ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative... 426 e-116
2dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 426 e-116
3gb|BT018927.1| Zea mays clone Contig55.F mRNA sequence 422 e-115
4gb|BT024005.1| Zea mays clone EL01N0403G06 mRNA sequence 414 e-112
5ref|NM_197310.1| Oryza sativa (japonica cultivar-group) putative... 168 1e-38
6gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 geno... 143 8e-31
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 143 8e-31
9dbj|AK073197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
10gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 0... 62 2e-06
11gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 46 0.14
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
13emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.54
14emb|AL606989.3|OSJN00120 Oryza sativa genomic DNA, chromosome 4,... 44 0.54
15gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's ... 42 2.1
16gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosom... 42 2.1
17gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 42 2.1
18gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 2.1
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
20emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.1
21gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 2.1
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
23emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G... 42 2.1
24ref|XM_415942.1| PREDICTED: Gallus gallus laminin B1 (LOC396478)... 40 8.4
25gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's H... 40 8.4
26emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K... 40 8.4
27emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in ... 40 8.4
28gb|AC063923.21| Homo sapiens 3 BAC RP11-59E19 (Roswell Park Canc... 40 8.4
29gb|AC008114.25| Homo sapiens 12 BAC RP11-502N13 (Roswell Park Ca... 40 8.4
30emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in... 40 8.4
31gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromoso... 40 8.4
32gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, comple... 40 8.4
33gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Rosw... 40 8.4
34emb|BX293540.5| Zebrafish DNA sequence from clone DKEY-255N2 in ... 40 8.4

>ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative serine peptidase
            (OSJNBa0055O03.7), mRNA
          Length = 2369

 Score =  426 bits (215), Expect = e-116
 Identities = 383/439 (87%)
 Strand = Plus / Minus

                                                                        
Query: 175  caggtgatcagtaggtagctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtc 234
            ||||| ||||||| ||||||||||||||||| || ||| ||   | | |  ||||| |||
Sbjct: 2047 caggtaatcagtaagtagctatgctccatctactgcccagcaatggctcattgtcgtgtc 1988

                                                                        
Query: 235  cttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttactt 294
            |||| ||||| |||||||| | ||| |  || |||||||| ||||||||||| |||||||
Sbjct: 1987 cttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttactt 1928

                                                                        
Query: 295  tgttcactgcttctggggatgagcatttggatgaatcaccttcaatatttgaaggtgctt 354
            ||||||| |||||||| ||||| || || || || ||||||||||||| |||||| ||||
Sbjct: 1927 tgttcacagcttctggagatgaacaattagacgagtcaccttcaatatgtgaaggagctt 1868

                                                                        
Query: 355  gagggcatccggagatatcagtgcaatgcccgcagttgctgcactcaattaagtatgatg 414
            |||||||||| || | |||| ||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1867 gagggcatccagatagatcactgcaatgtccgcaattgctgcactcaattaagtatgacg 1808

                                                                        
Query: 415  gcagttcttccgatgatttctgcttagaagcatggcgccatgggtcttgagagccatttg 474
            ||| |||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1807 gcaattcttttgatgatttctgcttagaagcatggcgccatggatcttgagagccgtttg 1748

                                                                        
Query: 475  caaaaacaattttagaacctgcaattcttgtgcctccatagtataagtttgtcatggaca 534
            ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 1747 caaaaacaattttcgaacctgcaattcttgtgcctccatagtataaatttgtcatgaata 1688

                                                                        
Query: 535  catcaggataaactccttccccaaaaacatttttgcacaagtctaaatggtatcttgtat 594
            ||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 1687 catcagggtaaactccttccccaaaaacatttctgcacaagtccaaatggtaccttgtgt 1628

                               
Query: 595  cgatctttgtagagcggac 613
            | ||||||| ||| |||||
Sbjct: 1627 caatctttgcagaacggac 1609



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>dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G22, full
            insert sequence
          Length = 1986

 Score =  426 bits (215), Expect = e-116
 Identities = 383/439 (87%)
 Strand = Plus / Minus

                                                                        
Query: 175  caggtgatcagtaggtagctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtc 234
            ||||| ||||||| ||||||||||||||||| || ||| ||   | | |  ||||| |||
Sbjct: 1652 caggtaatcagtaagtagctatgctccatctactgcccagcaatggctcattgtcgtgtc 1593

