ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39m08 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 186 bits (471), Expect = 8e-47 Identities = 88/128 (68%), Positives = 103/128 (80%), Gaps = 4/128 (3%) Frame = -3 Query: 707 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 528 IHIDIMDYI PATC D FR MWAEFEWENKV VNT + D ++L H++KSTNMKCLTP Sbjct: 822 IHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPE 881 Query: 527 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLG 360 AL G CGF+AANLYA+S+FGEDAL N+SIEK V D ++G+IRIR+K+QG+ALSLG Sbjct: 882 KALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLG 941 Query: 359 DKITLKQK 336 DKI L QK Sbjct: 942 DKINLSQK 949
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 185 bits (469), Expect = 1e-46 Identities = 88/128 (68%), Positives = 103/128 (80%), Gaps = 4/128 (3%) Frame = -3 Query: 707 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 528 IHIDIMDYI PATC D FR MWAEFEWENKV VNT + D ++L H++KSTNMKCLTP Sbjct: 822 IHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPE 881 Query: 527 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLG 360 AL G CGF+AANLYA+S+FGEDAL N+SIEK V D ++G+IRIR+K+QG+ALSLG Sbjct: 882 KALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLG 941 Query: 359 DKITLKQK 336 DKI L QK Sbjct: 942 DKINLSQK 949
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 180 bits (456), Expect = 4e-45 Identities = 85/127 (66%), Positives = 103/127 (81%), Gaps = 3/127 (2%) Frame = -3 Query: 707 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 528 IHIDIMDYI PA+C D FR MW +FEWENKV VNT D E+L H++KSTNMKCLTP Sbjct: 832 IHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPE 891 Query: 527 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV---DGKLSGYIRIRSKTQGIALSLGD 357 AL G+CGF+AAN+YAKS+FGE+AL N+SIEK V D K++G+IRIR+K+QG+ALSLGD Sbjct: 892 KALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGD 951 Query: 356 KITLKQK 336 KI+ QK Sbjct: 952 KISSSQK 958
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 174 bits (440), Expect = 3e-43 Identities = 83/128 (64%), Positives = 100/128 (78%), Gaps = 4/128 (3%) Frame = -3 Query: 707 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 528 IHI+IMDYI PATC D FR MWAE EWENKV VNT + D ++L H++KSTNMKCLTP Sbjct: 822 IHIEIMDYIQPATCTDAEFRQMWAELEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPE 881 Query: 527 SALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALSLG 360 AL G CGF+AANLYA+S+FGEDAL N+S EK + D ++ +IRIR+K+QG+ALSLG Sbjct: 882 KALSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGPDAAVTVHIRIRAKSQGMALSLG 941 Query: 359 DKITLKQK 336 DKI L QK Sbjct: 942 DKINLSQK 949
>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)| (Beta-COP) (Fragment) Length = 400 Score = 147 bits (372), Expect = 2e-35 Identities = 74/121 (61%), Positives = 90/121 (74%), Gaps = 2/121 (1%) Frame = -3 Query: 707 IHIDIMDYISPAT--CADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLT 534 +HID++DYI PA DV FRN W EFEWENK+ VNT I D ++++H+ K TNM LT Sbjct: 273 LHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILT 332 Query: 533 PPSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLGDK 354 P L + G L+ANL AKSVFGEDAL NI IEKQ DGK+SGYIRIR+K Q IA++LG+K Sbjct: 333 PEVHLSNDTGILSANLCAKSVFGEDALANICIEKQADGKISGYIRIRAKVQSIAVTLGEK 392 Query: 353 I 351 I Sbjct: 393 I 393
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 143 bits (360), Expect = 6e-34 Identities = 68/117 (58%), Positives = 92/117 (78%), Gaps = 1/117 (0%) Frame = -3 Query: 707 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEK-EFLNHVIKSTNMKCLTP 531 I ++I+DYI PA + FR+MW EFEWENKV +++ +FL+ ++K TNM CLTP Sbjct: 821 IPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNEDISLYDFLHKIMKKTNMNCLTP 880 Query: 530 PSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLG 360 ++L G+CGFL+ANLYA S+FGEDAL+++S+EK V G +SG++RIRSKTQGIALSLG Sbjct: 881 DASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 134 bits (336), Expect = 4e-31 Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 4/128 (3%) Frame = -3 Query: 707 IHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPP 528 +H+DIMDYI PAT D FR MW FEWENK++V + + +L ++K TNM LTP Sbjct: 838 VHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLPTLHAYLRELVKGTNMGILTPS 897 Query: 527 SAL-DGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLS---GYIRIRSKTQGIALSLG 360 +L + +C FL+ NLYAKS FGEDAL N+ IEK D K + GY+RIRSK QG+ALSLG Sbjct: 898 ESLGEDDCRFLSCNLYAKSSFGEDALANLCIEK--DSKTNDVIGYVRIRSKGQGLALSLG 955 Query: 359 DKITLKQK 336 D++ L K Sbjct: 956 DRVALIAK 963
>PHR_SYNLE (P05327) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA| photolyase) (Photoreactivating enzyme) Length = 483 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/65 (26%), Positives = 30/65 (46%) Frame = -3 Query: 665 ADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANL 486 AD +R++W +F WEN+ A+ T + + I M+ LT + C + A+ Sbjct: 300 ADGPYRSLWQQFPWENREALFTAWTQAQ--TGYPIVDAAMRQLTETGWMHNRCRMIVASF 357 Query: 485 YAKSV 471 K + Sbjct: 358 LTKDL 362
>SPPA_ENTFC (Q9X480) Putative signal peptide peptidase sppA (EC 3.4.21.-)| Length = 344 Score = 31.6 bits (70), Expect = 2.5 Identities = 41/136 (30%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Frame = -3 Query: 629 EWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGEC----GFLAANLYAKSVFGE 462 E ENKV V+ F+N V K NM DG + L + + E Sbjct: 213 EEENKVIQEFVMSAYDRFVNVVAKGRNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSE 272 Query: 461 DALVNISIEKQVDGKLSGYIRIRSKTQGIALS-LGDKITLKQKGGS*AVTQSVAIVSCRR 285 DAL ++ EK++ + I ++ T G A S LG+KI Q G A T I + Sbjct: 273 DALDSLKKEKKLTD--ATVIEYKNDTTGFASSWLGNKIAEWQ--GLKATTSDRVISVFEK 328 Query: 284 ---STLPVSYYRYSGL 246 S P Y Y GL Sbjct: 329 LGFSDTPKPMYYYGGL 344
>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 30.0 bits (66), Expect = 7.2 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -2 Query: 96 AFFDKKRWCKNRCEVCVGVD*DTVFRVPFNVS 1 +F DKK WCKN+ +V V + ++ ++V+ Sbjct: 95 SFLDKKSWCKNKFQVTNQVSVEDTYKARYDVT 126
>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 30.0 bits (66), Expect = 7.2 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -2 Query: 96 AFFDKKRWCKNRCEVCVGVD*DTVFRVPFNVS 1 +F DKK WCKN+ +V V + ++ ++V+ Sbjct: 95 SFLDKKSWCKNKFQVTNQVSVEDTYKARYDVT 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,122,076 Number of Sequences: 219361 Number of extensions: 1847582 Number of successful extensions: 4454 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4345 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4445 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
