| Clone Name | rbags39l14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.7), mRNA Length = 2369 Score = 426 bits (215), Expect = e-116 Identities = 383/439 (87%) Strand = Plus / Minus Query: 175 caggtgatcagtaggtagctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtc 234 ||||| ||||||| ||||||||||||||||| || ||| || | | | ||||| ||| Sbjct: 2047 caggtaatcagtaagtagctatgctccatctactgcccagcaatggctcattgtcgtgtc 1988 Query: 235 cttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttactt 294 |||| ||||| |||||||| | ||| | || |||||||| ||||||||||| ||||||| Sbjct: 1987 cttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttactt 1928 Query: 295 tgttcactgcttctggggatgagcatttggatgaatcaccttcaatatttgaaggtgctt 354 ||||||| |||||||| ||||| || || || || ||||||||||||| |||||| |||| Sbjct: 1927 tgttcacagcttctggagatgaacaattagacgagtcaccttcaatatgtgaaggagctt 1868 Query: 355 gagggcatccggagatatcagtgcaatgcccgcagttgctgcactcaattaagtatgatg 414 |||||||||| || | |||| ||||||| ||||| ||||||||||||||||||||||| | Sbjct: 1867 gagggcatccagatagatcactgcaatgtccgcaattgctgcactcaattaagtatgacg 1808 Query: 415 gcagttcttccgatgatttctgcttagaagcatggcgccatgggtcttgagagccatttg 474 ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 1807 gcaattcttttgatgatttctgcttagaagcatggcgccatggatcttgagagccgtttg 1748 Query: 475 caaaaacaattttagaacctgcaattcttgtgcctccatagtataagtttgtcatggaca 534 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | | Sbjct: 1747 caaaaacaattttcgaacctgcaattcttgtgcctccatagtataaatttgtcatgaata 1688 Query: 535 catcaggataaactccttccccaaaaacatttttgcacaagtctaaatggtatcttgtat 594 ||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| | Sbjct: 1687 catcagggtaaactccttccccaaaaacatttctgcacaagtccaaatggtaccttgtgt 1628 Query: 595 cgatctttgtagagcggac 613 | ||||||| ||| ||||| Sbjct: 1627 caatctttgcagaacggac 1609
>dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G22, full insert sequence Length = 1986 Score = 426 bits (215), Expect = e-116 Identities = 383/439 (87%) Strand = Plus / Minus Query: 175 caggtgatcagtaggtagctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtc 234 ||||| ||||||| ||||||||||||||||| || ||| || | | | ||||| ||| Sbjct: 1652 caggtaatcagtaagtagctatgctccatctactgcccagcaatggctcattgtcgtgtc 1593 Query: 235 cttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttactt 294 |||| ||||| |||||||| | ||| | || |||||||| ||||||||||| ||||||| Sbjct: 1592 cttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttactt 1533 Query: 295 tgttcactgcttctggggatgagcatttggatgaatcaccttcaatatttgaaggtgctt 354 ||||||| |||||||| ||||| || || || || ||||||||||||| |||||| |||| Sbjct: 1532 tgttcacagcttctggagatgaacaattagacgagtcaccttcaatatgtgaaggagctt 1473 Query: 355 gagggcatccggagatatcagtgcaatgcccgcagttgctgcactcaattaagtatgatg 414 |||||||||| || | |||| ||||||| ||||| ||||||||||||||||||||||| | Sbjct: 1472 gagggcatccagatagatcactgcaatgtccgcaattgctgcactcaattaagtatgacg 1413 Query: 415 gcagttcttccgatgatttctgcttagaagcatggcgccatgggtcttgagagccatttg 474 ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 1412 gcaattcttttgatgatttctgcttagaagcatggcgccatggatcttgagagccgtttg 1353 Query: 475 caaaaacaattttagaacctgcaattcttgtgcctccatagtataagtttgtcatggaca 534 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | | Sbjct: 1352 caaaaacaattttcgaacctgcaattcttgtgcctccatagtataaatttgtcatgaata 1293 Query: 535 catcaggataaactccttccccaaaaacatttttgcacaagtctaaatggtatcttgtat 594 ||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| | Sbjct: 1292 catcagggtaaactccttccccaaaaacatttctgcacaagtccaaatggtaccttgtgt 1233 Query: 595 cgatctttgtagagcggac 613 | ||||||| ||| ||||| Sbjct: 1232 caatctttgcagaacggac 1214
