ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39l01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190322.1| Oryza sativa (japonica cultivar-group), predic... 196 4e-47
2dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
4dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6dbj|AK100022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
8emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 107 3e-20
9ref|NM_121435.1| Arabidopsis thaliana unknown protein AT5G14310 ... 82 2e-12
10gb|BT000439.1| Arabidopsis thaliana putative protein (At5g14310)... 82 2e-12
11emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, B... 82 2e-12
12emb|BX832618.1|CNS0A1LV Arabidopsis thaliana Full-length cDNA Co... 82 2e-12
13gb|AY085477.1| Arabidopsis thaliana clone 153235 mRNA, complete ... 82 2e-12
14gb|BT001209.1| Arabidopsis thaliana putative protein (At5g14310)... 82 2e-12
15emb|BX831911.1|CNS09ZK6 Arabidopsis thaliana Full-length cDNA Co... 74 4e-10
16emb|BX833845.1|CNS09Z64 Arabidopsis thaliana Full-length cDNA Co... 74 4e-10
17gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 44 0.39
18gb|AY722924.2| Borrelia garinii PBi variable plasmid segment G1M... 42 1.5
19gb|AY722919.2| Borrelia garinii PBi variable plasmid segment G1M... 42 1.5
20gb|AC133456.11| Mus musculus chromosome 5, clone RP24-465G18, co... 40 6.0
21gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 6.0
22gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, com... 40 6.0
23ref|NM_001031236.1| Gallus gallus soc-2 suppressor of clear homo... 40 6.0
24gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.0
25gb|AC123748.10| Mus musculus chromosome 5, clone RP24-176M16, co... 40 6.0
26gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, comple... 40 6.0
27gb|AC007569.22| Homo sapiens 12 BAC RP11-689B22 (Roswell Park Ca... 40 6.0
28emb|CR974593.9| Pig DNA sequence from clone CH242-79N20 on chrom... 40 6.0
29gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete seq... 40 6.0
30gb|AC110917.11| Mus musculus, clone RP23-155I20, complete sequence 40 6.0
31emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on ch... 40 6.0
32emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 ... 40 6.0
33emb|AJ851376.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.0
34emb|BX005448.16| Zebrafish DNA sequence from clone DKEY-36K5, co... 40 6.0
35emb|BX537738.1|HSM805819 Homo sapiens genomic DNA; cDNA DKFZp686... 40 6.0
36emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 i... 40 6.0
37gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete se... 40 6.0
38gb|AC079603.11| Homo sapiens 12 BAC RP11-798I13 (Roswell Park Ca... 40 6.0
39gb|AC108149.4| Homo sapiens BAC clone RP11-473D12 from 4, comple... 40 6.0
40dbj|AK136543.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 6.0
41gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, co... 40 6.0
42gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Canc... 40 6.0
43emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in l... 40 6.0
44gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, comp... 40 6.0
45dbj|AK037727.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 6.0
46emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in ... 40 6.0
47ref|NM_172550.3| Mus musculus RIKEN cDNA A130042E20 gene (A13004... 40 6.0
48gb|BC057308.1| Mus musculus RIKEN cDNA A130042E20 gene, mRNA (cD... 40 6.0
49emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 i... 40 6.0
50dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.0 
>ref|NM_190322.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1233

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 259  ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 318
            |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 1233 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 1174

                                                                        
Query: 319  ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 378
             |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 1173 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 1114

                                                                        
Query: 379  gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 438
             || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 1113 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 1054

                       
Query: 439  gtaagcaattg 449
            ||| |||||||
Sbjct: 1053 gtatgcaattg 1043
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>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1065G12
          Length = 165006

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Plus

                                                                         
Query: 259   ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 318
             |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 92243 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 92302

                                                                         
Query: 319   ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 378
              |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 92303 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 92362

                                                                         
Query: 379   gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 438
              || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 92363 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 92422

                        
Query: 439   gtaagcaattg 449
             ||| |||||||
Sbjct: 92423 gtatgcaattg 92433



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/94 (91%), Gaps = 4/94 (4%)
 Strand = Plus / Plus

                                                                         
Query: 1     caaagggtacaaaaggaatgaaagaatttagctctacgaggcggaagagcgtcatcgtct 60
             ||||||||||||||| ||| |||||||| |||||||| ||| ||||||||   |||||||
Sbjct: 91983 caaagggtacaaaagaaattaaagaattgagctctac-agggggaagagc---atcgtct 92038

