ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39l04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464665.1| Oryza sativa (japonica cultivar-group), mRNA 224 3e-55
2gb|BT018648.1| Zea mays clone EL01N0505E05.d mRNA sequence 180 4e-42
3gb|BT017195.1| Zea mays clone EL01N0371D07.c mRNA sequence 180 4e-42
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
5dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
6gb|AC004882.3| Homo sapiens PAC clone RP1-76B20 from 22, complet... 44 0.64
7gb|AY633762.1| Mus musculus relaxin-3/INSL7 receptor 1 (GPCR135)... 42 2.5
8gb|AC102219.11| Mus musculus chromosome 15, clone RP24-96K14, co... 42 2.5
9ref|XM_527205.1| PREDICTED: Pan troglodytes similar to procollag... 42 2.5
10gb|AY170825.1| Mus musculus G protein-coupled receptor (Salpr) m... 42 2.5
11gb|BC053073.1| Mus musculus relaxin family peptide receptor 3, m... 42 2.5
12gb|AF315603.1| Homo sapiens DNA polymerase kappa (POLK) and Good... 42 2.5
13gb|AF315601.1| Homo sapiens DNA polymerase kappa (POLK) mRNA, 5'UTR 42 2.5
14ref|NM_178717.2| Mus musculus relaxin family peptide receptor 3 ... 42 2.5
15gb|AC116341.2| Homo sapiens chromosome 5 clone RP11-144A5, compl... 42 2.5
16dbj|AK096854.1| Homo sapiens cDNA FLJ39535 fis, clone PUAEN20055... 42 2.5
17gb|AY273797.1| Homo sapiens polymerase (DNA directed) kappa (POL... 42 2.5
18dbj|AK046367.1| Mus musculus adult male corpora quadrigemina cDN... 42 2.5
19dbj|AK084001.1| Mus musculus 12 days embryo spinal ganglion cDNA... 42 2.5
20dbj|AK086419.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 42 2.5
21dbj|AK043414.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 2.5
22emb|AL929110.10| Mouse DNA sequence from clone RP23-275P20 on ch... 42 2.5
23dbj|AB036934.1| Homo sapiens GPBP, DINB1 genes for Thr/Ser kinas... 42 2.5
24gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 9.9
25ref|XM_989473.1| PREDICTED: Mus musculus RIKEN cDNA 2900075B16 g... 40 9.9
26ref|XM_357872.5| PREDICTED: Mus musculus RIKEN cDNA 2900075B16 g... 40 9.9
27emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 9.9
28emb|AL035246.13|HS998G20 Human DNA sequence from clone RP5-998G2... 40 9.9
29gb|AF318313.1| Homo sapiens DNA polymerase kappa (POLK) mRNA, pa... 40 9.9
30gb|AC021059.25| Homo sapiens 3 BAC RP11-464E15 (Roswell Park Can... 40 9.9
31dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 9.9
32gb|AE011774.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 9.9
33gb|AE012237.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 9.9
34gb|AC113364.2| Homo sapiens chromosome 5 clone RP11-100D19, comp... 40 9.9
35gb|AC094088.3| Homo sapiens chromosome 5 clone CTD-2180L22, comp... 40 9.9
36ref|XM_692322.1| PREDICTED: Danio rerio similar to NOD3 protein ... 40 9.9
37gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, com... 40 9.9
38gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 9.9
39dbj|AK019353.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 9.9
40ref|XM_344525.2| PREDICTED: Rattus norvegicus similar to EF hand... 40 9.9
41gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, com... 40 9.9
42gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 9.9
43gb|AC140948.1| Gallus gallus BAC clone TAM31-60A4 from chromosom... 40 9.9
44emb|AJ411801.1|CAR411801 Cicer arietinum Ty3-gypsy like Retrotra... 40 9.9 
>ref|XM_464665.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1419

 Score =  224 bits (113), Expect = 3e-55
 Identities = 296/357 (82%)
 Strand = Plus / Minus

                                                                        
Query: 369  gctgctttcctcacaaacagcgctatgaagaatccctcgaggtcatcctcagggtctgtc 428
            |||||||||||||| |||| || ||||||||| ||||| ||| | ||||| ||||| |||
Sbjct: 1268 gctgctttcctcacgaacaacgatatgaagaagccctccaggccgtcctccgggtccgtc 1209