>gb|BT018927.1| Zea mays clone Contig55.F mRNA sequence Length = 1321 Score = 422 bits (213), Expect = e-115 Identities = 363/413 (87%) Strand = Plus / Minus Query: 191 agctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtccttggtcttggcattc 250 |||||||||||||||||| ||| || | | || |||| ||||||| ||||||||||| Sbjct: 865 agctatgctccatctgcttcccagccatggctccttgtcatgtccttgctcttggcattc 806 Query: 251 tgacagccacaggtcgatgtgatccacgatctgcttccttactttgttcactgcttctgg 310 ||| ||||||||||| |||||||| || |||| ||||||||||||||||| ||||| || Sbjct: 805 tgatagccacaggtcaatgtgatcgacaatctccttccttactttgttcagagcttcggg 746 Query: 311 ggatgagcatttggatgaatcaccttcaatatttgaaggtgcttgagggcatccggagat 370 | |||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct: 745 aggtgagcacttggatgaatcaccttcaatgtttgaaggagcttgagggcatccagagag 686 Query: 371 atcagtgcaatgcccgcagttgctgcactcaattaagtatgatggcagttcttccgatga 430 |||| |||| || |||||||| |||||||||||| ||||||||||| ||| || ||||| Sbjct: 685 atcactgcagtgtccgcagttcttgcactcaattaggtatgatggcaattcgtctgatga 626 Query: 431 tttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaattttaga 490 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 625 tttctgcttagaagcgtggcgccatgggtcttgagatccatttgcaaaaacaattttaga 566 Query: 491 acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550 ||||||||||| ||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct: 565 acctgcaattcctgtgcctccatagtataagtttgtcataaagacatcagggtagactcc 506 Query: 551 ttccccaaaaacatttttgcacaagtctaaatggtatcttgtatcgatctttg 603 ||| || ||||||||| |||||||||| |||||||| || || |||||||||| Sbjct: 505 ttcgccgaaaacatttctgcacaagtccaaatggtacctcgtgtcgatctttg 453
>gb|BT024005.1| Zea mays clone EL01N0403G06 mRNA sequence Length = 1602 Score = 414 bits (209), Expect = e-112 Identities = 362/413 (87%) Strand = Plus / Minus Query: 191 agctatgctccatctgctcccctgcgtggtcaccgtgtcgcgtccttggtcttggcattc 250 |||||||||||||||||| ||| || | | || |||| ||||||| ||||||||||| Sbjct: 1363 agctatgctccatctgcttcccagccatggctccttgtcatgtccttgctcttggcattc 1304 Query: 251 tgacagccacaggtcgatgtgatccacgatctgcttccttactttgttcactgcttctgg 310 ||| ||||||||||| |||||||| || |||| ||||||||||||||||| ||||| || Sbjct: 1303 tgatagccacaggtcaatgtgatcgacaatctccttccttactttgttcagagcttcggg 1244 Query: 311 ggatgagcatttggatgaatcaccttcaatatttgaaggtgcttgagggcatccggagat 370 | |||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct: 1243 aggtgagcacttggatgaatcaccttcaatgtttgaaggagcttgagggcatccagagag 1184 Query: 371 atcagtgcaatgcccgcagttgctgcactcaattaagtatgatggcagttcttccgatga 430 |||| |||| || |||||||| |||||||||||| ||||||||||| ||| || ||||| Sbjct: 1183 atcactgcagtgtccgcagttcttgcactcaattaggtatgatggcaattcgtctgatga 1124 Query: 431 tttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaattttaga 490 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1123 tttctgcttagaagcgtggcgccatgggtcttgagatccatttgcaaaaacaattttaga 1064 Query: 491 acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550 ||||||||||| ||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct: 1063 acctgcaattcctgtgcctccatagtataagtttgtcataaagacatcagggtagactcc 1004 Query: 551 ttccccaaaaacatttttgcacaagtctaaatggtatcttgtatcgatctttg 603 ||| || | ||||||| |||||||||| |||||||| || || |||||||||| Sbjct: 1003 ttcgccgagaacatttctgcacaagtccaaatggtacctcgtgtcgatctttg 951
>ref|NM_197310.1| Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.8), mRNA Length = 1509 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Minus Query: 402 attaagtatgatggcagttcttccgatgatttctgcttagaagcatggcgccatgggtct 461 |||| ||||||||||| | || ||| |||||||| || || |||||||||||||| ||| Sbjct: 1325 attatgtatgatggcatatatttcgacgatttctgtttcgaggcatggcgccatggatct 1266 Query: 462 tgagagccatttgcaaaaacaattttagaacctgcaattcttgtgcctccatagtataag 521 ||||||||||||| || || ||||||||| | ||||||||||||||||| || || ||| Sbjct: 1265 tgagagccatttgtgaacactattttagaagcagcaattcttgtgcctccgtaatacaag 1206 Query: 522 tttgtcatggacacatcaggataaactccttccccaaaaacatttttgcacaagtctaaa 581 ||||||||| |||||||||||||||| ||||| ||||| |||||| |||| | ||| ||| Sbjct: 1205 tttgtcatgaacacatcaggataaacaccttcaccaaagacatttctgcataggtccaaa 1146 Query: 582 tggtatcttgtatcgatctttgtagagcg 610 ||||| | ||||| ||||| ||||||||| Sbjct: 1145 tggtaccctgtattgatctctgtagagcg 1117