                                               
Query: 61    ttgagttcagtctacaatttgcacactacattct 94
             ||||||||||||||||||||||||||||||||||
Sbjct: 92039 ttgagttcagtctacaatttgcacactacattct 92072



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   ctcccatcaccaggtgaaaaagaa 203
             ||||||| ||||||||||||||||
Sbjct: 92162 ctcccattaccaggtgaaaaagaa 92185
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Plus

                                                                            
Query: 259      ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 318
                |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 39290537 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 39290596

                                                                            
Query: 319      ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 378
                 |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 39290597 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 39290656

                                                                            
Query: 379      gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 438
                 || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 39290657 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 39290716

                           
Query: 439      gtaagcaattg 449
                ||| |||||||
Sbjct: 39290717 gtatgcaattg 39290727



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/94 (91%), Gaps = 4/94 (4%)
 Strand = Plus / Plus

                                                                            
Query: 1        caaagggtacaaaaggaatgaaagaatttagctctacgaggcggaagagcgtcatcgtct 60
                ||||||||||||||| ||| |||||||| |||||||| ||| ||||||||   |||||||
Sbjct: 39290277 caaagggtacaaaagaaattaaagaattgagctctac-agggggaagagc---atcgtct 39290332

                                                  
Query: 61       ttgagttcagtctacaatttgcacactacattct 94
                ||||||||||||||||||||||||||||||||||
Sbjct: 39290333 ttgagttcagtctacaatttgcacactacattct 39290366



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 180      ctcccatcaccaggtgaaaaagaa 203
                ||||||| ||||||||||||||||
Sbjct: 39290456 ctcccattaccaggtgaaaaagaa 39290479
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>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551C06
          Length = 149829

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Plus

                                                                         
Query: 259   ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 318
             |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 71783 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 71842

                                                                         
Query: 319   ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 378
              |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 71843 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 71902

                                                                         
Query: 379   gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 438
              || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 71903 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 71962

                        
Query: 439   gtaagcaattg 449
             ||| |||||||
Sbjct: 71963 gtatgcaattg 71973



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/94 (91%), Gaps = 4/94 (4%)
 Strand = Plus / Plus

                                                                         
Query: 1     caaagggtacaaaaggaatgaaagaatttagctctacgaggcggaagagcgtcatcgtct 60
             ||||||||||||||| ||| |||||||| |||||||| ||| ||||||||   |||||||
Sbjct: 71523 caaagggtacaaaagaaattaaagaattgagctctac-agggggaagagc---atcgtct 71578

                                               
Query: 61    ttgagttcagtctacaatttgcacactacattct 94
             ||||||||||||||||||||||||||||||||||
Sbjct: 71579 ttgagttcagtctacaatttgcacactacattct 71612



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   ctcccatcaccaggtgaaaaagaa 203
             ||||||| ||||||||||||||||
Sbjct: 71702 ctcccattaccaggtgaaaaagaa 71725
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 287     gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 346
               |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 8795689 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 8795630

                                                                           
Query: 347     ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 406
               || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 8795629 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 8795570

                                                     
Query: 407     gcatccacatttaccttgcggagttcctcagagtaagc 444
               ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 8795569 gcatccacatttaccttgcggagctcctccgagtaagc 8795532
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>dbj|AK100022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145I21, full
            insert sequence
          Length = 1965

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                        
Query: 287  gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 346
            |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 1403 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 1344

                                                                        
Query: 347  ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 406
            || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 1343 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 1284

                                                  
Query: 407  gcatccacatttaccttgcggagttcctcagagtaagc 444
            ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1283 gcatccacatttaccttgcggagctcctccgagtaagc 1246
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 287     gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 346
               |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 8795572 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 8795513

                                                                           
Query: 347     ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 406
               || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 8795512 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 8795453

                                                     
Query: 407     gcatccacatttaccttgcggagttcctcagagtaagc 444
               ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 8795452 gcatccacatttaccttgcggagctcctccgagtaagc 8795415
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>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 195500

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                         
Query: 287   gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 346
             |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 46480 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 46539

                                                                         
Query: 347   ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 406
             || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 46540 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 46599

