ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39m06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103740.1| Zea mays PCO120652 mRNA sequence Length = 1013 Score = 577 bits (291), Expect = e-161 Identities = 408/447 (91%) Strand = Plus / Minus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 571 ggtcttgctccttattcggatgtaaccactgagcttgccatcatgttgcttctcaatgct 512 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 ||||||||||||||||| || |||||||| ||||||||||||||||| || |||||||| Sbjct: 511 gatgttcaccaaagcatcctcaccaaacacactctttgcataaagattagcagcaaggaa 452 Query: 455 accacattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgat 514 ||||||||| || || || || ||||||||||| |||||||||||||||||||||||||| Sbjct: 451 accacattctccgtctagtgcagacggtggtgtcagacacttcatgtttgttgacttgat 392 Query: 515 aacatgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttc 574 || |||||||||||||||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct: 391 aatgtgattcaagaattccttctcgtcttgaatcacagtattcactgccaccttattttc 332 Query: 575 ccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagat 634 ||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 331 ccattcaaattctgcccacatgttccggaaagtaacatcagcacaggtagcaggtgagat 272 Query: 635 ataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacatt 694 |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 271 gtaatccatgatgtcgatgtgaatatcatttaggacaaccactgatcgttccatcacatt 212 Query: 695 ggaagtctcgtagactatgttcccaaa 721 ||||||||||| |||||||| ||||| Sbjct: 211 tgaagtctcgtaaactatgttgccaaa 185
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 521 bits (263), Expect = e-144 Identities = 401/447 (89%) Strand = Plus / Minus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 2992 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 2991 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 2932 Query: 455 accacattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgat 514 ||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2931 accgcattctccgtcaagcgcagacggtggtgttagacacttcatgtttgttgacttgat 2872 Query: 515 aacatgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttc 574 | ||||| ||| || |||||||||| ||||| || ||||| ||||| ||||||||||| Sbjct: 2871 gatatgatccaaaaactccttctcattctgaatgacagtattcactgccaccttgttttc 2812 Query: 575 ccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagat 634 |||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||| Sbjct: 2811 ccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagttgctggtgagat 2752 Query: 635 ataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacatt 694 ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 2751 ataatccatgatgtcaatgtgaatatcatttagcacaaccactgatcgctccatcacatt 2692 Query: 695 ggaagtctcgtagactatgttcccaaa 721 ||||| || || || ||||||||||| Sbjct: 2691 tgaagtttcataaacaatgttcccaaa 2665
>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence Length = 1032 Score = 505 bits (255), Expect = e-140 Identities = 399/447 (89%) Strand = Plus / Minus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| || Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||| Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgccgtcatgttgcttctcaatgct 519 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 |||||||||||||| || || |||||||| |||||||||||||| || || |||||||| Sbjct: 518 gatgttcaccaaagcgtcctcgccaaacacactctttgcataaaggttagcagcaaggaa 459 Query: 455 accacattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgat 514 ||||||||| ||||| || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 458 accacattccccatccagtgcagacggtggtgtcagacatttcatgttcgttgacttgat 399 Query: 515 aacatgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttc 574 || ||||||||||||||||||||||| ||||| || ||||| || || ||||| ||||| Sbjct: 398 aatgtgattcaagaattccttctcatcctgaatcacagtattcacagccaccttattttc 339 Query: 575 ccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagat 634 ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 338 ccattcaaattctgcccacatgttccggaaagtaacatctgcacacgtagcaggtgagat 279 Query: 635 ataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacatt 694 |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 278 gtaatccatgatgtcgatgtgaatatcatttaggacaaccactgatcgttccatcacatt 219 Query: 695 ggaagtctcgtagactatgttcccaaa 721 |||||||| || |||||||| ||||| Sbjct: 218 tgaagtctcataaactatgttgccaaa 192
>gb|AY109245.1| Zea mays PCO147899 mRNA sequence Length = 751 Score = 400 bits (202), Expect = e-108 Identities = 382/442 (86%) Strand = Plus / Minus Query: 280 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 339 ||||||||||||| || ||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652 Query: 340 tgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgt 399 |||| ||||| |||||||| || | | ||||||||| | |||||||||| || || | Sbjct: 651 tgcttcttatcctgatgtagccagtcaacttgccatcggcctgcttctcaacactgatat 592 Query: 400 tcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccac 459 |||||| ||| || || |||||||| ||||| ||||| |||||||| |||||||| |||| Sbjct: 591 tcaccagagcgtcctcgccaaacacactcttggcatagagatttgcagcaaggaacccac 532 Query: 460 attcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataacat 519 |||| ||||| ||||| || |||||||||||||||||||||||||| ||||| |||| || Sbjct: 531 attctccatcgagcgcagatggtggtgttagacacttcatgtttgtggacttaataatat 472 Query: 520 gattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttcccact 579 |||||||||||||||||||||| || || || ||||| || || ||||| |||||||||| Sbjct: 471 gattcaagaattccttctcatcctggatcacagtattcaccgccaccttattttcccact 412 Query: 580 caaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagatataat 639 ||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |||| Sbjct: 411 caaattctgcccacatgttccggaatgcaacatcagcacatgtagcaggtgagatgtaat 352 Query: 640 ccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacattggaag 699 |||| || ||||||||||| ||||||||||||||||| |||| ||||||||| || || | Sbjct: 351 ccataatatcaatgtgaatgtcatttaggacaaccacagatcgttccatcacgttcgatg 292 Query: 700 tctcgtagactatgttcccaaa 721 | || || |||||||| ||||| Sbjct: 291 tttcataaactatgttaccaaa 270
