ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39m02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 321 bits (162), Expect = 2e-84 Identities = 252/282 (89%) Strand = Plus / Minus Query: 325 gtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatga 384 ||||||||||| ||| ||| |||| |||||||||||||||||| |||||||| ||||||| Sbjct: 11733364 gtcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatga 11733305 Query: 385 aggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcc 444 || ||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct: 11733304 agttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcc 11733245 Query: 445 acgtcaccctgccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtaga 504 || | |||| | ||||||| ||| ||||| || ||||||||||||||||||||||||| Sbjct: 11733244 acttgacccggttggacgtggaggccccggggccggtgttctggtactcgccgtagtaga 11733185 Query: 505 gcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggcggggttgacgacgctgt 564 ||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||| Sbjct: 11733184 gcgtgtcgagcgcgaagttgccgctccactcgagccacccggcggggttgacgacgctgt 11733125 Query: 565 cgagctccgactgcatgaagacggtgcgggagtactgcttcc 606 ||||||||||||||||||| || ||||||||||||||||||| Sbjct: 11733124 cgagctccgactgcatgaacaccgtgcgggagtactgcttcc 11733083 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 455 gccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgag 514 ||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||||| | ||| Sbjct: 33453047 gccggccgtgctggcgccggggccctggttctggtactcgccgtagaagagcgtcttgag 33452988 Query: 515 cgcgaag 521 ||||||| Sbjct: 33452987 cgcgaag 33452981 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgc 535 ||||||||||||||||||||| | |||||||||| ||||| |||||| Sbjct: 38200508 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccacgc 38200555 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggc 547 ||||||| |||||||||||||| ||||||| || ||||||||||| | ||| ||||| Sbjct: 11698594 gtactcggcgtagtagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccggc 11698653 Query: 548 ggggt 552 ||||| Sbjct: 11698654 ggggt 11698658 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 487 ggtactcgccgtagtagagcgtgtc 511 ||||||||||||||||||||||||| Sbjct: 7430168 ggtactcgccgtagtagagcgtgtc 7430144 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cgccgtagtagagcgtgtcgagcg 516 ||||| |||||||||||||||||| Sbjct: 40206332 cgccgaagtagagcgtgtcgagcg 40206309 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 526 cgtcccacgcgagccagccggcgg 549 ||||||| |||||||||||||||| Sbjct: 7430126 cgtcccaggcgagccagccggcgg 7430103
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 321 bits (162), Expect = 2e-84 Identities = 252/282 (89%) Strand = Plus / Minus Query: 325 gtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatga 384 ||||||||||| ||| ||| |||| |||||||||||||||||| |||||||| ||||||| Sbjct: 72532 gtcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatga 72473 Query: 385 aggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcc 444 || ||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct: 72472 agttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcc 72413 Query: 445 acgtcaccctgccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtaga 504 || | |||| | ||||||| ||| ||||| || ||||||||||||||||||||||||| Sbjct: 72412 acttgacccggttggacgtggaggccccggggccggtgttctggtactcgccgtagtaga 72353 Query: 505 gcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggcggggttgacgacgctgt 564 ||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||| Sbjct: 72352 gcgtgtcgagcgcgaagttgccgctccactcgagccacccggcggggttgacgacgctgt 72293 Query: 565 cgagctccgactgcatgaagacggtgcgggagtactgcttcc 606 ||||||||||||||||||| || ||||||||||||||||||| Sbjct: 72292 cgagctccgactgcatgaacaccgtgcgggagtactgcttcc 72251 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggc 547 ||||||| |||||||||||||| ||||||| || ||||||||||| | ||| ||||| Sbjct: 37762 gtactcggcgtagtagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccggc 37821 Query: 548 ggggt 552 ||||| Sbjct: 37822 ggggt 37826
>dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H08, full insert sequence Length = 1488 Score = 321 bits (162), Expect = 2e-84 Identities = 252/282 (89%) Strand = Plus / Minus Query: 325 gtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatga 384 ||||||||||| ||| ||| |||| |||||||||||||||||| |||||||| ||||||| Sbjct: 1288 gtcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatga 1229 Query: 385 aggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcc 444 || ||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct: 1228 agttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcc 1169 Query: 445 acgtcaccctgccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtaga 504 || | |||| | ||||||| ||| ||||| || ||||||||||||||||||||||||| Sbjct: 1168 acttgacccggttggacgtggaggccccggggccggtgttctggtactcgccgtagtaga 1109 Query: 505 gcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggcggggttgacgacgctgt 564 ||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||| Sbjct: 1108 gcgtgtcgagcgcgaagttgccgctccactcgagccacccggcggggttgacgacgctgt 1049 Query: 565 cgagctccgactgcatgaagacggtgcgggagtactgcttcc 606 ||||||||||||||||||| || ||||||||||||||||||| Sbjct: 1048 cgagctccgactgcatgaacaccgtgcgggagtactgcttcc 1007
>ref|NM_183704.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 888 Score = 319 bits (161), Expect = 6e-84 Identities = 251/281 (89%) Strand = Plus / Minus Query: 326 tcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgatgaa 385 |||||||||| ||| ||| |||| |||||||||||||||||| |||||||| |||||||| Sbjct: 888 tcacagcccgacggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaa 829 Query: 386 ggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttcca 445 | ||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct: 828 gttgccgacggtgaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttcca 769 Query: 446 cgtcaccctgccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagag 505 | | |||| | ||||||| ||| ||||| || |||||||||||||||||||||||||| Sbjct: 768 cttgacccggttggacgtggaggccccggggccggtgttctggtactcgccgtagtagag 709 Query: 506 cgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggcggggttgacgacgctgtc 565 |||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||| Sbjct: 708 cgtgtcgagcgcgaagttgccgctccactcgagccacccggcggggttgacgacgctgtc 649 Query: 566 gagctccgactgcatgaagacggtgcgggagtactgcttcc 606 |||||||||||||||||| || ||||||||||||||||||| Sbjct: 648 gagctccgactgcatgaacaccgtgcgggagtactgcttcc 608
>gb|AY165036.1| Lolium perenne methyl pectinesterase mRNA, partial cds Length = 970 Score = 270 bits (136), Expect = 5e-69 Identities = 247/284 (86%) Strand = Plus / Minus Query: 323 cggtcacagcccggcggagaatgggatggacgtgccggcgagccagacgtcgccatcgat 382 |||||||| ||||| |||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct: 685 cggtcacaacccggtggagaaggggatggaagtgccggctagccagacgtcgccgtcgat 626 Query: 383 gaaggagcccaccgtgaaggtgctggcctccgatgcgctggtgatgacgcggtacccctt 442 ||| || ||||| |||||||||||||||||||| | |||| |||| |||||||| ||||| Sbjct: 625 gaatgaccccacagtgaaggtgctggcctccgacgagctgctgatcacgcggtaaccctt 566 Query: 443 ccacgtcaccctgccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagta 502 |||| | |||| | |||||||| || |||| ||||||||||| |||||||||||||| Sbjct: 565 ccacttgacccggttggacgtgctagctccggcccccgtgttctgatactcgccgtagta 506 Query: 503 gagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggcggggttgacgacgct 562 ||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| Sbjct: 505 gagcgtgtcgagcgcgaaggtgccgtcccactcgagccaccccttggggtcgacgacgct 446 Query: 563 gtcgagctccgactgcatgaagacggtgcgggagtactgcttcc 606 ||| ||||||||||||| | | || ||||| ||||||||||||| Sbjct: 445 gtccagctccgactgcaagtataccgtgcgcgagtactgcttcc 402
>gb|AY107840.1| Zea mays PCO070891 mRNA sequence Length = 977 Score = 204 bits (103), Expect = 2e-49 Identities = 184/211 (87%) Strand = Plus / Minus Query: 396 gtgaaggtgctggcctccgatgcgctggtgatgacgcggtaccccttccacgtcaccctg 455 ||||||| ||||||||| | |||||||||||||||||||||||||||||| | |||| Sbjct: 977 gtgaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgc 918 Query: 456 ccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagc 515 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 917 ccggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagc 858 Query: 516 gcgaaggtgccgtcccacgcgagccagccggcggggttgacgacgctgtcgagctccgac 575 || ||| |||||| |||| ||||||||||||| |||| ||| | ||| ||||||||| Sbjct: 857 gcaaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgac 798 Query: 576 tgcatgaagacggtgcgggagtactgcttcc 606 |||| | | || ||||||||||||||||||| Sbjct: 797 tgcaggtacaccgtgcgggagtactgcttcc 767
>ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1923 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 464 gccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaaggt 523 |||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct: 1591 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaactg 1532 Query: 524 gccgtcccacgcgagcca 541 ||||||||||| ||||| Sbjct: 1531 tccgtcccacgccagcca 1514
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 464 gccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaaggt 523 |||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct: 21973983 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaactg 21973924 Query: 524 gccgtcccacgcgagcca 541 ||||||||||| ||||| Sbjct: 21973923 tccgtcccacgccagcca 21973906
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_H01 Length = 128124 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 464 gccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaaggt 523 |||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct: 59732 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaactg 59673 Query: 524 gccgtcccacgcgagcca 541 ||||||||||| ||||| Sbjct: 59672 tccgtcccacgccagcca 59655
>dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full insert sequence Length = 1923 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 464 gccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaaggt 523 |||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct: 1591 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaactg 1532 Query: 524 gccgtcccacgcgagcca 541 ||||||||||| ||||| Sbjct: 1531 tccgtcccacgccagcca 1514
>gb|DQ376133.1| Eucalyptus globulus subsp. globulus pectin methylesterase (PME3) mRNA, partial cds Length = 763 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagcc 544 ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| Sbjct: 405 gtactcgccgtagtagagcgtgtcgagcgcgaaggtggcattccactcgagccagcc 349
>ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2035 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 ||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 1646 gtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 1593
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 ||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 28505897 gtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 28505950
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0037D09 Length = 140470 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 ||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 71649 gtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 71702
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0618H09 Length = 142306 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 ||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 63438 gtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 63491
>dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F02, full insert sequence Length = 2035 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 ||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 1646 gtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 1593
>ref|NM_190847.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1692 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 455 gccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgag 514 ||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||||| | ||| Sbjct: 1563 gccggccgtgctggcgccggggccctggttctggtactcgccgtagaagagcgtcttgag 1504 Query: 515 cgcgaag 521 ||||||| Sbjct: 1503 cgcgaag 1497
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 455 gccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgag 514 ||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||||| | ||| Sbjct: 129213 gccggccgtgctggcgccggggccctggttctggtactcgccgtagaagagcgtcttgag 129154 Query: 515 cgcgaag 521 ||||||| Sbjct: 129153 cgcgaag 129147
>dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N03, full insert sequence Length = 1849 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 455 gccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgag 514 ||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||||| | ||| Sbjct: 1569 gccggccgtgctggcgccggggccctggttctggtactcgccgtagaagagcgtcttgag 1510 Query: 515 cgcgaag 521 ||||||| Sbjct: 1509 cgcgaag 1503
>dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full insert sequence Length = 1859 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 455 gccggacgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgag 514 ||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||||| | ||| Sbjct: 1569 gccggccgtgctggcgccggggccctggttctggtactcgccgtagaagagcgtcttgag 1510 Query: 515 cgcgaag 521 ||||||| Sbjct: 1509 cgcgaag 1503
>ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 |||||| |||||||||||||||||||||||||| || ||| |||||| ||||| Sbjct: 1548 gtactccccgtagtagagcgtgtcgagcgcgaacgtcgcgttccacgccagcca 1495
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 |||||| |||||||||||||||||||||||||| || ||| |||||| ||||| Sbjct: 10863416 gtactccccgtagtagagcgtgtcgagcgcgaacgtcgcgttccacgccagcca 10863469
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 |||||| |||||||||||||||||||||||||| || ||| |||||| ||||| Sbjct: 69615 gtactccccgtagtagagcgtgtcgagcgcgaacgtcgcgttccacgccagcca 69668
>dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H06, full insert sequence Length = 1797 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagcca 541 |||||| |||||||||||||||||||||||||| || ||| |||||| ||||| Sbjct: 1548 gtactccccgtagtagagcgtgtcgagcgcgaacgtcgcgttccacgccagcca 1495
>ref|XM_475113.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1701 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 466 cggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaag 521 |||||||||| || | ||| | ||||||| ||||| |||||||||||||||||||| Sbjct: 1537 cggcgccggggccggagttgttgtactcggcgtagaagagcgtgtcgagcgcgaag 1482
>ref|NM_190160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1623 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgc 535 ||||||||||||||||||||| | |||||||||| ||||| |||||| Sbjct: 1485 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccacgc 1438
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 466 cggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaag 521 |||||||||| || | ||| | ||||||| ||||| |||||||||||||||||||| Sbjct: 39668 cggcgccggggccggagttgttgtactcggcgtagaagagcgtgtcgagcgcgaag 39613
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 466 cggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaag 521 |||||||||| || | ||| | ||||||| ||||| |||||||||||||||||||| Sbjct: 88900 cggcgccggggccggagttgttgtactcggcgtagaagagcgtgtcgagcgcgaag 88845
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 466 cggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaag 521 |||||||||| || | ||| | ||||||| ||||| |||||||||||||||||||| Sbjct: 17095533 cggcgccggggccggagttgttgtactcggcgtagaagagcgtgtcgagcgcgaag 17095478
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgc 535 ||||||||||||||||||||| | |||||||||| ||||| |||||| Sbjct: 119742 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccacgc 119789
>dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B06, full insert sequence Length = 1731 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgc 535 ||||||||||||||||||||| | |||||||||| ||||| |||||| Sbjct: 1530 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccacgc 1483
>dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076D13, full insert sequence Length = 1829 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgc 535 ||||||||||||||||||||| | |||||||||| ||||| |||||| Sbjct: 1531 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccacgc 1484
>dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138H21, full insert sequence Length = 1963 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 466 cggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaag 521 |||||||||| || | ||| | ||||||| ||||| |||||||||||||||||||| Sbjct: 1649 cggcgccggggccggagttgttgtactcggcgtagaagagcgtgtcgagcgcgaag 1594
>ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Ozsa8251 predicted mRNA Length = 1866 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 487 ggtactcgccgtagtagagcgtgtc 511 ||||||||||||||||||||||||| Sbjct: 1699 ggtactcgccgtagtagagcgtgtc 1675 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 526 cgtcccacgcgagccagccggcgg 549 ||||||| |||||||||||||||| Sbjct: 1657 cgtcccaggcgagccagccggcgg 1634
>ref|NM_183700.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1674 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggc 547 ||||||| |||||||||||||| ||||||| || ||||||||||| | ||| ||||| Sbjct: 1509 gtactcggcgtagtagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccggc 1450 Query: 548 ggggt 552 ||||| Sbjct: 1449 ggggt 1445
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 487 ggtactcgccgtagtagagcgtgtc 511 ||||||||||||||||||||||||| Sbjct: 91196 ggtactcgccgtagtagagcgtgtc 91172 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 526 cgtcccacgcgagccagccggcgg 549 ||||||| |||||||||||||||| Sbjct: 91154 cgtcccaggcgagccagccggcgg 91131