                                                                        
Query: 429  cgaagcaaatgctcggctccgtcgaagactggaaggccacggcgcctccattgagggaat 488
            ||||||| |||||| | ||| || ||||| || || |||||||| | |||||||||||||
Sbjct: 1208 cgaagcagatgctcagatccttcaaagacggggagaccacggcgtcgccattgagggaat 1149

                                                                        
Query: 489  ggggtagagagctcgaaacctagtgatgaagctaaaggcagcacagagctgacgacgtcc 548
            || |||| ||||||||| || || ||||| || || ||||| || ||||| |||||||||
Sbjct: 1148 ggagtagcgagctcgaatccgagcgatgacgccaatggcaggacggagctcacgacgtcc 1089

                                                                        
Query: 549  tcattctctgcttggtgtattgaacatgtgctgtagaccaatctctctaccgagggaaat 608
            || ||||| |||||||| ||||| || ||||||||||||| |||||| || ||||| |||
Sbjct: 1088 tcgttctcagcttggtggattgagcaggtgctgtagaccactctctccacagaggggaat 1029

                                                                        
Query: 609  gatagagcatgtgagagagctttccgctgaaaggcggacagtttcctaattcttgcgctt 668
            || |||||||||||||| ||||||| ||| |||||||| |||||||| || ||||  || 
Sbjct: 1028 gacagagcatgtgagagcgctttcctctggaaggcggagagtttccttatccttgaactc 969

                                                                     
Query: 669  gaacctgcatcaccctgatcatctatagaatgtgaaggaagcaagtggtcgagtctc 725
            | || ||||||| |||||| | || | || || ||||| ||||| ||||| ||||||
Sbjct: 968  gtacttgcatcatcctgattacctcttgagtgcgaagggagcaaatggtcaagtctc 912
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>gb|BT018648.1| Zea mays clone EL01N0505E05.d mRNA sequence
          Length = 1633

 Score =  180 bits (91), Expect = 4e-42
 Identities = 280/343 (81%)
 Strand = Plus / Minus

                                                                        
Query: 370  ctgctttcctcacaaacagcgctatgaagaatccctcgaggtcatcctcagggtctgtcc 429
            |||||||||| |||||||  || |||||||| ||||| ||| |||| ||||| || ||||
Sbjct: 1274 ctgctttcctgacaaacaatgcaatgaagaagccctccaggccatcttcaggatccgtcc 1215

                                                                        
Query: 430  gaagcaaatgctcggctccgtcgaagactggaaggccacggcgcctccattgagggaatg 489
            |||||||||| || | ||| | ||| |||||||||||||||||   ||| |||||||| |
Sbjct: 1214 gaagcaaatgttcagatccttggaaaactggaaggccacggcggtgccactgagggaacg 1155

                                                                        
Query: 490  gggtagagagctcgaaacctagtgatgaagctaaaggcagcacagagctgacgacgtcct 549
            | |||| |||||| || || || |||| |||||| ||||  |||||| | | ||| ||||
Sbjct: 1154 gtgtagcgagctcaaatccgagggatgtagctaagggcaagacagagtttatgacatcct 1095

                                                                        
Query: 550  cattctctgcttggtgtattgaacatgtgctgtagaccaatctctctaccgagggaaatg 609
            | |||||||| ||||| ||||| || || ||||||||||  ||||| || || |||||||
Sbjct: 1094 cgttctctgcctggtggattgagcaagtactgtagaccaccctctccactgacggaaatg 1035

                                                                        
Query: 610  atagagcatgtgagagagctttccgctgaaaggcggacagtttcctaattcttgcgcttg 669
            |||||||||| ||||||||||||  |||||| ||||| |||||| | |  |||| |||||
Sbjct: 1034 atagagcatgggagagagctttcttctgaaaagcggagagtttcatgacccttgagcttg 975

                                                       
Query: 670  aacctgcatcaccctgatcatctatagaatgtgaaggaagcaa 712
             ||| |||||| |||||  |||| |||||||||| ||||||||
Sbjct: 974  tacccgcatcatcctgactatctctagaatgtgagggaagcaa 932



