682 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108268 Number of HSP's gapped (non-prelim): 413 length of query: 590 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 567 effective length of database: 17,143,297,704 effective search space: 9720249798168 effective search space used: 9720249798168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)