                                                                        
Query: 235  cttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttactt 294
            |||| ||||| |||||||| | ||| |  || |||||||| ||||||||||| |||||||
Sbjct: 1592 cttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttactt 1533

                                                                        
Query: 295  tgttcactgcttctggggatgagcatttggatgaatcaccttcaatatttgaaggtgctt 354
            ||||||| |||||||| ||||| || || || || ||||||||||||| |||||| ||||
Sbjct: 1532 tgttcacagcttctggagatgaacaattagacgagtcaccttcaatatgtgaaggagctt 1473

                                                                        
Query: 355  gagggcatccggagatatcagtgcaatgcccgcagttgctgcactcaattaagtatgatg 414
            |||||||||| || | |||| ||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1472 gagggcatccagatagatcactgcaatgtccgcaattgctgcactcaattaagtatgacg 1413

                                                                        
Query: 415  gcagttcttccgatgatttctgcttagaagcatggcgccatgggtcttgagagccatttg 474
            ||| |||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1412 gcaattcttttgatgatttctgcttagaagcatggcgccatggatcttgagagccgtttg 1353

                                                                        
Query: 475  caaaaacaattttagaacctgcaattcttgtgcctccatagtataagtttgtcatggaca 534
            ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 1352 caaaaacaattttcgaacctgcaattcttgtgcctccatagtataaatttgtcatgaata 1293

                                                                        
Query: 535  catcaggataaactccttccccaaaaacatttttgcacaagtctaaatggtatcttgtat 594
            ||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 1292 catcagggtaaactccttccccaaaaacatttctgcacaagtccaaatggtaccttgtgt 1233

                               
Query: 595  cgatctttgtagagcggac 613
            | ||||||| ||| |||||
Sbjct: 1232 caatctttgcagaacggac 1214



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>gb|BT018927.1| Zea mays clone Contig55.F mRNA sequence
          Length = 1321

 Score =  422 bits (213), Expect = e-115
 Identities = 363/413 (87%)
 Strand = Plus / Minus

                                                                       
Query: 191 agctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtccttggtcttggcattc 250
           |||||||||||||||||| ||| ||   | | || ||||  ||||||| |||||||||||
Sbjct: 865 agctatgctccatctgcttcccagccatggctccttgtcatgtccttgctcttggcattc 806

                                                                       
Query: 251 tgacagccacaggtcgatgtgatccacgatctgcttccttactttgttcactgcttctgg 310
           ||| ||||||||||| |||||||| || |||| |||||||||||||||||  ||||| ||
Sbjct: 805 tgatagccacaggtcaatgtgatcgacaatctccttccttactttgttcagagcttcggg 746

                                                                       
Query: 311 ggatgagcatttggatgaatcaccttcaatatttgaaggtgcttgagggcatccggagat 370
            | |||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| 
Sbjct: 745 aggtgagcacttggatgaatcaccttcaatgtttgaaggagcttgagggcatccagagag 686

                                                                       
Query: 371 atcagtgcaatgcccgcagttgctgcactcaattaagtatgatggcagttcttccgatga 430
           |||| |||| || ||||||||  |||||||||||| ||||||||||| ||| || |||||
Sbjct: 685 atcactgcagtgtccgcagttcttgcactcaattaggtatgatggcaattcgtctgatga 626

                                                                       
Query: 431 tttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaattttaga 490
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 625 tttctgcttagaagcgtggcgccatgggtcttgagatccatttgcaaaaacaattttaga 566

                                                                       
Query: 491 acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550
           ||||||||||| |||||||||||||||||||||||||||  | |||||||| || |||||
Sbjct: 565 acctgcaattcctgtgcctccatagtataagtttgtcataaagacatcagggtagactcc 506

                                                                
Query: 551 ttccccaaaaacatttttgcacaagtctaaatggtatcttgtatcgatctttg 603
           ||| || ||||||||| |||||||||| |||||||| || || ||||||||||
Sbjct: 505 ttcgccgaaaacatttctgcacaagtccaaatggtacctcgtgtcgatctttg 453



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>gb|BT024005.1| Zea mays clone EL01N0403G06 mRNA sequence
          Length = 1602

 Score =  414 bits (209), Expect = e-112
 Identities = 362/413 (87%)
 Strand = Plus / Minus