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 143 bits (72), Expect = 8e-31 Identities = 90/96 (93%) Strand = Plus / Minus Query: 491 acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550 |||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| Sbjct: 13874 acctgcaattcttgtgcctccatagtataaatttgtcatgaatacatcagggtaaactcc 13815 Query: 551 ttccccaaaaacatttttgcacaagtctaaatggta 586 |||||||||||||||| |||||||||| |||||||| Sbjct: 13814 ttccccaaaaacatttctgcacaagtccaaatggta 13779 Score = 119 bits (60), Expect = 1e-23 Identities = 69/72 (95%) Strand = Plus / Minus Query: 426 gatgatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatt 485 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 14503 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 14444 Query: 486 ttagaacctgca 497 || ||||||||| Sbjct: 14443 ttcgaacctgca 14432 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 332 accttcaatatttgaaggtgcttgagggcatccggagatatcagtgcaatgcccgcagtt 391 ||||||||||| |||||| |||||||||||||| || | |||| ||||||| ||||| || Sbjct: 14736 accttcaatatgtgaaggagcttgagggcatccagatagatcactgcaatgtccgcaatt 14677 Query: 392 gctgcactcaattaagtatgatggca 417 ||||||||||||||||||||| |||| Sbjct: 14676 gctgcactcaattaagtatgacggca 14651 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 490 aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549 |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| | Sbjct: 23531 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 23472 Query: 550 cttccccaaaaacatttttgcacaagtctaaatggta 586 |||| ||||| |||||| |||| | ||| |||||||| Sbjct: 23471 cttcaccaaagacatttctgcataggtccaaatggta 23435 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 234 ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293 ||||| ||||| |||||||| | ||| | || |||||||| ||||||||||| |||||| Sbjct: 15045 ccttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttact 14986 Query: 294 ttgttcactgcttctggggatga 316 |||||||| |||||||| ||||| Sbjct: 14985 ttgttcacagcttctggagatga 14963 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 429 gatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatttta 488 |||||||| || || |||||||||||||| |||||||||||||||| || || |||||| Sbjct: 23886 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 23827 Query: 489 gaacctgca 497 ||| ||||| Sbjct: 23826 gaagctgca 23818 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 175 caggtgatcagtaggtagctatgctccatct 205 ||||| ||||||| ||||||||||||||||| Sbjct: 15304 caggtaatcagtaagtagctatgctccatct 15274
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 143 bits (72), Expect = 8e-31 Identities = 90/96 (93%) Strand = Plus / Minus Query: 491 acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550 |||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| Sbjct: 19161530 acctgcaattcttgtgcctccatagtataaatttgtcatgaatacatcagggtaaactcc 19161471 Query: 551 ttccccaaaaacatttttgcacaagtctaaatggta 586 |||||||||||||||| |||||||||| |||||||| Sbjct: 19161470 ttccccaaaaacatttctgcacaagtccaaatggta 19161435 Score = 119 bits (60), Expect = 1e-23 Identities = 69/72 (95%) Strand = Plus / Minus Query: 426 gatgatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatt 485 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 19162159 