>Y220_SILPO (Q5LX20) UPF0247 protein SPO0220|
          Length = 156

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 644 LTRLFDETSKALGGAPAKKREIEDNSKK-IGALFAKLNTGDISPNVSSKLIQMCSALDSS 468
           LTR FD T +ALG  PA+  E+ED     +GA  A L     +  V   L +    L S 
Sbjct: 24  LTR-FDRTGRALGLGPARVVEVEDKKNAGMGAEAALLRKALPAGAVLCTLDERGKQLSSP 82

Query: 467 DFATAM 450
           DFA  M
Sbjct: 83  DFADRM 88

>SRP54_YARLI (Q99150) Signal recognition particle 54 kDa protein homolog (SRP54)|
          Length = 536

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 581 IEDNSKKIGALFAKLNTG-DISPNVSSKLIQMCSALDSSD 465
           +ED  K+I   FA L+ G DI   + + L ++CSAL  SD
Sbjct: 3   LEDLGKRINGAFANLSKGGDIDEALDAMLKEVCSALLESD 42

>DMD_CAEEL (Q9TW65) Dystrophin-1|
          Length = 3674

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 102 PTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSR 242
           P TPP   H    + GK+ E S     R  +  S+++ SG+  +  R
Sbjct: 279 PQTPPTAHHQAMLDRGKSFEQSAEGEVRSRKSSSSSQKSGKSKKARR 325

>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike|
           glycoprotein)
          Length = 681

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 96  PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTR--PLSATRSSGRVDRRSRITSLCTPTL 269
           P+P+TP ++ +      G   E +K N T      P + T  S     ++  ++L   ++
Sbjct: 300 PQPSTPQQEGNNTDHSQGTVTEPNKTNTTAQPSMPPHNTTAISTNNTSKNNFSTL---SV 356

Query: 270 QIANTNNFDNQ 302
            + NT N+D Q
Sbjct: 357 SLQNTTNYDTQ 367

>CCMA_VIBVY (Q7MIR0) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 205

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 596 RVRLPRLWMSHQIVW 640
           RV L RLW+SHQI+W
Sbjct: 138 RVALARLWLSHQILW 152

>CCMA_VIBVU (Q8DB62) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 205

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 596 RVRLPRLWMSHQIVW 640
           RV L RLW+SHQI+W
Sbjct: 138 RVALARLWLSHQILW 152

>PRELP_MOUSE (Q9JK53) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 378

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 22  LINSRVRKMDQLV*QTK*PLTTYNFQNQQHPQRTRILLQRNMEKLLSRQNVMS 180
           L N+R+RK+DQ V   K P   + +  +   +     L RN+E+L   QN++S
Sbjct: 129 LDNNRIRKVDQRV-LGKLPSLAFLYMEKNQLEEVPSALPRNLEQLRLSQNLIS 180

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +3

Query: 75  TSYNL*FPKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSL 254
           TS  L  PKP   P+   P  +++ K     K      TRP S +RS  R   RSR  S 
Sbjct: 241 TSDILKVPKPEPIPEPKEPSPEKNSK-----KEKEKEKTRPRSRSRSKSRSRTRSRSPSH 295

Query: 255 CTP 263
             P
Sbjct: 296 TRP 298

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +3

Query: 75  TSYNL*FPKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSL 254
           TS  L  PKP   P+   P  +++ K     K      TRP S +RS  R   RSR  S 
Sbjct: 241 TSDILKVPKPEPIPEPKEPSPEKNSK-----KEKEKEKTRPRSRSRSKSRSRTRSRSPSH 295

Query: 255 CTP 263
             P
Sbjct: 296 TRP 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,365,931
Number of Sequences: 219361
Number of extensions: 1824471
Number of successful extensions: 5073
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5071
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)