                                                                        
Query: 191  agctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtccttggtcttggcattc 250
            |||||||||||||||||| ||| ||   | | || ||||  ||||||| |||||||||||
Sbjct: 1363 agctatgctccatctgcttcccagccatggctccttgtcatgtccttgctcttggcattc 1304

                                                                        
Query: 251  tgacagccacaggtcgatgtgatccacgatctgcttccttactttgttcactgcttctgg 310
            ||| ||||||||||| |||||||| || |||| |||||||||||||||||  ||||| ||
Sbjct: 1303 tgatagccacaggtcaatgtgatcgacaatctccttccttactttgttcagagcttcggg 1244

                                                                        
Query: 311  ggatgagcatttggatgaatcaccttcaatatttgaaggtgcttgagggcatccggagat 370
             | |||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| 
Sbjct: 1243 aggtgagcacttggatgaatcaccttcaatgtttgaaggagcttgagggcatccagagag 1184

                                                                        
Query: 371  atcagtgcaatgcccgcagttgctgcactcaattaagtatgatggcagttcttccgatga 430
            |||| |||| || ||||||||  |||||||||||| ||||||||||| ||| || |||||
Sbjct: 1183 atcactgcagtgtccgcagttcttgcactcaattaggtatgatggcaattcgtctgatga 1124

                                                                        
Query: 431  tttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaattttaga 490
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1123 tttctgcttagaagcgtggcgccatgggtcttgagatccatttgcaaaaacaattttaga 1064

                                                                        
Query: 491  acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550
            ||||||||||| |||||||||||||||||||||||||||  | |||||||| || |||||
Sbjct: 1063 acctgcaattcctgtgcctccatagtataagtttgtcataaagacatcagggtagactcc 1004

                                                                 
Query: 551  ttccccaaaaacatttttgcacaagtctaaatggtatcttgtatcgatctttg 603
            ||| || | ||||||| |||||||||| |||||||| || || ||||||||||
Sbjct: 1003 ttcgccgagaacatttctgcacaagtccaaatggtacctcgtgtcgatctttg 951



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>ref|NM_197310.1| Oryza sativa (japonica cultivar-group) putative serine peptidase
            (OSJNBa0055O03.8), mRNA
          Length = 1509

 Score =  168 bits (85), Expect = 1e-38
 Identities = 178/209 (85%)
 Strand = Plus / Minus

                                                                        
Query: 402  attaagtatgatggcagttcttccgatgatttctgcttagaagcatggcgccatgggtct 461
            |||| |||||||||||  | || ||| |||||||| || || |||||||||||||| |||
Sbjct: 1325 attatgtatgatggcatatatttcgacgatttctgtttcgaggcatggcgccatggatct 1266

                                                                        
Query: 462  tgagagccatttgcaaaaacaattttagaacctgcaattcttgtgcctccatagtataag 521
            |||||||||||||  || || ||||||||| | ||||||||||||||||| || || |||
Sbjct: 1265 tgagagccatttgtgaacactattttagaagcagcaattcttgtgcctccgtaatacaag 1206

                                                                        
Query: 522  tttgtcatggacacatcaggataaactccttccccaaaaacatttttgcacaagtctaaa 581
            ||||||||| |||||||||||||||| ||||| ||||| |||||| |||| | ||| |||
Sbjct: 1205 tttgtcatgaacacatcaggataaacaccttcaccaaagacatttctgcataggtccaaa 1146

                                         
Query: 582  tggtatcttgtatcgatctttgtagagcg 610
            ||||| | ||||| ||||| |||||||||
Sbjct: 1145 tggtaccctgtattgatctctgtagagcg 1117



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>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete
             sequence
          Length = 82909

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                         
Query: 491   acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550
             |||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct: 13874 acctgcaattcttgtgcctccatagtataaatttgtcatgaatacatcagggtaaactcc 13815

                                                 
Query: 551   ttccccaaaaacatttttgcacaagtctaaatggta 586
             |||||||||||||||| |||||||||| ||||||||
Sbjct: 13814 ttccccaaaaacatttctgcacaagtccaaatggta 13779



 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                         
Query: 426   gatgatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatt 485
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 14503 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 14444

                         
Query: 486   ttagaacctgca 497
             || |||||||||
Sbjct: 14443 ttcgaacctgca 14432