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 248  catcctggacaatctcaaggagctgaatgccctga 282
            |||||||||||  |||||||||||||| |||||||
Sbjct: 1387 catcctggacagcctcaaggagctgaacgccctga 1353
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>gb|BT017195.1| Zea mays clone EL01N0371D07.c mRNA sequence
          Length = 806

 Score =  180 bits (91), Expect = 4e-42
 Identities = 280/343 (81%)
 Strand = Plus / Minus

                                                                       
Query: 370 ctgctttcctcacaaacagcgctatgaagaatccctcgaggtcatcctcagggtctgtcc 429
           |||||||||| |||||||  || |||||||| ||||| ||| |||| ||||| || ||||
Sbjct: 460 ctgctttcctgacaaacaatgcaatgaagaagccctccaggccatcttcaggatccgtcc 401

                                                                       
Query: 430 gaagcaaatgctcggctccgtcgaagactggaaggccacggcgcctccattgagggaatg 489
           |||||||||| || | ||| | ||| |||||||||||||||||   ||| |||||||| |
Sbjct: 400 gaagcaaatgttcagatccttggaaaactggaaggccacggcggtgccactgagggaacg 341

                                                                       
Query: 490 gggtagagagctcgaaacctagtgatgaagctaaaggcagcacagagctgacgacgtcct 549
           | |||| |||||| || || || |||| |||||| ||||  |||||| | | ||| ||||
Sbjct: 340 gtgtagcgagctcaaatccgagggatgtagctaagggcaagacagagtttatgacatcct 281

                                                                       
Query: 550 cattctctgcttggtgtattgaacatgtgctgtagaccaatctctctaccgagggaaatg 609
           | |||||||| ||||| ||||| || || ||||||||||  ||||| || || |||||||
Sbjct: 280 cgttctctgcctggtggattgagcaagtactgtagaccaccctctccactgacggaaatg 221

                                                                       
Query: 610 atagagcatgtgagagagctttccgctgaaaggcggacagtttcctaattcttgcgcttg 669
           |||||||||| ||||||||||||  |||||| ||||| |||||| | |  |||| |||||
Sbjct: 220 atagagcatgggagagagctttcttctgaaaagcggagagtttcatgacccttgagcttg 161

                                                      
Query: 670 aacctgcatcaccctgatcatctatagaatgtgaaggaagcaa 712
            ||| |||||| |||||  |||| |||||||||| ||||||||
Sbjct: 160 tacccgcatcatcctgactatctctagaatgtgagggaagcaa 118



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 248 catcctggacaatctcaaggagctgaatgccctga 282
           |||||||||||  |||||||||||||| |||||||
Sbjct: 573 catcctggacagcctcaaggagctgaacgccctga 539
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                           
Query: 465     ccacggcgcctccattgagggaatggggtagagagctcgaaacctagtgatgaagctaaa 524
               |||||||| | ||||||||||||||| |||| ||||||||| || || ||||| || || 
Sbjct: 6585961 ccacggcgtcgccattgagggaatggagtagcgagctcgaatccgagcgatgacgccaat 6585902

                                                                           
Query: 525     ggcagcacagagctgacgacgtcctcattctctgcttggtgtattgaacatgtgctgtag 584
               ||||| || ||||| ||||||||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 6585901 ggcaggacggagctcacgacgtcctcgttctcagcttggtggattgagcaggtgctgtag 6585842

                                   
Query: 585     accaatctctctaccgaggg 604
               |||| |||||| || |||||
Sbjct: 6585841 accactctctccacagaggg 6585822



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                           
Query: 369     gctgctttcctcacaaacagcgctatgaagaatccctcgaggtcatcctcagggtctgtc 428
               |||||||||||||| |||| || ||||||||| ||||| ||| | ||||| ||||| |||
Sbjct: 6586175 gctgctttcctcacgaacaacgatatgaagaagccctccaggccgtcctccgggtccgtc 6586116

                             
Query: 429     cgaagcaaatgctc 442
               ||||||| ||||||
Sbjct: 6586115 cgaagcagatgctc 6586102