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 19162100 Query: 486 ttagaacctgca 497 || ||||||||| Sbjct: 19162099 ttcgaacctgca 19162088 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 332 accttcaatatttgaaggtgcttgagggcatccggagatatcagtgcaatgcccgcagtt 391 ||||||||||| |||||| |||||||||||||| || | |||| ||||||| ||||| || Sbjct: 19162392 accttcaatatgtgaaggagcttgagggcatccagatagatcactgcaatgtccgcaatt 19162333 Query: 392 gctgcactcaattaagtatgatggca 417 ||||||||||||||||||||| |||| Sbjct: 19162332 gctgcactcaattaagtatgacggca 19162307 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 490 aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549 |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| | Sbjct: 19171187 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 19171128 Query: 550 cttccccaaaaacatttttgcacaagtctaaatggta 586 |||| ||||| |||||| |||| | ||| |||||||| Sbjct: 19171127 cttcaccaaagacatttctgcataggtccaaatggta 19171091 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 234 ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293 ||||| ||||| |||||||| | ||| | || |||||||| ||||||||||| |||||| Sbjct: 19162701 ccttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttact 19162642 Query: 294 ttgttcactgcttctggggatga 316 |||||||| |||||||| ||||| Sbjct: 19162641 ttgttcacagcttctggagatga 19162619 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 429 gatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatttta 488 |||||||| || || |||||||||||||| |||||||||||||||| || || |||||| Sbjct: 19171542 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 19171483 Query: 489 gaacctgca 497 ||| ||||| Sbjct: 19171482 gaagctgca 19171474 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 175 caggtgatcagtaggtagctatgctccatct 205 ||||| ||||||| ||||||||||||||||| Sbjct: 19162960 caggtaatcagtaagtagctatgctccatct 19162930
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 143 bits (72), Expect = 8e-31 Identities = 90/96 (93%) Strand = Plus / Minus Query: 491 acctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactcc 550 |||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| Sbjct: 19172806 acctgcaattcttgtgcctccatagtataaatttgtcatgaatacatcagggtaaactcc 19172747 Query: 551 ttccccaaaaacatttttgcacaagtctaaatggta 586 |||||||||||||||| |||||||||| |||||||| Sbjct: 19172746 ttccccaaaaacatttctgcacaagtccaaatggta 19172711 Score = 119 bits (60), Expect = 1e-23 Identities = 69/72 (95%) Strand = Plus / Minus Query: 426 gatgatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatt 485 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 19173435 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 19173376 Query: 486 ttagaacctgca 497 || ||||||||| Sbjct: 19173375 ttcgaacctgca 19173364 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 332 accttcaatatttgaaggtgcttgagggcatccggagatatcagtgcaatgcccgcagtt 391 ||||||||||| |||||| |||||||||||||| || | |||| ||||||| ||||| || Sbjct: 19173668 accttcaatatgtgaaggagcttgagggcatccagatagatcactgcaatgtccgcaatt 19173609 Query: 392 gctgcactcaattaagtatgatggca 417 ||||||||||||||||||||| |||| Sbjct: 19173608 gctgcactcaattaagtatgacggca 19173583 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 490 aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549 |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| | Sbjct: 19182463 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 19182404 Query: 550 cttccccaaaaacatttttgcacaagtctaaatggta 586 |||| ||||| |||||| |||| | ||| |||||||| Sbjct: 19182403 cttcaccaaagacatttctgcataggtccaaatggta 19182367 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 234 ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293 ||||| ||||| |||||||| | ||| | || |||||||| ||||||||||| |||||| Sbjct: 