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 383 bits (193), Expect = e-103 Identities = 367/425 (86%) Strand = Plus / Minus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 2848 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 2789 Query: 459 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 518 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 2788 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 2729 Query: 519 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttcccac 578 |||| ||| |||||||||||||| ||||| || || || || || ||||||||||||||| Sbjct: 2728 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 2669 Query: 579 tcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagatataa 638 |||||||||||||||||||||||||||| |||||| || || |||||||||||||||||| Sbjct: 2668 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 2609 Query: 639 tccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacattggaa 698 ||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| || Sbjct: 2608 tccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgctccattacatttgag 2549 Query: 699 gtctc 703 ||||| Sbjct: 2548 gtctc 2544
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 383 bits (193), Expect = e-103 Identities = 367/425 (86%) Strand = Plus / Minus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 2848 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 2789 Query: 459 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 518 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 2788 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 2729 Query: 519 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttcccac 578 |||| ||| |||||||||||||| ||||| || || || || || ||||||||||||||| Sbjct: 2728 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 2669 Query: 579 tcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagatataa 638 |||||||||||||||||||||||||||| |||||| || || |||||||||||||||||| Sbjct: 2668 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 2609 Query: 639 tccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacattggaa 698 ||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| || Sbjct: 2608 tccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgctccattacatttgag 2549 Query: 699 gtctc 703 ||||| Sbjct: 2548 gtctc 2544
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 383 bits (193), Expect = e-103 Identities = 367/425 (86%) Strand = Plus / Minus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2880 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 2879 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 2820 Query: 459 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 518 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 2819 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 2760 Query: 519 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttcccac 578 |||| ||| |||||||||||||| ||||| || || || || || ||||||||||||||| Sbjct: 2759 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 2700 Query: 579 tcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagatataa 638 |||||||||||||||||||||||||||| |||||| || || |||||||||||||||||| Sbjct: 2699 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 2640 Query: 639 tccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacattggaa 698 ||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| || Sbjct: 2639 tccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgctccattacatttgag 2580 Query: 699 gtctc 703 ||||| Sbjct: 2579 gtctc 2575
>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full insert sequence Length = 1741 Score = 383 bits (193), Expect = e-103 Identities = 367/425 (86%) Strand = Plus / Minus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 1258 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 1257 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 1198 Query: 459 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 518 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 1197 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 1138 Query: 519 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgttttcccac 578 |||| ||| |||||||||||||| ||||| || || || || || ||||||||||||||| Sbjct: 1137 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 1078 Query: 579 tcaaattctgcccacatgttccggaaagtaacatctgcgcatgtagcaggtgagatataa 638 |||||||||||||||||||||||||||| |||||| || || |||||||||||||||||| Sbjct: 1077 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 1018 Query: 639 tccatgatgtcaatgtgaatatcatttaggacaaccactgatctttccatcacattggaa 698 ||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| || Sbjct: 1017 tccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgctccattacatttgag 958 Query: 699 gtctc 703 ||||| Sbjct: 957 gtctc 953
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 10020956 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 10020957 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 10021016 Query: 455 accacattcgccatcaagcgc 475 ||| ||||| || |||||||| Sbjct: 10021017 accgcattctccgtcaagcgc 10021037 Score = 210 bits (106), Expect = 5e-51 Identities = 145/158 (91%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 10022550 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 10022609 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 10022610 gctggtgagatataatccatgatgtcaatgtgaatatcatttagcacaaccactgatcgc 10022669 Query: 684 tccatcacattggaagtctcgtagactatgttcccaaa 721 ||||||||||| ||||| || || || ||||||||||| Sbjct: 10022670 tccatcacatttgaagtttcataaacaatgttcccaaa 10022707 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 10021744 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 10021803 Query: 538 catcttgaattactgtattaactgcaacct 567 ||| ||||| || ||||| ||||| |||| Sbjct: 10021804 cattctgaatgacagtattcactgccacct 10021833