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                         
Query: 332   accttcaatatttgaaggtgcttgagggcatccggagatatcagtgcaatgcccgcagtt 391
             ||||||||||| |||||| |||||||||||||| || | |||| ||||||| ||||| ||
Sbjct: 14736 accttcaatatgtgaaggagcttgagggcatccagatagatcactgcaatgtccgcaatt 14677

                                       
Query: 392   gctgcactcaattaagtatgatggca 417
             ||||||||||||||||||||| ||||
Sbjct: 14676 gctgcactcaattaagtatgacggca 14651



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                         
Query: 490   aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549
             |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| |
Sbjct: 23531 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 23472

                                                  
Query: 550   cttccccaaaaacatttttgcacaagtctaaatggta 586
             |||| ||||| |||||| |||| | ||| ||||||||
Sbjct: 23471 cttcaccaaagacatttctgcataggtccaaatggta 23435



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 234   ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293
             ||||| ||||| |||||||| | ||| |  || |||||||| ||||||||||| ||||||
Sbjct: 15045 ccttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttact 14986

                                    
Query: 294   ttgttcactgcttctggggatga 316
             |||||||| |||||||| |||||
Sbjct: 14985 ttgttcacagcttctggagatga 14963



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 429   gatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatttta 488
             |||||||| || || |||||||||||||| ||||||||||||||||  || || ||||||
Sbjct: 23886 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 23827

                      
Query: 489   gaacctgca 497
             ||| |||||
Sbjct: 23826 gaagctgca 23818



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 175   caggtgatcagtaggtagctatgctccatct 205
             ||||| ||||||| |||||||||||||||||
Sbjct: 15304 caggtaatcagtaagtagctatgctccatct 15274



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                            
Query: 491      acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550
                |||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct: 19161530 acctgcaattcttgtgcctccatagtataaatttgtcatgaatacatcagggtaaactcc 19161471

                                                    
Query: 551      ttccccaaaaacatttttgcacaagtctaaatggta 586
                |||||||||||||||| |||||||||| ||||||||
Sbjct: 19161470 ttccccaaaaacatttctgcacaagtccaaatggta 19161435



 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                            
Query: 426      gatgatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatt 485
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 19162159 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 19162100

                            
Query: 486      ttagaacctgca 497
                || |||||||||
Sbjct: 19162099 ttcgaacctgca 19162088



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                            
Query: 332      accttcaatatttgaaggtgcttgagggcatccggagatatcagtgcaatgcccgcagtt 391
                ||||||||||| |||||| |||||||||||||| || | |||| ||||||| ||||| ||
Sbjct: 19162392 accttcaatatgtgaaggagcttgagggcatccagatagatcactgcaatgtccgcaatt 19162333

                                          
Query: 392      gctgcactcaattaagtatgatggca 417
                ||||||||||||||||||||| ||||
Sbjct: 19162332 gctgcactcaattaagtatgacggca 19162307



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                            
Query: 490      aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549
                |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| |
Sbjct: 19171187 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 19171128

                                                     
Query: 550      cttccccaaaaacatttttgcacaagtctaaatggta 586
                |||| ||||| |||||| |||| | ||| ||||||||
Sbjct: 19171127 cttcaccaaagacatttctgcataggtccaaatggta 19171091



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 234      ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293
                ||||| ||||| |||||||| | ||| |  || |||||||| ||||||||||| ||||||
Sbjct: 19162701 ccttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttact 19162642

                                       
Query: 294      ttgttcactgcttctggggatga 316
                |||||||| |||||||| |||||
Sbjct: 19162641 ttgttcacagcttctggagatga 19162619



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 429      gatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatttta 488
                |||||||| || || |||||||||||||| ||||||||||||||||  || || ||||||
Sbjct: 19171542 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 19171483

                         
Query: 489      gaacctgca 497
                ||| |||||
Sbjct: 19171482 gaagctgca 19171474



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 175      caggtgatcagtaggtagctatgctccatct 205
                ||||| ||||||| |||||||||||||||||
Sbjct: 19162960 caggtaatcagtaagtagctatgctccatct 19162930



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                            
Query: 491      acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550
                |||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct: 19172806 acctgcaattcttgtgcctccatagtataaatttgtcatgaatacatcagggtaaactcc 19172747