19173977 ccttgctcttgacattctgataaccataaatcaatgtgatcgacgatctgctttcttact 19173918 Query: 294 ttgttcactgcttctggggatga 316 |||||||| |||||||| ||||| Sbjct: 19173917 ttgttcacagcttctggagatga 19173895 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 429 gatttctgcttagaagcatggcgccatgggtcttgagagccatttgcaaaaacaatttta 488 |||||||| || || |||||||||||||| |||||||||||||||| || || |||||| Sbjct: 19182818 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 19182759 Query: 489 gaacctgca 497 ||| ||||| Sbjct: 19182758 gaagctgca 19182750 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 175 caggtgatcagtaggtagctatgctccatct 205 ||||| ||||||| ||||||||||||||||| Sbjct: 19174236 caggtaatcagtaagtagctatgctccatct 19174206
>dbj|AK073197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022B10, full insert sequence Length = 2075 Score = 113 bits (57), Expect = 7e-22 Identities = 105/121 (86%) Strand = Plus / Minus Query: 490 aacctgcaattcttgtgcctccatagtataagtttgtcatggacacatcaggataaactc 549 |||| ||||||||||||||||| || || |||||||||||| |||||||||||||||| | Sbjct: 1273 aaccagcaattcttgtgcctccgtaatacaagtttgtcatgaacacatcaggataaacac 1214 Query: 550 cttccccaaaaacatttttgcacaagtctaaatggtatcttgtatcgatctttgtagagc 609 |||| ||||| |||||| |||| | ||| |||||||| | ||||| ||||| |||||||| Sbjct: 1213 cttcaccaaagacatttctgcataggtccaaatggtaccctgtattgatctctgtagagc 1154 Query: 610 g 610 | Sbjct: 1153 g 1153 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 402 attaagtatgatggcagttcttccgatgatttctgcttagaagcatggcgccatgggtct 461 |||| ||||||||||| | || ||| |||||||| || || |||||||||||||| ||| Sbjct: 1655 attatgtatgatggcatatatttcgacgatttctgtttcgaggcatggcgccatggatct 1596 Query: 462 tgagagccatttgcaaaaacaattttagaacctgca 497 ||||||||||||| || || ||||||||| ||||| Sbjct: 1595 tgagagccatttgtgaacactattttagaagctgca 1560
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 234 ccttggtcttggcattctgacagccacaggtcgatgtgatccacgatctgcttccttact 293 ||||| |||||||||||||| |||||||||| |||||||| || || ||||| |||||| Sbjct: 19982 ccttgctcttggcattctgatagccacaggtaaatgtgatcgacaatttgctttcttact 19923 Query: 294 ttgttca 300 || |||| Sbjct: 19922 ttcttca 19916
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 231 cgtccttggtcttggcattctga 253 ||||||||||||||||||||||| Sbjct: 2236813 cgtccttggtcttggcattctga 2236791
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 467 gccatttgcaaaaacaatttta 488 |||||||||||||||||||||| Sbjct: 6262294 gccatttgcaaaaacaatttta 6262315
>emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124E07, complete sequence Length = 127181 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 467 gccatttgcaaaaacaatttta 488 |||||||||||||||||||||| Sbjct: 34845 gccatttgcaaaaacaatttta 34866
>emb|AL606989.3|OSJN00120 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033G08, complete sequence Length = 121591 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 467 gccatttgcaaaaacaatttta 488 |||||||||||||||||||||| Sbjct: 31960 gccatttgcaaaaacaatttta 31981
>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 245677 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 tttgcaaaaacaattttagaa 491 ||||||||||||||||||||| Sbjct: 15037 tttgcaaaaacaattttagaa 15017
>gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosome 5, complete sequence Length = 209986 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 ttggcattctgacagccacag 262 ||||||||||||||||||||| Sbjct: 170361 ttggcattctgacagccacag 170381
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 ttttagaacctgcaattcttg 504 ||||||||||||||||||||| Sbjct: 1109040 ttttagaacctgcaattcttg 1109020
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 ttgcaaaaacaattttagaac 492 ||||||||||||||||||||| Sbjct: 2086729 ttgcaaaaacaattttagaac 2086709