>dbj|AK107006.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D07, full insert sequence Length = 2087 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 488 gtactcgccgtagtagagcgtgtcgagcgcgaaggtgccgtcccacgcgagccagccggc 547 ||||||| |||||||||||||| ||||||| || ||||||||||| | ||| ||||| Sbjct: 1640 gtactcggcgtagtagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccggc 1581 Query: 548 ggggt 552 ||||| Sbjct: 1580 ggggt 1576
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 461 cgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||| |||||||||| ||| |||| ||||||| ||||||||||||| | ||||||||| Sbjct: 15867474 cgtgtcggcgccgggccccttgttggcgtactcggcgtagtagagcgtcttgagcgcgaa 15867533
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 461 cgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||| |||||||||| ||| |||| ||||||| ||||||||||||| | ||||||||| Sbjct: 30600 cgtgtcggcgccgggccccttgttggcgtactcggcgtagtagagcgtcttgagcgcgaa 30659
>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full insert sequence Length = 2346 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 461 cgtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||| |||||||||| ||| |||| ||||||| ||||||||||||| | ||||||||| Sbjct: 1852 cgtgtcggcgccgggccccttgttggcgtactcggcgtagtagagcgtcttgagcgcgaa 1793
>ref|XM_472740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1707 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 462 gtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||||||||||||| || ||| | | ||||| ||||||||||||||| ||||||||| Sbjct: 1568 gtgccggcgccggggccgcggttgttgaactcggcgtagtagagcgtgttgagcgcgaa 1510
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 462 gtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||||||||||||| || ||| | | ||||| ||||||||||||||| ||||||||| Sbjct: 94273 gtgccggcgccggggccgcggttgttgaactcggcgtagtagagcgtgttgagcgcgaa 94331
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 462 gtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||||||||||||| || ||| | | ||||| ||||||||||||||| ||||||||| Sbjct: 22885498 gtgccggcgccggggccgcggttgttgaactcggcgtagtagagcgtgttgagcgcgaa 22885556
>gb|AE014846.1| Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence Length = 253132 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 125 ataaataaacaatataagtataa 147 ||||||||||||||||||||||| Sbjct: 71696 ataaataaacaatataagtataa 71674
>dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P03, full insert sequence Length = 2002 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 462 gtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaa 520 |||||||||||||| || ||| | | ||||| ||||||||||||||| ||||||||| Sbjct: 1585 gtgccggcgccggggccgcggttgttgaactcggcgtagtagagcgtgttgagcgcgaa 1527
>gb|AY357183.1| Fragaria x ananassa pectinesterase (PE3) mRNA, partial cds Length = 767 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 434 gtaccccttccacgtcaccctg 455 |||||||||||||||||||||| Sbjct: 522 gtaccccttccacgtcaccctg 501
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 482 gttctggtactcgccgtagtag 503 |||||||||||||||||||||| Sbjct: 3762309 gttctggtactcgccgtagtag 3762288
>emb|X71139.1|DMHMGZA D.melanogaster HMG-Z mRNA Length = 1127 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 921 atatagttacatttatacgtac 900
>ref|NM_166477.1| Drosophila melanogaster HMG protein Z CG17921-RB, transcript variant B (HmgZ), mRNA Length = 1133 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 923 atatagttacatttatacgtac 902
>ref|NM_166476.1| Drosophila melanogaster HMG protein Z CG17921-RA, transcript variant A (HmgZ), mRNA Length = 1199 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 989 atatagttacatttatacgtac 968
>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone BACR34C17, complete sequence Length = 167447 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 153891 atatagttacatttatacgtac 153912
>gb|AC007803.7|AC007803 Drosophila melanogaster, chromosome 2R, region 58A1-58A2, BAC clone BACR13F14, complete sequence Length = 198244 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 147576 atatagttacatttatacgtac 147555
>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone BACR46G10, complete sequence Length = 165158 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 115320 atatagttacatttatacgtac 115341
>emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chromosome 2, complete sequence Length = 148620 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 114 caaaaaaccacataaataaacaatat 139 |||||||||| ||||||||||||||| Sbjct: 120837 caaaaaaccaaataaataaacaatat 120812
>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete sequence Length = 192299 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 aggacgaattgggtgctttata 295 |||||||||||||||||||||| Sbjct: 89481 aggacgaattgggtgctttata 89460
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 atatagttacatttatacgtac 37 |||||||||||||||||||||| Sbjct: 304427 atatagttacatttatacgtac 304448
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 aaaactaaaacaaataaacggaatg 67 ||||| ||||||||||||||||||| Sbjct: 171155 aaaacaaaaacaaataaacggaatg 171131
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 ccttccacgtcaccctgccgg 459 ||||||||||||||||||||| Sbjct: 312389 ccttccacgtcaccctgccgg 312409
>gb|AC069328.1|AC069328 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence Length = 75593 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 tgctttatatgatatgatgat 307 ||||||||||||||||||||| Sbjct: 14997 tgctttatatgatatgatgat 15017
>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V, complete sequence Length = 85746 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 tgctttatatgatatgatgat 307 ||||||||||||||||||||| Sbjct: 74036 tgctttatatgatatgatgat 74056
>gb|AC007312.1|AC007312 Homo sapiens clone RP11-349E11 from 7p14-15, complete sequence Length = 185652 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 aaaagaatgccacaaaactaataagatga 217 |||||||||||||||||||| ||| |||| Sbjct: 77595 aaaagaatgccacaaaactactaacatga 77623
>gb|AE003477.3| Drosophila melanogaster chromosome 3L, section 11 of 83 of the complete sequence Length = 297894 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 aaaactaaaacaaataaacggaatg 67 ||||| ||||||||||||||||||| Sbjct: 164119 aaaacaaaaacaaataaacggaatg 164143
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 gcatgaagacggtgcgggag 596 |||||||||||||||||||| Sbjct: 830496 gcatgaagacggtgcgggag 830515
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cgccgtagtagagcgtgtcgagcg 516 ||||| |||||||||||||||||| Sbjct: 898 cgccgaagtagagcgtgtcgagcg 875
>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence Length = 144770 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tcaaaactaaaacaaataaa 60 |||||||||||||||||||| Sbjct: 82753 tcaaaactaaaacaaataaa 82772
>ref|XM_864153.1| PREDICTED: Bos taurus similar to peptidylarginine deiminase type III, transcript variant 2 (LOC508160), mRNA Length = 3073 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 ccttccacgtcaccctgccggacg 462 |||||||||||||||||| ||||| Sbjct: 797 ccttccacgtcaccctgctggacg 820
>gb|BC012862.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, mRNA (cDNA clone MGC:6715 IMAGE:3585696), complete cds Length = 1488 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 71 cgagccagacgtcgccatcg 52
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 tgccggacgtgccggcgccg 473 |||||||||||||||||||| Sbjct: 2455594 tgccggacgtgccggcgccg 2455613
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 gctggcctccgatgcgctggtgat 427 ||||||||||||||||| |||||| Sbjct: 484206 gctggcctccgatgcgccggtgat 484229
>gb|AC126556.4| Mus musculus BAC clone RP23-64L3 from chromosome 15, complete sequence Length = 179685 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 caaaactaaaacaaataaac 61 |||||||||||||||||||| Sbjct: 80066 caaaactaaaacaaataaac 80085
>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence Length = 198721 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tgatagaagaagaattggtc 323 |||||||||||||||||||| Sbjct: 49412 tgatagaagaagaattggtc 49431
>gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, complete sequence Length = 140476 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tgatagaagaagaattggtc 323 |||||||||||||||||||| Sbjct: 96651 tgatagaagaagaattggtc 96670
>ref|XM_649609.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (46.t00028) partial mRNA Length = 528 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 atgatatgatgatagaagaa 314 |||||||||||||||||||| Sbjct: 461 atgatatgatgatagaagaa 480