                                                    
Query: 551      ttccccaaaaacatttttgcacaagtctaaatggta 586
                |||||||||||||||| |||||||||| ||||||||
Sbjct: 19172746 ttccccaaaaacatttctgcacaagtccaaatggta 19172711



 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                            
Query: 426      gatgatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatt 485
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 19173435 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 19173376

                            
Query: 486      ttagaacctgca 497
                || |||||||||
Sbjct: 19173375 ttcgaacctgca 19173364



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                            
Query: 332      accttcaatatttgaaggtgcttgagggcatccggagatatcagtgcaatgcccgcagtt 391
                ||||||||||| |||||| |||||||||||||| || | |||| ||||||| ||||| ||
Sbjct: 19173668 accttcaatatgtgaaggagcttgagggcatccagatagatcactgcaatgtccgcaatt 19173609

                                          
Query: 392      gctgcactcaattaagtatgatggca 417
                ||||||||||||||||||||| ||||
Sbjct: 19173608 gctgcactcaattaagtatgacggca 19173583



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                            
Query: 490      aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549
                |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| |
Sbjct: 19182463 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 19182404

                                                     
Query: 550      cttccccaaaaacatttttgcacaagtctaaatggta 586
                |||| ||||| |||||| |||| | ||| ||||||||
Sbjct: 19182403 cttcaccaaagacatttctgcataggtccaaatggta 19182367



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 234      ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293
                ||||| ||||| |||||||| | ||| |  || |||||||| ||||||||||| ||||||
Sbjct: 19173977 ccttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttact 19173918

                                       
Query: 294      ttgttcactgcttctggggatga 316
                |||||||| |||||||| |||||
Sbjct: 19173917 ttgttcacagcttctggagatga 19173895



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 429      gatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatttta 488
                |||||||| || || |||||||||||||| ||||||||||||||||  || || ||||||
Sbjct: 19182818 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 19182759

                         
Query: 489      gaacctgca 497
                ||| |||||
Sbjct: 19182758 gaagctgca 19182750



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 175      caggtgatcagtaggtagctatgctccatct 205
                ||||| ||||||| |||||||||||||||||
Sbjct: 19174236 caggtaatcagtaagtagctatgctccatct 19174206



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>dbj|AK073197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022B10, full
            insert sequence
          Length = 2075

 Score =  113 bits (57), Expect = 7e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                        
Query: 490  aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549
            |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| |
Sbjct: 1273 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 1214

                                                                        
Query: 550  cttccccaaaaacatttttgcacaagtctaaatggtatcttgtatcgatctttgtagagc 609
            |||| ||||| |||||| |||| | ||| |||||||| | ||||| ||||| ||||||||
Sbjct: 1213 cttcaccaaagacatttctgcataggtccaaatggtaccctgtattgatctctgtagagc 1154

             
Query: 610  g 610
            |
Sbjct: 1153 g 1153



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 402  attaagtatgatggcagttcttccgatgatttctgcttagaagcatggcgccatgggtct 461
            |||| |||||||||||  | || ||| |||||||| || || |||||||||||||| |||
Sbjct: 1655 attatgtatgatggcatatatttcgacgatttctgtttcgaggcatggcgccatggatct 1596

                                                
Query: 462  tgagagccatttgcaaaaacaattttagaacctgca 497
            |||||||||||||  || || ||||||||| |||||
Sbjct: 1595 tgagagccatttgtgaacactattttagaagctgca 1560



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>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence
          Length = 106246

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 234   ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293
             ||||| |||||||||||||| ||||||||||  |||||||| || || ||||| ||||||
Sbjct: 19982 ccttgctcttggcattctgatagccacaggtaaatgtgatcgacaatttgctttcttact 19923

                    
Query: 294   ttgttca 300
             || ||||
Sbjct: 19922 ttcttca 19916



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 231     cgtccttggtcttggcattctga 253
               |||||||||||||||||||||||
Sbjct: 2236813 cgtccttggtcttggcattctga 2236791



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 467     gccatttgcaaaaacaatttta 488
               ||||||||||||||||||||||
Sbjct: 6262294 gccatttgcaaaaacaatttta 6262315



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>emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124E07, complete
             sequence
          Length = 127181

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 467   gccatttgcaaaaacaatttta 488
             ||||||||||||||||||||||
Sbjct: 34845 gccatttgcaaaaacaatttta 34866



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>emb|AL606989.3|OSJN00120 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08,
             complete sequence
          Length = 121591