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 101238 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 101239 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 101298 Query: 455 accacattcgccatcaagcgc 475 ||| ||||| || |||||||| Sbjct: 101299 accgcattctccgtcaagcgc 101319 Score = 210 bits (106), Expect = 5e-51 Identities = 145/158 (91%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 102832 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 102891 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 102892 gctggtgagatataatccatgatgtcaatgtgaatatcatttagcacaaccactgatcgc 102951 Query: 684 tccatcacattggaagtctcgtagactatgttcccaaa 721 ||||||||||| ||||| || || || ||||||||||| Sbjct: 102952 tccatcacatttgaagtttcataaacaatgttcccaaa 102989 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 102026 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 102085 Query: 538 catcttgaattactgtattaactgcaacct 567 ||| ||||| || ||||| ||||| |||| Sbjct: 102086 cattctgaatgacagtattcactgccacct 102115
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0021A04 Length = 50487 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 48513 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 48514 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 48573 Query: 455 accacattcgccatcaagcgc 475 ||| ||||| || |||||||| Sbjct: 48574 accgcattctccgtcaagcgc 48594 Score = 210 bits (106), Expect = 5e-51 Identities = 145/158 (91%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 50107 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 50166 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 50167 gctggtgagatataatccatgatgtcaatgtgaatatcatttagcacaaccactgatcgc 50226 Query: 684 tccatcacattggaagtctcgtagactatgttcccaaa 721 ||||||||||| ||||| || || || ||||||||||| Sbjct: 50227 tccatcacatttgaagtttcataaacaatgttcccaaa 50264 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 49301 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 49360 Query: 538 catcttgaattactgtattaactgcaacct 567 ||| ||||| || ||||| ||||| |||| Sbjct: 49361 cattctgaatgacagtattcactgccacct 49390
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 275 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 334 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389 Query: 335 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 394 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 115449 Query: 395 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 454 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 115450 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 115509 Query: 455 accacattcgccatcaagcgc 475 ||| ||||| || |||||||| Sbjct: 115510 accgcattctccgtcaagcgc 115530 Score = 210 bits (106), Expect = 5e-51 Identities = 145/158 (91%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 117043 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 117102 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 117103 gctggtgagatataatccatgatgtcaatgtgaatatcatttagcacaaccactgatcgc 117162 Query: 684 tccatcacattggaagtctcgtagactatgttcccaaa 721 ||||||||||| ||||| || || || ||||||||||| Sbjct: 117163 tccatcacatttgaagtttcataaacaatgttcccaaa 117200 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 116237 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 116296 Query: 538 catcttgaattactgtattaactgcaacct 567 ||| ||||| || ||||| ||||| |||| Sbjct: 116297 cattctgaatgacagtattcactgccacct 116326
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 190 bits (96), Expect = 4e-45 Identities = 129/140 (92%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 17976 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 18035 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 18036 gcaggtgagatataatccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgc 18095 Query: 684 tccatcacattggaagtctc 703 ||||| ||||| || ||||| Sbjct: 18096 tccattacatttgaggtctc 18115 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 16669 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 16670 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 16729 Query: 459 cattcgccatcaagcgc 475 ||||| ||||||||||| Sbjct: 16730 cattctccatcaagcgc 16746 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 17511 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 17570 Query: 538 catcttgaat 547 |||| ||||| Sbjct: 17571 catcctgaat 17580
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 190 bits (96), Expect = 4e-45 Identities = 129/140 (92%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 167441 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 167500 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 167501 gcaggtgagatataatccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgc 167560 Query: 684 tccatcacattggaagtctc 703 ||||| ||||| || ||||| Sbjct: 167561 tccattacatttgaggtctc 167580 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 166134 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 166135 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 166194 Query: 459 cattcgccatcaagcgc 475 ||||| ||||||||||| Sbjct: 166195 cattctccatcaagcgc 166211 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 166976 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 167035 Query: 538 catcttgaat 547 |||| ||||| Sbjct: 167036 catcctgaat 167045
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 190 bits (96), Expect = 4e-45 Identities = 129/140 (92%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 3650304 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 3650363 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 3650364 gcaggtgagatataatccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgc 3650423 Query: 684 tccatcacattggaagtctc 703 ||||| ||||| || ||||| Sbjct: 3650424 tccattacatttgaggtctc 3650443 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3648997 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 3648998 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 3649057 Query: 459 cattcgccatcaagcgc 475 ||||| ||||||||||| Sbjct: 3649058 cattctccatcaagcgc 3649074 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 3649839 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 3649898 Query: 538 catcttgaat 547 |||| ||||| Sbjct: 3649899 catcctgaat 3649908