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                
Query: 607     atgatagagcatgtgagagagctttccgctgaaaggcggacagtttcct 655
               |||| |||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 6585728 atgacagagcatgtgagagcgctttcctctggaaggcggagagtttcct 6585680
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                         
Query: 465   ccacggcgcctccattgagggaatggggtagagagctcgaaacctagtgatgaagctaaa 524
             |||||||| | ||||||||||||||| |||| ||||||||| || || ||||| || || 
Sbjct: 20336 ccacggcgtcgccattgagggaatggagtagcgagctcgaatccgagcgatgacgccaat 20277

                                                                         
Query: 525   ggcagcacagagctgacgacgtcctcattctctgcttggtgtattgaacatgtgctgtag 584
             ||||| || ||||| ||||||||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 20276 ggcaggacggagctcacgacgtcctcgttctcagcttggtggattgagcaggtgctgtag 20217

                                 
Query: 585   accaatctctctaccgaggg 604
             |||| |||||| || |||||
Sbjct: 20216 accactctctccacagaggg 20197



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 369   gctgctttcctcacaaacagcgctatgaagaatccctcgaggtcatcctcagggtctgtc 428
             |||||||||||||| |||| || ||||||||| ||||| ||| | ||||| ||||| |||
Sbjct: 20550 gctgctttcctcacgaacaacgatatgaagaagccctccaggccgtcctccgggtccgtc 20491

                           
Query: 429   cgaagcaaatgctc 442
             ||||||| ||||||
Sbjct: 20490 cgaagcagatgctc 20477



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                              
Query: 607   atgatagagcatgtgagagagctttccgctgaaaggcggacagtttcct 655
             |||| |||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 20103 atgacagagcatgtgagagcgctttcctctggaaggcggagagtttcct 20055
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>gb|AC004882.3| Homo sapiens PAC clone RP1-76B20 from 22, complete sequence
          Length = 171682

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 520    ctaaaggcagcacagagctgac 541
              ||||||||||||||||||||||
Sbjct: 151078 ctaaaggcagcacagagctgac 151099
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>gb|AY633762.1| Mus musculus relaxin-3/INSL7 receptor 1 (GPCR135) mRNA, complete
           cds
          Length = 1419

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 58  catcacccgcagctgctttcctcac 34
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>gb|AC102219.11| Mus musculus chromosome 15, clone RP24-96K14, complete sequence
          Length = 194425

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 358    catcagccgcagctgctttcctcac 382
              ||||| |||||||||||||||||||
Sbjct: 138737 catcacccgcagctgctttcctcac 138761
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>ref|XM_527205.1| PREDICTED: Pan troglodytes similar to procollagen, type IV, alpha 3
           (Goodpasture antigen) binding protein; collagen, type
           IV, alpha 3 (Goodpasture antigen) binding protein
           (LOC471827), mRNA
          Length = 816

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 619 gtgagagagctttccgctgaa 639
           |||||||||||||||||||||
Sbjct: 69  gtgagagagctttccgctgaa 49
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>gb|AY170825.1| Mus musculus G protein-coupled receptor (Salpr) mRNA, complete cds
          Length = 1419

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 58  catcacccgcagctgctttcctcac 34
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>gb|BC053073.1| Mus musculus relaxin family peptide receptor 3, mRNA (cDNA clone
           MGC:62426 IMAGE:5686363), complete cds
          Length = 3125

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 164 catcacccgcagctgctttcctcac 140
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>gb|AF315603.1| Homo sapiens DNA polymerase kappa (POLK) and Goodpasture
           autoantigen binding protein (COL4A3BP) genes,
           bidirectional promoter and partial sequence
          Length = 955

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 619 gtgagagagctttccgctgaa 639
           |||||||||||||||||||||
Sbjct: 413 gtgagagagctttccgctgaa 393
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>gb|AF315601.1| Homo sapiens DNA polymerase kappa (POLK) mRNA, 5'UTR
          Length = 1304

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 619 gtgagagagctttccgctgaa 639
           |||||||||||||||||||||
Sbjct: 31  gtgagagagctttccgctgaa 51
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>ref|NM_178717.2| Mus musculus relaxin family peptide receptor 3 (Rxfp3), mRNA
          Length = 4254