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 467   gccatttgcaaaaacaatttta 488
             ||||||||||||||||||||||
Sbjct: 31960 gccatttgcaaaaacaatttta 31981



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>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 245677

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 471   tttgcaaaaacaattttagaa 491
             |||||||||||||||||||||
Sbjct: 15037 tttgcaaaaacaattttagaa 15017



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>gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosome 5, complete sequence
          Length = 209986

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 242    ttggcattctgacagccacag 262
              |||||||||||||||||||||
Sbjct: 170361 ttggcattctgacagccacag 170381



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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 484     ttttagaacctgcaattcttg 504
               |||||||||||||||||||||
Sbjct: 1109040 ttttagaacctgcaattcttg 1109020



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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 472     ttgcaaaaacaattttagaac 492
               |||||||||||||||||||||
Sbjct: 2086729 ttgcaaaaacaattttagaac 2086709



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 285      ttccttactttgttcactgct 305
                |||||||||||||||||||||
Sbjct: 13725491 ttccttactttgttcactgct 13725471



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>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145118

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 285   ttccttactttgttcactgct 305
             |||||||||||||||||||||
Sbjct: 59092 ttccttactttgttcactgct 59072



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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 472     ttgcaaaaacaattttagaac 492
               |||||||||||||||||||||
Sbjct: 2195728 ttgcaaaaacaattttagaac 2195748



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 285      ttccttactttgttcactgct 305
                |||||||||||||||||||||
Sbjct: 13679771 ttccttactttgttcactgct 13679751



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>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 155451

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 285   ttccttactttgttcactgct 305
             |||||||||||||||||||||
Sbjct: 41150 ttccttactttgttcactgct 41130



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>ref|XM_415942.1| PREDICTED: Gallus gallus laminin B1 (LOC396478), mRNA
          Length = 2412

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  gtggtcaccgtgtcgcgtcc 235
            ||||||||||||||||||||
Sbjct: 2095 gtggtcaccgtgtcgcgtcc 2114



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>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 157107

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 474   gcaaaaacaattttagaacctgca 497
             ||||||||||| ||||||||||||
Sbjct: 61324 gcaaaaacaatattagaacctgca 61301



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>emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K10 on chromosome 22q13.1-13.2,
              complete sequence
          Length = 184180

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    atgtttgcctgcacaggtga 181
              ||||||||||||||||||||
Sbjct: 127203 atgtttgcctgcacaggtga 127222



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>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13,
             complete sequence
          Length = 166823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   aaacatttttgcacaagtct 578
             ||||||||||||||||||||
Sbjct: 58433 aaacatttttgcacaagtct 58414



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>gb|AC063923.21| Homo sapiens 3 BAC RP11-59E19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153448

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   catttgcaaaaacaatttta 488
             ||||||||||||||||||||
Sbjct: 53903 catttgcaaaaacaatttta 53884



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>gb|AC008114.25| Homo sapiens 12 BAC RP11-502N13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 126503

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   aaacatttttgcacaagtct 578
             ||||||||||||||||||||
Sbjct: 47714 aaacatttttgcacaagtct 47695



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>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8,
             complete sequence
          Length = 207382

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   atttgcaaaaacaattttag 489
             ||||||||||||||||||||
Sbjct: 89934 atttgcaaaaacaattttag 89915



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>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete sequence
          Length = 192460

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    gtggtcaccgtgtcgcgtcc 235
              ||||||||||||||||||||
Sbjct: 145599 gtggtcaccgtgtcgcgtcc 145618



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>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence
          Length = 112289

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   tataaatacaacagcagtgc 156
             ||||||||||||||||||||
Sbjct: 92772 tataaatacaacagcagtgc 92791



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>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 150001

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctatgctccatctgctcccc 212
             ||||||||||||||||||||
Sbjct: 42821 ctatgctccatctgctcccc 42802



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>emb|BX293540.5| Zebrafish DNA sequence from clone DKEY-255N2 in linkage group 8, complete
              sequence
          Length = 181168

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 564    tttttgcacaagtctaaatg 583
              ||||||||||||||||||||
Sbjct: 129353 tttttgcacaagtctaaatg 129372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,255,910
Number of Sequences: 3902068
Number of extensions: 5255910
Number of successful extensions: 99966
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99612
Number of HSP's gapped (non-prelim): 354
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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