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 190 bits (96), Expect = 4e-45 Identities = 129/140 (92%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 3658998 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 3659057 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 3659058 gcaggtgagatataatccatgatgtcaatgtgaatatcgtttaggaccaccactgatcgc 3659117 Query: 684 tccatcacattggaagtctc 703 ||||| ||||| || ||||| Sbjct: 3659118 tccattacatttgaggtctc 3659137 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 279 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 338 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631 Query: 339 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 398 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3657691 Query: 399 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 458 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 3657692 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 3657751 Query: 459 cattcgccatcaagcgc 475 ||||| ||||||||||| Sbjct: 3657752 cattctccatcaagcgc 3657768 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 478 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 537 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 3658533 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 3658592 Query: 538 catcttgaat 547 |||| ||||| Sbjct: 3658593 catcctgaat 3658602
>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds Length = 3306 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 561 gcaaccttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcat 620 ||||||||||||||||| ||||| ||||||||||| | | ||||| ||| |||| ||| Sbjct: 2679 gcaaccttgttttcccattcaaactctgcccacatagttctgaaagcaacctctgagcac 2620 Query: 621 gtagcaggtgagatataatccatgatgtcaatgtg 655 |||||| |||||||| |||||||| |||||||| Sbjct: 2619 acagcaggggagatatagtccatgatatcaatgtg 2585 Score = 61.9 bits (31), Expect = 3e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 285 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 344 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 2955 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 2896 Query: 345 cttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgttcacc 404 ||||| || |||||||| || | | ||||| |||||||||||| || | ||||| Sbjct: 2895 cttatccttatgtaaccactcaatgttccatccgtttgcttctcaatactcaaattcaca 2836 Query: 405 aaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccacattc 463 | |||||| || |||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct: 2835 agagcatcctcaccaaacacactttttgcatataagtttgctgcaaggaatccacattc 2777
>emb|AJ720879.1| Gallus gallus mRNA for hypothetical protein, clone 28l17 Length = 3348 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 551 tgtattaactgcaaccttgttttcccactcaaattctgcccacat 595 |||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct: 2771 tgtattcactgtaactttgttttcccactcaaattctgcccacat 2727 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Minus Query: 633 atataatccatgatgtcaatgtgaatatca 662 ||||||||||| |||||||||||||||||| Sbjct: 2689 atataatccattatgtcaatgtgaatatca 2660
>ref|NM_001006467.1| Gallus gallus coatomer protein complex, subunit beta (COPB), mRNA Length = 3348 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 551 tgtattaactgcaaccttgttttcccactcaaattctgcccacat 595 |||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct: 2771 tgtattcactgtaactttgttttcccactcaaattctgcccacat 2727 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Minus Query: 633 atataatccatgatgtcaatgtgaatatca 662 ||||||||||| |||||||||||||||||| Sbjct: 2689 atataatccattatgtcaatgtgaatatca 2660
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 |||||||||||||| ||||| ||||||||||| | | ||||| ||| |||| ||| | Sbjct: 50114 accttgttttcccattcaaactctgcccacatagttctgaaagcaacctctgagcacaca 50055 Query: 624 gcaggtgagatataatccatgatgtcaatgtg 655 ||||| |||||||| |||||||| |||||||| Sbjct: 50054 gcaggggagatatagtccatgatatcaatgtg 50023 Score = 61.9 bits (31), Expect = 3e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 285 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 344 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 50562 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 50503 Query: 345 cttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgttcacc 404 ||||| || |||||||| || | | ||||| |||||||||||| || | ||||| Sbjct: 50502 cttatccttatgtaaccactcaatgttccatccgtttgcttctcaatactcaaattcaca 50443 Query: 405 aaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccacattc 463 | |||||| || |||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct: 50442 agagcatcctcaccaaacacactttttgcatataagtttgctgcaaggaatccacattc 50384 Score = 54.0 bits (27), Expect = 7e-04 Identities = 123/155 (79%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 |||||||||||||| || || ||||||||||| | | ||||| ||| |||| || | Sbjct: 44808 accttgttttcccattcgaactctgcccacatagttctgaaagcaacctctgaacacaca 44749 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 ||||| |||||||| |||||||| |||||||| || ||||| || ||||| || || Sbjct: 44748 gcaggggagatatagtccatgatatcaatgtgtatgtcattaagaacaacgacgtttcgc 44689 Query: 684 tccatcacattggaagtctcgtagactatgttccc 718 ||||| ||||| || ||||| ||||| |||||||| Sbjct: 44688 tccattacatttgatgtctcatagacgatgttccc 44654 Score = 44.1 bits (22), Expect = 0.63 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 gcaattccttgggtcttgctccttattctgatgtaacc 361 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 45214 gcaatcccttgcgtcttgctccttatccttatgtaacc 45177
