ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39m05 |
|---|---|
| Clone Library Name | barley_pub |
>AAKB2_HUMAN (O43741) 5'-AMP-activated protein kinase subunit beta-2 (AMPK| beta-2 chain) Length = 272 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/62 (37%), Positives = 31/62 (50%) Frame = -2 Query: 723 WGQKIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQV 544 W KIPL + L+ LPEG ++YK+ VDG WV + E G +NN I V Sbjct: 99 WSTKIPLIKSHNDFVAILD--LPEGEHQYKFFVDGQWVHDPSEPVVTSQL-GTINNLIHV 155 Query: 543 AR 538 + Sbjct: 156 KK 157
>AAKB2_RAT (Q9QZH4) 5'-AMP-activated protein kinase subunit beta-2 (AMPK| beta-2 chain) Length = 271 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/62 (37%), Positives = 31/62 (50%) Frame = -2 Query: 723 WGQKIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQV 544 W KIPL + L+ LPEG ++YK+ VDG WV + E G +NN I V Sbjct: 98 WSTKIPLIKSHNDFVAILD--LPEGEHQYKFFVDGQWVHDPSEPVVTSQL-GTINNLIHV 154 Query: 543 AR 538 + Sbjct: 155 KK 156
>AAKB2_MOUSE (Q6PAM0) 5'-AMP-activated protein kinase subunit beta-2 (AMPK| beta-2 chain) Length = 271 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/62 (37%), Positives = 31/62 (50%) Frame = -2 Query: 723 WGQKIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQV 544 W KIPL + L+ LPEG ++YK+ VDG WV + E G +NN I V Sbjct: 98 WSTKIPLIKSHNDFVAILD--LPEGEHQYKFFVDGQWVHDPSEPVVTSQL-GTINNLIHV 154 Query: 543 AR 538 + Sbjct: 155 KK 156
>AAKB1_PIG (P80387) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) (5'-AMP-activated protein kinase 40 kDa subunit) (Fragment) Length = 122 Score = 38.5 bits (88), Expect = 0.022 Identities = 22/59 (37%), Positives = 31/59 (52%) Frame = -2 Query: 714 KIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQVAR 538 K+PL + L+ LPEG ++YK++VDG W + E G VNN IQV + Sbjct: 67 KLPLTRSHNNFVAILD--LPEGEHQYKFLVDGQWTHDPSEPVVTSQL-GTVNNIIQVKK 122
>AAKB1_PONPY (Q5R801) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) Length = 269 Score = 37.4 bits (85), Expect = 0.049 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -2 Query: 714 KIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQVAR 538 K+PL + L+ LPEG ++YK+ VDG W + E G VNN IQV + Sbjct: 101 KLPLTRSHNNFVAILD--LPEGEHQYKFFVDGQWTHDPSEPIVTSQL-GTVNNIIQVKK 156
>AAKB1_HUMAN (Q9Y478) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) Length = 269 Score = 37.4 bits (85), Expect = 0.049 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -2 Query: 714 KIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQVAR 538 K+PL + L+ LPEG ++YK+ VDG W + E G VNN IQV + Sbjct: 101 KLPLTRSHNNFVAILD--LPEGEHQYKFFVDGQWTHDPSEPIVTSQL-GTVNNIIQVKK 156
>AAKB1_RAT (P80386) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) (5'-AMP-activated protein kinase 40 kDa subunit) Length = 269 Score = 37.0 bits (84), Expect = 0.064 Identities = 22/59 (37%), Positives = 29/59 (49%) Frame = -2 Query: 714 KIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQVAR 538 K+PL L+ LPEG ++YK+ VDG W + E G VNN IQV + Sbjct: 101 KLPLTRSQNNFVAILD--LPEGEHQYKFFVDGQWTHDPSEPIVTSQL-GTVNNIIQVKK 156
>AAKB1_MOUSE (Q9R078) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) Length = 269 Score = 37.0 bits (84), Expect = 0.064 Identities = 22/59 (37%), Positives = 29/59 (49%) Frame = -2 Query: 714 KIPLAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQVAR 538 K+PL L+ LPEG ++YK+ VDG W + E G VNN IQV + Sbjct: 101 KLPLTRSQNNFVAILD--LPEGEHQYKFFVDGQWTHDPSEPIVTSQL-GTVNNIIQVKK 156
>CT132_HUMAN (Q9H579) Protein C20orf132| Length = 483 Score = 31.6 bits (70), Expect = 2.7 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 350 DVPGLHCEPVTPHTRHFQQ 406 D+PGLHCEP++ RH Q Sbjct: 52 DIPGLHCEPLSHSPRHLTQ 70
>NU4M_CHOCR (P48915) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 492 Score = 31.2 bits (69), Expect = 3.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 53 ICYTFCLRVSCTALYFALLLYDRYNGGT 136 +C F L +SC F+LLL+ ++N GT Sbjct: 33 LCRNFALWISCLTFLFSLLLWIQFNSGT 60
>KINB2_ARATH (Q9SCY5) SNF1-related protein kinase regulatory subunit beta-2| (AKIN beta2) (AKINB2) Length = 289 Score = 30.8 bits (68), Expect = 4.6 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 660 LPEGRYEYKYVVDGNW 613 LP G YEY+++VDG W Sbjct: 143 LPSGVYEYRFIVDGQW 158
>CBIO4_THETN (Q8R9L8) Putative cobalt import ATP-binding protein cbiO 4| Length = 569 Score = 30.0 bits (66), Expect = 7.8 Identities = 20/74 (27%), Positives = 32/74 (43%) Frame = -2 Query: 705 LAYDNEKRAWFLERELPEGRYEYKYVVDGNWVCNEHEMKTKPNADGHVNNYIQVARDGTS 526 L Y +KR L + L E + + W+ E+ K DG + Y +V RD Sbjct: 473 LDYKEQKRMMELVKRLNESGHTIIMITHTMWIVAEYAHKVAVMRDGKIEMYGKV-RDVFK 531 Query: 525 DEEKAMRERLTGPN 484 +EE+ + L P+ Sbjct: 532 EEERLLELSLKPPS 545 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,955,446 Number of Sequences: 219361 Number of extensions: 2160246 Number of successful extensions: 5586 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5374 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5585 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7706249192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