>emb|CR318653.8| Zebrafish DNA sequence from clone DKEY-19B23 in linkage group 7, complete sequence Length = 235090 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 aaaaaaccacataaataaacaata 138 |||||| ||||||||||||||||| Sbjct: 226578 aaaaaaacacataaataaacaata 226601
>emb|AL513011.7| Human DNA sequence from clone RP11-284O5 on chromosome 6, complete sequence Length = 157204 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 caaaactaaaacaaataaac 61 |||||||||||||||||||| Sbjct: 10694 caaaactaaaacaaataaac 10713
>emb|Y13285.1|ZMY13285 Zea Mays mRNA for pectin methylesterase-like protein Length = 1901 Score = 40.1 bits (20), Expect = 8.2 Identities = 50/60 (83%) Strand = Plus / Minus Query: 462 gtgccggcgccgggtcccgtgttctggtactcgccgtagtagagcgtgtcgagcgcgaag 521 |||||||||||||| || ||| | ||||||| ||||||||||||| | ||| |||||| Sbjct: 1559 gtgccggcgccgggcccgcggttgttgtactcggcgtagtagagcgtcttgagggcgaag 1500
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 tgccggacgtgccggcgccg 473 |||||||||||||||||||| Sbjct: 1928964 tgccggacgtgccggcgccg 1928945
>gb|BC008132.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, mRNA (cDNA clone MGC:6664 IMAGE:3498954), complete cds Length = 1489 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 83 cgagccagacgtcgccatcg 64
>emb|AL662810.16| Mouse DNA sequence from clone RP23-42P24 on chromosome 11 Contains a novel gene (9630006B20Rik), a novel gene, a ribosomal protein S12 (Rps12) pseudogene, a novel gene (LOC268391), the Bcl11a gene for B-cell CLL/lymphoma 11A (zinc finger protein), two novel genes and three CpG islands, complete sequence Length = 267641 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 caaaactaaaacaaataaac 61 |||||||||||||||||||| Sbjct: 95352 caaaactaaaacaaataaac 95371
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cgccgtagtagagcgtgtcgagcg 516 ||||| |||||||||||||||||| Sbjct: 5284 cgccgaagtagagcgtgtcgagcg 5261
>gb|AE011667.1| Xanthomonas axonopodis pv. citri str. 306, section 45 of 469 of the complete genome Length = 11789 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 gctggcctccgatgcgctggtgat 427 ||||||||||||||||| |||||| Sbjct: 1049 gctggcctccgatgcgccggtgat 1072
>gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hrp pathogenicity island, complete sequence Length = 29206 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 gctggcctccgatgcgctggtgat 427 ||||||||||||||||| |||||| Sbjct: 5969 gctggcctccgatgcgccggtgat 5946
>dbj|AK146385.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730067O21 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 3115 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 99 cgagccagacgtcgccatcg 80
>gb|U33548.2|XCU33548 Xanthomonas campestris pv. vesicatoria hrp gene cluster, partial sequence Length = 16929 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 gctggcctccgatgcgctggtgat 427 ||||||||||||||||| |||||| Sbjct: 7005 gctggcctccgatgcgccggtgat 7028
>dbj|AK151786.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830037I06 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 1439 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 65 cgagccagacgtcgccatcg 46
>dbj|AK152824.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830086N03 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 1478 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 99 cgagccagacgtcgccatcg 80
>dbj|AK157855.1| Mus musculus erythroblast cDNA, RIKEN full-length enriched library, clone:K0C0029C12 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 1438 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 59 cgagccagacgtcgccatcg 40
>dbj|AK153359.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830148I15 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 1444 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 65 cgagccagacgtcgccatcg 46
>dbj|AK150277.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830001F05 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 1478 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 99 cgagccagacgtcgccatcg 80
>gb|AC182680.2| Populus trichocarpa clone Pop1-30O8, complete sequence Length = 52678 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 acataaataaacaatataag 142 |||||||||||||||||||| Sbjct: 37753 acataaataaacaatataag 37772
>dbj|AK169815.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430027B07 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, full insert sequence Length = 2868 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 1489 cgagccagacgtcgccatcg 1470