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 |||||||||||||| ||||| ||||||||||| | | ||||| ||| |||| ||| | Sbjct: 38179 accttgttttcccattcaaactctgcccacatagttctgaaagcaacctctgagcacaca 38120 Query: 624 gcaggtgagatataatccatgatgtcaatgtg 655 ||||| |||||||| |||||||| |||||||| Sbjct: 38119 gcaggggagatatagtccatgatatcaatgtg 38088 Score = 61.9 bits (31), Expect = 3e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 285 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 344 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 38627 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 38568 Query: 345 cttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgttcacc 404 ||||| || |||||||| || | | ||||| |||||||||||| || | ||||| Sbjct: 38567 cttatccttatgtaaccactcaatgttccatccgtttgcttctcaatactcaaattcaca 38508 Query: 405 aaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccacattc 463 | |||||| || |||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct: 38507 agagcatcctcaccaaacacactttttgcatataagtttgctgcaaggaatccacattc 38449 Score = 54.0 bits (27), Expect = 7e-04 Identities = 123/155 (79%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcatgta 623 |||||||||||||| || || ||||||||||| | | ||||| ||| |||| || | Sbjct: 32873 accttgttttcccattcgaactctgcccacatagttctgaaagcaacctctgaacacaca 32814 Query: 624 gcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgatctt 683 ||||| |||||||| |||||||| |||||||| || ||||| || ||||| || || Sbjct: 32813 gcaggggagatatagtccatgatatcaatgtgtatgtcattaagaacaacgacgtttcgc 32754 Query: 684 tccatcacattggaagtctcgtagactatgttccc 718 ||||| ||||| || ||||| ||||| |||||||| Sbjct: 32753 tccattacatttgatgtctcatagacgatgttccc 32719 Score = 44.1 bits (22), Expect = 0.63 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 gcaattccttgggtcttgctccttattctgatgtaacc 361 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 33279 gcaatcccttgcgtcttgctccttatccttatgtaacc 33242
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds Length = 3296 Score = 60.0 bits (30), Expect = 1e-05 Identities = 126/158 (79%) Strand = Plus / Minus Query: 561 gcaaccttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcat 620 ||||||||||||||||| || || ||||||||||| | | ||||| ||| |||| || Sbjct: 2630 gcaaccttgttttcccattcgaactctgcccacatagttctgaaagcaacctctgaacac 2571 Query: 621 gtagcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgat 680 |||||| |||||||| |||||||| |||||||| || ||||| || ||||| || | Sbjct: 2570 acagcaggggagatatagtccatgatatcaatgtgtatgtcattaagaacaacgacgttt 2511 Query: 681 ctttccatcacattggaagtctcgtagactatgttccc 718 | ||||| ||||| || ||||| ||||| |||||||| Sbjct: 2510 cgctccattacatttgatgtctcatagacgatgttccc 2473 Score = 44.1 bits (22), Expect = 0.63 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 gcaattccttgggtcttgctccttattctgatgtaacc 361 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 2867 gcaatcccttgcgtcttgctccttatccttatgtaacc 2830 Score = 42.1 bits (21), Expect = 2.5 Identities = 108/137 (78%) Strand = Plus / Minus Query: 380 ttgcttctcaatgctaatgttcaccaaagcatcttctccaaacacgctctttgcataaag 439 |||||||||||| || | ||||| | |||||| || ||||| || || ||||| || | Sbjct: 2811 ttgcttctcaatactcacattcacaagagcatcctcaccaaatacactttttgcgtataa 2752 Query: 440 atttgcggcaaggaaaccacattcgccatcaagcgcggacggtggtgttagacacttcat 499 ||||| |||||||| ||||||||||| || | ||||| || | || ||||| ||||| Sbjct: 2751 gtttgctgcaaggaatccacattcgccttctattgcggatggagcagtgagacatttcat 2692 Query: 500 gtttgttgacttgataa 516 |||||| || ||||||| Sbjct: 2691 gtttgtagatttgataa 2675
>dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL09-97-P16 Length = 1212 Score = 60.0 bits (30), Expect = 1e-05 Identities = 126/158 (79%) Strand = Plus / Minus Query: 561 gcaaccttgttttcccactcaaattctgcccacatgttccggaaagtaacatctgcgcat 620 ||||||||||||||||| || || ||||||||||| | | ||||| ||| |||| || Sbjct: 585 gcaaccttgttttcccattcgaactctgcccacatagttctgaaagcaacctctgaacac 526 Query: 621 gtagcaggtgagatataatccatgatgtcaatgtgaatatcatttaggacaaccactgat 680 |||||| |||||||| |||||||| |||||||| || ||||| || ||||| || | Sbjct: 525 acagcaggggagatatagtccatgatatcaatgtgtatgtcattaagaacaacgacgttt 466 Query: 681 ctttccatcacattggaagtctcgtagactatgttccc 718 | ||||| ||||| || ||||| ||||| |||||||| Sbjct: 465 cgctccattacatttgatgtctcatagacgatgttccc 428 Score = 44.1 bits (22), Expect = 0.63 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 gcaattccttgggtcttgctccttattctgatgtaacc 361 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 822 gcaatcccttgcgtcttgctccttatccttatgtaacc 785 Score = 42.1 bits (21), Expect = 2.5 Identities = 108/137 (78%) Strand = Plus / Minus Query: 380 ttgcttctcaatgctaatgttcaccaaagcatcttctccaaacacgctctttgcataaag 439 |||||||||||| || | ||||| | |||||| || ||||| || || ||||| || | Sbjct: 766 ttgcttctcaatactcacattcacaagagcatcctcaccaaatacactttttgcgtataa 707 Query: 440 atttgcggcaaggaaaccacattcgccatcaagcgcggacggtggtgttagacacttcat 499 ||||| |||||||| ||||||||||| || | ||||| || | || ||||| ||||| Sbjct: 706 gtttgctgcaaggaatccacattcgccttctattgcggatggagcagtgagacatttcat 647 Query: 500 gtttgttgacttgataa 516 |||||| || ||||||| Sbjct: 646 gtttgtagatttgataa 630
>ref|XM_615637.2| PREDICTED: Bos taurus similar to coatomer protein complex, subunit beta, transcript variant 2 (LOC535533), mRNA Length = 3201 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| |||||||||||||||||||||||| Sbjct: 2532 gatatagtccatgatgtcaatgtgaatatca 2502 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2597 ttgttttcccattcaaattcagcccacat 2569
>ref|XM_865359.1| PREDICTED: Bos taurus similar to coatomer protein complex, subunit beta, transcript variant 3 (LOC535533), mRNA Length = 3260 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| |||||||||||||||||||||||| Sbjct: 2547 gatatagtccatgatgtcaatgtgaatatca 2517 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2612 ttgttttcccattcaaattcagcccacat 2584
>ref|XM_875628.1| PREDICTED: Bos taurus similar to coatomer protein complex, subunit beta, transcript variant 4 (LOC535533), mRNA Length = 3245 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| |||||||||||||||||||||||| Sbjct: 2532 gatatagtccatgatgtcaatgtgaatatca 2502 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2597 ttgttttcccattcaaattcagcccacat 2569
>dbj|AB168330.1| Macaca fascicularis testis cDNA clone: QtsA-11283, similar to human coatomer protein complex, subunit beta (COPB), mRNA, RefSeq: NM_016451.3 Length = 2224 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| |||||||||||||||||||||||| Sbjct: 1485 gatatagtccatgatgtcaatgtgaatatca 1455