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 744 catcacccgcagctgctttcctcac 720
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>gb|AC116341.2| Homo sapiens chromosome 5 clone RP11-144A5, complete sequence
          Length = 31443

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 619   gtgagagagctttccgctgaa 639
             |||||||||||||||||||||
Sbjct: 23800 gtgagagagctttccgctgaa 23820
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>dbj|AK096854.1| Homo sapiens cDNA FLJ39535 fis, clone PUAEN2005502, highly similar
           to Homo sapiens goodpasture antigen-binding protein
           (COL4A3BP) mRNA
          Length = 2599

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 619 gtgagagagctttccgctgaa 639
           |||||||||||||||||||||
Sbjct: 71  gtgagagagctttccgctgaa 51
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>gb|AY273797.1| Homo sapiens polymerase (DNA directed) kappa (POLK) gene, complete
            cds
          Length = 90905

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 619  gtgagagagctttccgctgaa 639
            |||||||||||||||||||||
Sbjct: 2297 gtgagagagctttccgctgaa 2317
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>dbj|AK046367.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230376P05
           product:G-PROTEIN COUPLED RECEPTOR SALPR homolog [Homo
           sapiens], full insert sequence
          Length = 3430

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 493 catcacccgcagctgctttcctcac 469
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>dbj|AK084001.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130074O13 product:G-PROTEIN
           COUPLED RECEPTOR SALPR homolog [Homo sapiens], full
           insert sequence
          Length = 4254

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 744 catcacccgcagctgctttcctcac 720
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>dbj|AK086419.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930027E07 product:unclassifiable, full
            insert sequence
          Length = 3033

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 358  catcagccgcagctgctttcctcac 382
            ||||| |||||||||||||||||||
Sbjct: 1303 catcacccgcagctgctttcctcac 1327
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>dbj|AK043414.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730093P09 product:G-PROTEIN
           COUPLED RECEPTOR SALPR homolog [Homo sapiens], full
           insert sequence
          Length = 3700

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 358 catcagccgcagctgctttcctcac 382
           ||||| |||||||||||||||||||
Sbjct: 767 catcacccgcagctgctttcctcac 743
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>emb|AL929110.10| Mouse DNA sequence from clone RP23-275P20 on chromosome 2, complete
              sequence
          Length = 186386

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    aaacacaaaattcagttacaa 148
              |||||||||||||||||||||
Sbjct: 134787 aaacacaaaattcagttacaa 134807
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>dbj|AB036934.1| Homo sapiens GPBP, DINB1 genes for Thr/Ser kinase, DINB1, partial cds
          Length = 64466

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 619  gtgagagagctttccgctgaa 639
            |||||||||||||||||||||
Sbjct: 4042 gtgagagagctttccgctgaa 4062
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 608    tgatagagcatgtgagagagcttt 631
              |||||||||||| |||||||||||
Sbjct: 487802 tgatagagcatgagagagagcttt 487825
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>ref|XM_989473.1| PREDICTED: Mus musculus RIKEN cDNA 2900075B16 gene (2900075B16Rik),
           mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 688 catctatagaatgtgaagga 707
           ||||||||||||||||||||
Sbjct: 98  catctatagaatgtgaagga 117
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>ref|XM_357872.5| PREDICTED: Mus musculus RIKEN cDNA 2900075B16 gene, transcript
           variant 1 (2900075B16Rik), mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 688 catctatagaatgtgaagga 707
           ||||||||||||||||||||
Sbjct: 98  catctatagaatgtgaagga 117
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 311     tttccttttccttggcaacg 330
               ||||||||||||||||||||
Sbjct: 1661376 tttccttttccttggcaacg 1661395
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>emb|AL035246.13|HS998G20 Human DNA sequence from clone RP5-998G20 on chromosome Xq21.1-21.33
             Contains a novel pseudogene, complete sequence
          Length = 136579

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   tgaatgccctgagacctcca 290
             ||||||||||||||||||||
Sbjct: 71163 tgaatgccctgagacctcca 71182
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>gb|AF318313.1| Homo sapiens DNA polymerase kappa (POLK) mRNA, partial cds;
           alternatively spliced
          Length = 1335