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ttccttactttgttcactgct 305 ||||||||||||||||||||| Sbjct: 13725491 ttccttactttgttcactgct 13725471
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ttccttactttgttcactgct 305 ||||||||||||||||||||| Sbjct: 59092 ttccttactttgttcactgct 59072
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 ttgcaaaaacaattttagaac 492 ||||||||||||||||||||| Sbjct: 2195728 ttgcaaaaacaattttagaac 2195748
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ttccttactttgttcactgct 305 ||||||||||||||||||||| Sbjct: 13679771 ttccttactttgttcactgct 13679751
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ttccttactttgttcactgct 305 ||||||||||||||||||||| Sbjct: 41150 ttccttactttgttcactgct 41130
>ref|XM_415942.1| PREDICTED: Gallus gallus laminin B1 (LOC396478), mRNA Length = 2412 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gtggtcaccgtgtcgcgtcc 235 |||||||||||||||||||| Sbjct: 2095 gtggtcaccgtgtcgcgtcc 2114
>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 157107 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 474 gcaaaaacaattttagaacctgca 497 ||||||||||| |||||||||||| Sbjct: 61324 gcaaaaacaatattagaacctgca 61301
>emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K10 on chromosome 22q13.1-13.2, complete sequence Length = 184180 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgtttgcctgcacaggtga 181 |||||||||||||||||||| Sbjct: 127203 atgtttgcctgcacaggtga 127222
>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13, complete sequence Length = 166823 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 aaacatttttgcacaagtct 578 |||||||||||||||||||| Sbjct: 58433 aaacatttttgcacaagtct 58414
>gb|AC063923.21| Homo sapiens 3 BAC RP11-59E19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153448 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 catttgcaaaaacaatttta 488 |||||||||||||||||||| Sbjct: 53903 catttgcaaaaacaatttta 53884
>gb|AC008114.25| Homo sapiens 12 BAC RP11-502N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126503 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 aaacatttttgcacaagtct 578 |||||||||||||||||||| Sbjct: 47714 aaacatttttgcacaagtct 47695
>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete sequence Length = 207382 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 atttgcaaaaacaattttag 489 |||||||||||||||||||| Sbjct: 89934 atttgcaaaaacaattttag 89915
>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete sequence Length = 192460 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gtggtcaccgtgtcgcgtcc 235 |||||||||||||||||||| Sbjct: 145599 gtggtcaccgtgtcgcgtcc 145618
>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence Length = 112289 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 tataaatacaacagcagtgc 156 |||||||||||||||||||| Sbjct: 92772 tataaatacaacagcagtgc 92791
>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 150001 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ctatgctccatctgctcccc 212 |||||||||||||||||||| Sbjct: 42821 ctatgctccatctgctcccc 42802
>emb|BX293540.5| Zebrafish DNA sequence from clone DKEY-255N2 in linkage group 8, complete sequence Length = 181168 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 tttttgcacaagtctaaatg 583 |||||||||||||||||||| Sbjct: 129353 tttttgcacaagtctaaatg 129372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,255,910 Number of Sequences: 3902068 Number of extensions: 5255910 Number of successful extensions: 99966 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99612 Number of HSP's gapped (non-prelim): 354 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)