>ref|XM_788019.1| PREDICTED: Strongylocentrotus purpuratus similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) (LOC588329), mRNA Length = 1149 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatg 596 |||||||||||||||||||| || ||||||||| Sbjct: 782 accttgttttcccactcaaactcagcccacatg 750
>ref|XM_508297.1| PREDICTED: Pan troglodytes similar to coatomer protein complex, subunit beta; beta coat protein (LOC451039), mRNA Length = 2834 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2463 gatatagtccatgatgtcgatgtgaatatca 2433 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2528 ttgttttcccattcaaattcggcccacat 2500
>ref|XM_534069.2| PREDICTED: Canis familiaris similar to coatomer protein complex, subunit beta (LOC476866), mRNA Length = 3494 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2793 gatatagtccatgatgtcgatgtgaatatca 2763
>ref|XM_793895.1| PREDICTED: Strongylocentrotus purpuratus similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) (LOC594455), partial mRNA Length = 404 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 636 taatccatgatgtcaatgtgaatatcatttaggac 670 ||||||||||| ||||||||||| ||||| ||||| Sbjct: 76 taatccatgatatcaatgtgaatgtcattcaggac 42
>emb|CR859574.1| Pongo pygmaeus mRNA; cDNA DKFZp459K154 (from clone DKFZp459K154) Length = 3295 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2639 gatatagtccatgatgtcgatgtgaatatca 2609 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2704 ttgttttcccattcaaattcggcccacat 2676
>gb|BC037280.2| Homo sapiens coatomer protein complex, subunit beta, mRNA (cDNA clone MGC:33032 IMAGE:4831366), complete cds Length = 3528 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2791 gatatagtccatgatgtcgatgtgaatatca 2761 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2856 ttgttttcccattcaaattcggcccacat 2828
>emb|AL136593.1|HSM801567 Homo sapiens mRNA; cDNA DKFZp761K102 (from clone DKFZp761K102) Length = 3330 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2668 gatatagtccatgatgtcgatgtgaatatca 2638 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2733 ttgttttcccattcaaattcggcccacat 2705
>ref|NM_016451.3| Homo sapiens coatomer protein complex, subunit beta (COPB), mRNA Length = 3528 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2791 gatatagtccatgatgtcgatgtgaatatca 2761 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2856 ttgttttcccattcaaattcggcccacat 2828
>emb|CR605573.1| full-length cDNA clone CS0DL007YF21 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2004 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 1372 gatatagtccatgatgtcgatgtgaatatca 1342 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 1437 ttgttttcccattcaaattcggcccacat 1409
>gb|AF111807.1|AF111807 Homo sapiens MSTP026 (MST026) mRNA, complete cds Length = 3265 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 2603 gatatagtccatgatgtcgatgtgaatatca 2573 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 2668 ttgttttcccattcaaattcggcccacat 2640
>gb|AC018523.9|AC018523 Homo sapiens chromosome , clone RP11-140L24, complete sequence Length = 166507 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtgaatatca 662 |||||| ||||||||||| |||||||||||| Sbjct: 142609 gatatagtccatgatgtcgatgtgaatatca 142579 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 ttgttttcccactcaaattctgcccacat 595 ||||||||||| |||||||| |||||||| Sbjct: 142674 ttgttttcccattcaaattcggcccacat 142646
>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete sequence Length = 91755 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 ctacatgacacaattgcaacagattg 265 |||||||| ||||||||||||||||| Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains the SNAP91 gene for synaptosomal-associated protein, 91 kD homolog (mouse) (KIAA0656) and a CpG island, complete sequence Length = 167018 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 aatcttttgtacattataaaaa 187 |||||||||||||||||||||| Sbjct: 106168 aatcttttgtacattataaaaa 106189
>gb|BC081657.1| Danio rerio coatomer protein complex, subunit beta 1, mRNA (cDNA clone MGC:92482 IMAGE:7045742), complete cds Length = 3302 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 563 aaccttgttttcccactcaaattctgcccacat 595 |||||| |||||||||||||| || |||||||| Sbjct: 2683 aaccttattttcccactcaaactcagcccacat 2651
>ref|XM_370363.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06860.4) partial mRNA Length = 2877 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatg 596 |||||||| ||||||||||| |||| ||||||| Sbjct: 2582 accttgttctcccactcaaactctgtccacatg 2550
>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51315 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 tcttctcatccctctctttaa 167 ||||||||||||||||||||| Sbjct: 29023 tcttctcatccctctctttaa 29043
>gb|BC100179.1| Xenopus laevis cDNA clone MGC:114704 IMAGE:6634061, complete cds Length = 3459 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 555 ttaactgcaaccttgttttcccactcaaattctgcccacat 595 ||||||| ||||| |||||||||||||| || |||||||| Sbjct: 2743 ttaactgtcaccttattttcccactcaaactccgcccacat 2703
>emb|AL096797.1|SPBC146 S.pombe chromosome II cosmid c146 Length = 33601 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 564 accttgttttcccactcaaattctgcccacatg 596 |||||||||||||| |||||||| | ||||||| Sbjct: 30642 accttgttttcccattcaaattccgtccacatg 30674
>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence Length = 155472 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 tagacacttcatgtttgttga 508 ||||||||||||||||||||| Sbjct: 48287 tagacacttcatgtttgttga 48307
>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence Length = 101116 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 tcttcctcttctcatccctct 161 ||||||||||||||||||||| Sbjct: 82774 tcttcctcttctcatccctct 82794
>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence Length = 169579 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cctcttctcatccctctcttt 165 ||||||||||||||||||||| Sbjct: 41686 cctcttctcatccctctcttt 41706