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 620 tgagagagctttccgctgaa 639
           ||||||||||||||||||||
Sbjct: 1   tgagagagctttccgctgaa 20
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>gb|AC021059.25| Homo sapiens 3 BAC RP11-464E15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164076

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    agaccccagatggagcagag 241
              ||||||||||||||||||||
Sbjct: 148475 agaccccagatggagcagag 148456
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 311     tttccttttccttggcaacg 330
               ||||||||||||||||||||
Sbjct: 2057435 tttccttttccttggcaacg 2057454
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>gb|AE011774.1| Xanthomonas axonopodis pv. citri str. 306,  section 152 of 469 of
           the complete genome
          Length = 12168

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 311 tttccttttccttggcaacg 330
           ||||||||||||||||||||
Sbjct: 439 tttccttttccttggcaacg 458
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>gb|AE012237.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 145
           of 460 of the complete genome
          Length = 13060

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 311 tttccttttccttggcaacg 330
           ||||||||||||||||||||
Sbjct: 425 tttccttttccttggcaacg 444
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>gb|AC113364.2| Homo sapiens chromosome 5 clone RP11-100D19, complete sequence
          Length = 130187

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 178   taccaaaagaaatcgctcaaagat 201
             ||||||||||||| ||||||||||
Sbjct: 20745 taccaaaagaaatggctcaaagat 20768
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>gb|AC094088.3| Homo sapiens chromosome 5 clone CTD-2180L22, complete sequence
          Length = 80091

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 178  taccaaaagaaatcgctcaaagat 201
            ||||||||||||| ||||||||||
Sbjct: 9919 taccaaaagaaatggctcaaagat 9896
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>ref|XM_692322.1| PREDICTED: Danio rerio similar to NOD3 protein (LOC568962), mRNA
          Length = 2982

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 612  agagcatgtgagagagcttt 631
            ||||||||||||||||||||
Sbjct: 2532 agagcatgtgagagagcttt 2513
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>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence
          Length = 201260

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 688   catctatagaatgtgaagga 707
             ||||||||||||||||||||
Sbjct: 82526 catctatagaatgtgaagga 82507
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tttccttttccttggcaacg 330
               ||||||||||||||||||||
Sbjct: 3445436 tttccttttccttggcaacg 3445417
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>dbj|AK019353.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:2900075B16 product:hypothetical
           EF-hand containing protein, full insert sequence
          Length = 359

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 688 catctatagaatgtgaagga 707
           ||||||||||||||||||||
Sbjct: 22  catctatagaatgtgaagga 41
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>ref|XM_344525.2| PREDICTED: Rattus norvegicus similar to EF hand domain family,
           member A2 (LOC364601), mRNA
          Length = 1584

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 688 catctatagaatgtgaagga 707
           ||||||||||||||||||||
Sbjct: 560 catctatagaatgtgaagga 579
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>gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, complete sequence
          Length = 39479

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 670   aacctgcatcaccctgatca 689
             ||||||||||||||||||||
Sbjct: 30270 aacctgcatcaccctgatca 30289
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 311     tttccttttccttggcaacg 330
               ||||||||||||||||||||
Sbjct: 2077331 tttccttttccttggcaacg 2077350
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>gb|AC140948.1| Gallus gallus BAC clone TAM31-60A4 from chromosome ul, complete
             sequence
          Length = 91737

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   ctgctttcctcacaaacagc 389
             ||||||||||||||||||||
Sbjct: 39400 ctgctttcctcacaaacagc 39381
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>emb|AJ411801.1|CAR411801 Cicer arietinum Ty3-gypsy like Retrotransposon CaRep and partial
           pol gene for polyprotein including gag and protease,
           clone pCaEr1034
          Length = 956

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 aatccctcgaggtcatcctc 418
           ||||||||||||||||||||
Sbjct: 679 aatccctcgaggtcatcctc 698


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,708,951
Number of Sequences: 3902068
Number of extensions: 5708951
Number of successful extensions: 99447
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99227
Number of HSP's gapped (non-prelim): 220
length of query: 725
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 702
effective length of database: 17,143,297,704
effective search space: 12034594988208
effective search space used: 12034594988208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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