ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STT3_CAEEL (P46975) Oligosaccharyl transferase STT3 subunit homolog 30 4.6
2FLA2_PYRHO (O58283) Probable flagellin PH0548 30 4.6

>STT3_CAEEL (P46975) Oligosaccharyl transferase STT3 subunit homolog|
          Length = 757

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/33 (36%), Positives = 25/33 (75%)
 Frame = -2

Query: 313 AGLKASIGILIAMVSVIVLVLF*IYTTYVTSPA 215
           +G+ +++  +I+++ VI L++F ++ TYVTS A
Sbjct: 472 SGVSSNVRTIISIILVIFLLMFVVHATYVTSNA 504



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>FLA2_PYRHO (O58283) Probable flagellin PH0548|
          Length = 207

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 472 NATSQAVNVNFTARAERSRVALYSVYYNTRSDDHSSLCGPVIDDVRVWGLNG 317
           NA S+ +++ +T    RS+    S+YYN RS+ ++     + D   VW  NG
Sbjct: 80  NAGSEGIDLRYTKIVLRSKSQEVSLYYN-RSNYYNGAVDNIFDISGVWPSNG 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,990,536
Number of Sequences: 219361
Number of extensions: 1592457
Number of successful extensions: 4710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4709
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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