>dbj|AK168319.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730090F07 product:hypothetical ATP-dependent helicase, DEAD-box containing protein, full insert sequence Length = 1441 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 63 cgagccagacgtcgccatcg 44
>dbj|AK167107.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0031G16 product:hypothetical ATP-dependent helicase, DEAD-box containing protein, full insert sequence Length = 1500 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 121 cgagccagacgtcgccatcg 102
>dbj|AK169350.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920190H15 product:hypothetical ATP-dependent helicase, DEAD-box containing protein, full insert sequence Length = 1442 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 63 cgagccagacgtcgccatcg 44
>dbj|AK075920.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2400003O03 product:EUKARYOTIC INITIATION FACTOR 4A-LIKE NUK-34 homolog [Homo sapiens], full insert sequence Length = 1438 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 59 cgagccagacgtcgccatcg 40
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cgccgtagtagagcgtgtcgagcg 516 ||||| |||||||||||||||||| Sbjct: 149416 cgccgaagtagagcgtgtcgagcg 149393
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cgccgtagtagagcgtgtcgagcg 516 ||||| |||||||||||||||||| Sbjct: 72110 cgccgaagtagagcgtgtcgagcg 72087
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aataaacaatataagtataa 147 |||||||||||||||||||| Sbjct: 1812141 aataaacaatataagtataa 1812160
>gb|AY875714.2| Xanthomonas oryzae pv. oryzicola hrp gene cluster, partial sequence Length = 9612 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 gctggcctccgatgcgctggtgat 427 ||||||||||||||||| |||||| Sbjct: 1999 gctggcctccgatgcgccggtgat 1976
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 cgccgtagtagagcgtgtcgagcg 516 ||||| |||||||||||||||||| Sbjct: 926 cgccgaagtagagcgtgtcgagcg 903
>emb|BX571899.9| Zebrafish DNA sequence from clone DKEY-256I3 in linkage group 22, complete sequence Length = 66445 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaaccacataaataaacaat 137 |||||||||||||||||||| Sbjct: 60193 aaaccacataaataaacaat 60174
>dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-107P10, complete sequence Length = 176429 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 atcaggcaggtgcccctccg 237 |||||||||||||||||||| Sbjct: 5273 atcaggcaggtgcccctccg 5292
>dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-239P2, complete sequence Length = 176485 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 atcaggcaggtgcccctccg 237 |||||||||||||||||||| Sbjct: 157838 atcaggcaggtgcccctccg 157857
>emb|BX001045.11| Mouse DNA sequence from clone RP23-474E2 on chromosome X, complete sequence Length = 133817 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 caaaactaaaacaaataaac 61 |||||||||||||||||||| Sbjct: 58186 caaaactaaaacaaataaac 58205
>ref|NM_138669.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 (Ddx48), mRNA Length = 1489 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 83 cgagccagacgtcgccatcg 64
>gb|AC126445.5| Mus musculus BAC clone RP23-307P24 from 8, complete sequence Length = 167770 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ccgtgaaggtgctggcctcc 413 |||||||||||||||||||| Sbjct: 74702 ccgtgaaggtgctggcctcc 74683
>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete sequence Length = 244653 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgagccagacgtcgccatcg 380 |||||||||||||||||||| Sbjct: 6896 cgagccagacgtcgccatcg 6915
>emb|AL928551.8| Mouse DNA sequence from clone RP23-246P12 on chromosome 4, complete sequence Length = 215620 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tcaaaactaaaacaaataaa 60 |||||||||||||||||||| Sbjct: 122335 tcaaaactaaaacaaataaa 122316
>gb|M99173.1|XANHRPA1A Xanthomonas campstris HrpA1 gene, complete cds Length = 1824 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 gctggcctccgatgcgctggtgat 427 ||||||||||||||||| |||||| Sbjct: 978 gctggcctccgatgcgccggtgat 1001 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,489,199 Number of Sequences: 3902068 Number of extensions: 5489199 Number of successful extensions: 113714 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 112667 Number of HSP's gapped (non-prelim): 1042 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