>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence Length = 170801 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 tcttcctcttctcatccctct 161 ||||||||||||||||||||| Sbjct: 7996 tcttcctcttctcatccctct 8016
>ref|XM_691860.1| PREDICTED: Danio rerio similar to Coatomer protein complex, subunit beta 1 (LOC568528), mRNA Length = 3555 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 563 aaccttgttttcccactcaaattctgcccacat 595 |||||| |||||||||||||| || |||||||| Sbjct: 2829 aaccttattttcccactcaaactcagcccacat 2797
>ref|NM_001021310.1| Schizosaccharomyces pombe 972h- coatomer subunit beta (SPBC146.14c), partial mRNA Length = 2823 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatg 596 |||||||||||||| |||||||| | ||||||| Sbjct: 2555 accttgttttcccattcaaattccgtccacatg 2523
>dbj|AB080596.1| Botryococcus braunii bCOP mRNA for coatomer subunit beta, complete cds Length = 3313 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 564 accttgttttcccactcaaattctgcccacatg 596 |||||||| ||||||||||| || ||||||||| Sbjct: 2762 accttgttctcccactcaaactcagcccacatg 2730
>ref|NM_001002013.1| Danio rerio coatomer protein complex, subunit beta 1 (copb1), mRNA Length = 3239 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 563 aaccttgttttcccactcaaattctgcccacat 595 |||||| |||||||||||||| || |||||||| Sbjct: 2665 aaccttattttcccactcaaactcagcccacat 2633
>gb|AY294010.1| Danio rerio coatomer protein complex subunit beta 1 (copb1) mRNA, complete cds Length = 3239 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 563 aaccttgttttcccactcaaattctgcccacat 595 |||||| |||||||||||||| || |||||||| Sbjct: 2665 aaccttattttcccactcaaactcagcccacat 2633
>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence Length = 204424 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 atgacacaattgcaacagatt 264 ||||||||||||||||||||| Sbjct: 73824 atgacacaattgcaacagatt 73844
>ref|NM_080781.2| Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA Length = 3348 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2647 gatatagtccatgatgtcaatgtg 2624
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 650 aatgtgaatatcatttagga 669 |||||||||||||||||||| Sbjct: 61368 aatgtgaatatcatttagga 61387
>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds Length = 987 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 atggaagggagttgggagag 73 |||||||||||||||||||| Sbjct: 98 atggaagggagttgggagag 117
>ref|NM_033370.2| Mus musculus coatomer protein complex, subunit beta 1 (Copb1), mRNA Length = 3324 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2624 gatatagtccatgatgtcaatgtg 2601
>gb|BC061882.1| Rattus norvegicus coatomer protein complex, subunit beta 1, mRNA (cDNA clone MGC:72331 IMAGE:5599357), complete cds Length = 3348 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2647 gatatagtccatgatgtcaatgtg 2624
>gb|BC030837.1| Mus musculus coatomer protein complex, subunit beta 1, mRNA (cDNA clone MGC:31018 IMAGE:4022216), complete cds Length = 3324 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2624 gatatagtccatgatgtcaatgtg 2601
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atcttttgtacattataaaa 186 |||||||||||||||||||| Sbjct: 157323 atcttttgtacattataaaa 157304
>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12, complete sequence Length = 121293 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atcttttgtacattataaaa 186 |||||||||||||||||||| Sbjct: 28118 atcttttgtacattataaaa 28099
>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence Length = 212109 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 116372 gatatagtccatgatgtcaatgtg 116395
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcttcctcttctcatccctc 160 |||||||||||||||||||| Sbjct: 64584 tcttcctcttctcatccctc 64565
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA Length = 2949 Score = 40.1 bits (20), Expect = 9.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 300 gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 343 |||||||||||||||||||| | || || || ||||||||||| Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete sequence Length = 135495 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gtacattataaaaacatctt 193 |||||||||||||||||||| Sbjct: 118337 gtacattataaaaacatctt 118318
>ref|XM_854550.1| PREDICTED: Canis familiaris similar to senataxin, transcript variant 2 (LOC480691), mRNA Length = 8571 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 atgttccggaaagtaacatc 613 |||||||||||||||||||| Sbjct: 7073 atgttccggaaagtaacatc 7054
>ref|XM_537811.2| PREDICTED: Canis familiaris similar to senataxin, transcript variant 1 (LOC480691), mRNA Length = 8670 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 atgttccggaaagtaacatc 613 |||||||||||||||||||| Sbjct: 7073 atgttccggaaagtaacatc 7054
>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA clone MGC:52826 IMAGE:4884583), complete cds Length = 3336 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ttttgtacattataaaaaca 189 |||||||||||||||||||| Sbjct: 3216 ttttgtacattataaaaaca 3235
>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0) partial mRNA Length = 1161 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 aatcttttgtacattataaaaaca 189 |||||||||||||||| ||||||| Sbjct: 324 aatcttttgtacattagaaaaaca 347
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tgtctcccaagctgagtgca 326 |||||||||||||||||||| Sbjct: 6689 tgtctcccaagctgagtgca 6670
>emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 144586 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 ggcaaggaaaccacattcgc 465 |||||||||||||||||||| Sbjct: 60540 ggcaaggaaaccacattcgc 60521
>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10, complete sequence Length = 167771 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 atggaagggagttgggagag 73 |||||||||||||||||||| Sbjct: 2324 atggaagggagttgggagag 2343
>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence Length = 170255 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cttgccatcaacttgcttct 387 |||||||||||||||||||| Sbjct: 75604 cttgccatcaacttgcttct 75623
