>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  206 bits (523), Expect = 8e-53
 Identities = 100/150 (66%), Positives = 119/150 (79%), Gaps = 5/150 (3%)
 Frame = -1

Query: 721  FGNIVYETSNVM-ERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVI 545
            FGNIVY+ S    +R+ VVL+DIHIDIMDYI PATC D  FR MWAEFEWENKV VNT +
Sbjct: 800  FGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNV 859

Query: 544  QDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV---- 377
             D  ++L H++KSTNMKCLTP  AL G CGF+AANLYA+S+FGEDAL N+SIEK V    
Sbjct: 860  TDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGP 919

Query: 376  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 287
            D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  205 bits (521), Expect = 1e-52
 Identities = 100/150 (66%), Positives = 119/150 (79%), Gaps = 5/150 (3%)
 Frame = -1

Query: 721  FGNIVYETSNVM-ERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVI 545
            FGNIVY+ S    +R+ VVL+DIHIDIMDYI PATC D  FR MWAEFEWENKV VNT +
Sbjct: 800  FGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNM 859

Query: 544  QDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV---- 377
             D  ++L H++KSTNMKCLTP  AL G CGF+AANLYA+S+FGEDAL N+SIEK V    
Sbjct: 860  TDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGP 919

Query: 376  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 287
            D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score =  201 bits (510), Expect = 2e-51
 Identities = 98/148 (66%), Positives = 119/148 (80%), Gaps = 3/148 (2%)
 Frame = -1

Query: 721  FGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQ 542
            FGNIVYET+  +  +VVVLN IHIDIMDYI PA+C D  FR MW +FEWENKV VNT   
Sbjct: 813  FGNIVYETA--LNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFT 870

Query: 541  DEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV---DG 371
            D  E+L H++KSTNMKCLTP  AL G+CGF+AAN+YAKS+FGE+AL N+SIEK V   D 
Sbjct: 871  DLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDS 930

Query: 370  KLSGYIRIRSKTQGIALSLGDKITLKQK 287
            K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct: 931  KVTGHIRIRAKSQGMALSLGDKISSSQK 958

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  194 bits (492), Expect = 3e-49
 Identities = 95/150 (63%), Positives = 116/150 (77%), Gaps = 5/150 (3%)
 Frame = -1

Query: 721  FGNIVYETSNVM-ERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVI 545
            FGNIVY+ S    +R+ VVL+DIHI+IMDYI PATC D  FR MWAE EWENKV VNT +
Sbjct: 800  FGNIVYDVSGAASDRNCVVLSDIHIEIMDYIQPATCTDAEFRQMWAELEWENKVTVNTNM 859

Query: 544  QDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV---- 377
             D  ++L H++KSTNMKCLTP  AL G CGF+AANLYA+S+FGEDAL N+S EK +    
Sbjct: 860  VDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGP 919

Query: 376  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 287
            D  ++ +IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTVHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score =  160 bits (405), Expect = 4e-39
 Identities = 79/138 (57%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
 Frame = -1

Query: 721  FGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQ 542
            FGNIVY      E  +VVLN I ++I+DYI PA   +  FR+MW EFEWENKV +++   
Sbjct: 800  FGNIVYGGKASDEDKIVVLNGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNED 859

Query: 541  DEK-EFLNHVIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKL 365
                +FL+ ++K TNM CLTP ++L G+CGFL+ANLYA S+FGEDAL+++S+EK V G +
Sbjct: 860  ISLYDFLHKIMKKTNMNCLTPDASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPI 919

Query: 364  SGYIRIRSKTQGIALSLG 311
            SG++RIRSKTQGIALSLG
Sbjct: 920  SGHVRIRSKTQGIALSLG 937

>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score =  159 bits (402), Expect = 8e-39
 Identities = 79/140 (56%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
 Frame = -1

Query: 715 NIVYETSNVMERSVVVLNDIHIDIMDYISPAT--CADVTFRNMWAEFEWENKVAVNTVIQ 542
           +I    S++ +++ V+LN++HID++DYI PA     DV FRN W EFEWENK+ VNT I 
Sbjct: 254 DIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPVNTNIT 313

Query: 541 DEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLS 362
           D  ++++H+ K TNM  LTP   L  + G L+ANL AKSVFGEDAL NI IEKQ DGK+S
Sbjct: 314 DLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVFGEDALANICIEKQADGKIS 373

Query: 361 GYIRIRSKTQGIALSLGDKI 302
           GYIRIR+K Q IA++LG+KI
Sbjct: 374 GYIRIRAKVQSIAVTLGEKI 393

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score =  153 bits (387), Expect = 4e-37
 Identities = 78/149 (52%), Positives = 103/149 (69%), Gaps = 4/149 (2%)
 Frame = -1

Query: 721  FGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQ 542
            FGNI+Y+ ++  +   V+LND+H+DIMDYI PAT  D  FR MW  FEWENK++V + + 
Sbjct: 817  FGNIIYDGAHGEDARYVILNDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLP 876

Query: 541  DEKEFLNHVIKSTNMKCLTPPSAL-DGECGFLAANLYAKSVFGEDALVNISIEKQVDGKL 365
                +L  ++K TNM  LTP  +L + +C FL+ NLYAKS FGEDAL N+ IEK  D K 
Sbjct: 877  TLHAYLRELVKGTNMGILTPSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEK--DSKT 934

Query: 364  S---GYIRIRSKTQGIALSLGDKITLKQK 287
            +   GY+RIRSK QG+ALSLGD++ L  K
Sbjct: 935  NDVIGYVRIRSKGQGLALSLGDRVALIAK 963

>PHR_SYNLE (P05327) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 483

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 616 ADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANL 437
           AD  +R++W +F WEN+ A+ T     +    + I    M+ LT    +   C  + A+ 
Sbjct: 300 ADGPYRSLWQQFPWENREALFTAWTQAQ--TGYPIVDAAMRQLTETGWMHNRCRMIVASF 357

Query: 436 YAKSV 422
             K +
Sbjct: 358 LTKDL 362

>SPPA_ENTFC (Q9X480) Putative signal peptide peptidase sppA (EC 3.4.21.-)|
          Length = 344

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 41/136 (30%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
 Frame = -1

Query: 580 EWENKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGEC----GFLAANLYAKSVFGE 413
           E ENKV    V+     F+N V K  NM         DG        +   L  +  + E
Sbjct: 213 EEENKVIQEFVMSAYDRFVNVVAKGRNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSE 272

Query: 412 DALVNISIEKQVDGKLSGYIRIRSKTQGIALS-LGDKITLKQKGGS*AVTQSVAIVSCRR 236
           DAL ++  EK++    +  I  ++ T G A S LG+KI   Q  G  A T    I    +
Sbjct: 273 DALDSLKKEKKLTD--ATVIEYKNDTTGFASSWLGNKIAEWQ--GLKATTSDRVISVFEK 328

Query: 235 ---STLPVSYYRYSGL 197
              S  P   Y Y GL
Sbjct: 329 LGFSDTPKPMYYYGGL 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,409,853
Number of Sequences: 219361
Number of extensions: 1805397
Number of successful extensions: 4040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4031
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)