>dbj|AK135168.1| Mus musculus 12 days embryo female ovary cDNA, RIKEN full-length enriched library, clone:6620401N12 product:coatomer protein complex, subunit beta 1, full insert sequence Length = 3344 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2656 gatatagtccatgatgtcaatgtg 2633
>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence Length = 194729 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tcacatctattcttacacca 27 |||||||||||||||||||| Sbjct: 114772 tcacatctattcttacacca 114791
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence Length = 168843 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cccttctgcttgagggtaat 304 |||||||||||||||||||| Sbjct: 29210 cccttctgcttgagggtaat 29229
>ref|XM_697090.1| PREDICTED: Danio rerio hypothetical protein LOC554904 (LOC554904), mRNA Length = 5959 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 caaggaaaccacattcgcca 467 |||||||||||||||||||| Sbjct: 4973 caaggaaaccacattcgcca 4992
>dbj|AK172214.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830106G17 product:coatomer protein complex, subunit beta 1, full insert sequence Length = 3275 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2626 gatatagtccatgatgtcaatgtg 2603
>gb|AF231925.1|AF231925 Mus musculus COPI coatomer complex, beta subunit (Copb) mRNA, complete cds Length = 3246 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2563 gatatagtccatgatgtcaatgtg 2540
>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA Length = 987 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 atggaagggagttgggagag 73 |||||||||||||||||||| Sbjct: 98 atggaagggagttgggagag 117
>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381 IMAGE:7410517), complete cds Length = 968 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 atggaagggagttgggagag 73 |||||||||||||||||||| Sbjct: 81 atggaagggagttgggagag 100
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atcttttgtacattataaaa 186 |||||||||||||||||||| Sbjct: 17897369 atcttttgtacattataaaa 17897350 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 650 aatgtgaatatcatttagga 669 |||||||||||||||||||| Sbjct: 16737258 aatgtgaatatcatttagga 16737277
>gb|AC073413.6| Homo sapiens BAC clone RP11-57B24 from 4, complete sequence Length = 183692 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 668 gacaaccactgatctttcca 687 |||||||||||||||||||| Sbjct: 54083 gacaaccactgatctttcca 54064
>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence Length = 164051 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcttcctcttctcatccctc 160 |||||||||||||||||||| Sbjct: 129969 tcttcctcttctcatccctc 129950
>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence Length = 110512 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acaaacttcacatctattct 20 |||||||||||||||||||| Sbjct: 22462 acaaacttcacatctattct 22481
>gb|AF381386.1| Monolopia congdonii chloroplast rpl20 gene, and rpl20-rps12 spacer, partial sequence Length = 654 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 526 agaattccttctcatcttgaatta 549 |||||| ||||||||||||||||| Sbjct: 559 agaattgcttctcatcttgaatta 582
>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence Length = 89352 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ctcccttctgcttgagggta 302 |||||||||||||||||||| Sbjct: 72452 ctcccttctgcttgagggta 72433
>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete sequence Length = 97756 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aatcttttgtacattataaa 185 |||||||||||||||||||| Sbjct: 6181 aatcttttgtacattataaa 6162
>emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in linkage group 20, complete sequence Length = 145495 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 caaggaaaccacattcgcca 467 |||||||||||||||||||| Sbjct: 98092 caaggaaaccacattcgcca 98073
>emb|X57228.1|RNBCOP Rat mRNA for beta COP Length = 3073 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 632 gatataatccatgatgtcaatgtg 655 |||||| ||||||||||||||||| Sbjct: 2578 gatatagtccatgatgtcaatgtg 2555
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gtacattataaaaacatctt 193 |||||||||||||||||||| Sbjct: 72225 gtacattataaaaacatctt 72206
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence Length = 185588 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cccttctgcttgagggtaat 304 |||||||||||||||||||| Sbjct: 134566 cccttctgcttgagggtaat 134585
>dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1007G5, complete sequences Length = 184643 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 catcttgaattactgtatta 557 |||||||||||||||||||| Sbjct: 46451 catcttgaattactgtatta 46432
>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete sequence Length = 129610 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tgtctcccaagctgagtgca 326 |||||||||||||||||||| Sbjct: 44905 tgtctcccaagctgagtgca 44886
>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166862 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 tttgtacattataaaaacatcttt 194 ||||||||||||||||||| |||| Sbjct: 106494 tttgtacattataaaaacaacttt 106517
>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 8/19, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cccttctgcttgagggtaat 304 |||||||||||||||||||| Sbjct: 911 cccttctgcttgagggtaat 892
>emb|AL732560.11| Mouse DNA sequence from clone RP24-209P15 on chromosome 2, complete sequence Length = 104663 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 tttgttgacttgataacatg 520 |||||||||||||||||||| Sbjct: 74561 tttgttgacttgataacatg 74580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,643,150 Number of Sequences: 3902068 Number of extensions: 6643150 Number of successful extensions: 145787 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145407 Number of HSP's gapped (non-prelim): 378 length of query: 721 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 698 effective length of database: 17,143,297,704 effective search space: 11966021797392 effective search space used: 11966021797392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