                                                   
Query: 407   gcatccacatttaccttgcggagttcctcagagtaagc 444
             ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 46600 gcatccacatttaccttgcggagctcctccgagtaagc 46637
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>ref|NM_121435.1| Arabidopsis thaliana unknown protein AT5G14310 mRNA, complete cds
          Length = 1808

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 290  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1584 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1525

                                         
Query: 350  aggaacacatcaagtgttgcgaactcatg 378
            || | || ||||||||| || ||||||||
Sbjct: 1524 agaagcatatcaagtgtagcaaactcatg 1496
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>gb|BT000439.1| Arabidopsis thaliana putative protein (At5g14310) mRNA, complete cds
          Length = 1736

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 290  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1577 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1518

                                         
Query: 350  aggaacacatcaagtgttgcgaactcatg 378
            || | || ||||||||| || ||||||||
Sbjct: 1517 agaagcatatcaagtgtagcaaactcatg 1489
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>emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project)
          Length = 100269

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                         
Query: 290   atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
             ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 36141 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 36082

                                          
Query: 350   aggaacacatcaagtgttgcgaactcatg 378
             || | || ||||||||| || ||||||||
Sbjct: 36081 agaagcatatcaagtgtagcaaactcatg 36053
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>emb|BX832618.1|CNS0A1LV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH85ZA10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1899

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 290  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1585 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1526

                                         
Query: 350  aggaacacatcaagtgttgcgaactcatg 378
            || | || ||||||||| || ||||||||
Sbjct: 1525 agaagcatatcaagtgtagcaaactcatg 1497
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>gb|AY085477.1| Arabidopsis thaliana clone 153235 mRNA, complete sequence
          Length = 1809

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 290  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1582 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1523

                                         
Query: 350  aggaacacatcaagtgttgcgaactcatg 378
            || | || ||||||||| || ||||||||
Sbjct: 1522 agaagcatatcaagtgtagcaaactcatg 1494
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>gb|BT001209.1| Arabidopsis thaliana putative protein (At5g14310) mRNA, complete cds
          Length = 1409

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 290  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1310 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1251

                                         
Query: 350  aggaacacatcaagtgttgcgaactcatg 378
            || | || ||||||||| || ||||||||
Sbjct: 1250 agaagcatatcaagtgtagcaaactcatg 1222
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>emb|BX831911.1|CNS09ZK6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH39ZB07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1738

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 290  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
            ||||||||||| | ||| ||||||||||||||||| ||||||||  |||| || ||||||
Sbjct: 1554 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtacctgaggagtcttg 1495

                                         
Query: 350  aggaacacatcaagtgttgcgaactcatg 378
            || | || ||||||||| || ||||||||
Sbjct: 1494 agaagcatatcaagtgtagcaaactcatg 1466
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>emb|BX833845.1|CNS09Z64 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL7ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 881

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 290 atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 349
           ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 673 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 614

                                        
Query: 350 aggaacacatcaagtgttgcgaactcatg 378
           || | || || |||||| || ||||||||
Sbjct: 613 agaagcatatgaagtgtagcaaactcatg 585
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 9      acaaaaggaatgaaagaattta 30
              ||||||||||||||||||||||
Sbjct: 190804 acaaaaggaatgaaagaattta 190783
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>gb|AY722924.2| Borrelia garinii PBi variable plasmid segment G1M1b07c12.s1, WORKING
            DRAFT SEQUENCE
          Length = 11868

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 236  acaacactgatcttttgctac 256
            |||||||||||||||||||||
Sbjct: 7324 acaacactgatcttttgctac 7344
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>gb|AY722919.2| Borrelia garinii PBi variable plasmid segment G1M1b13a11.r1, WORKING
             DRAFT SEQUENCE
          Length = 16203

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   acaacactgatcttttgctac 256
             |||||||||||||||||||||
Sbjct: 12267 acaacactgatcttttgctac 12287
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>gb|AC133456.11| Mus musculus chromosome 5, clone RP24-465G18, complete sequence
          Length = 162210

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    aaaggaatgaaagaatttag 31
             ||||||||||||||||||||
Sbjct: 45154 aaaggaatgaaagaatttag 45173
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     aactggttcctcgccttttt 167
               ||||||||||||||||||||
Sbjct: 1547019 aactggttcctcgccttttt 1547038
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>gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, complete sequence
          Length = 165525

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    aaaggaatgaaagaatttag 31
             ||||||||||||||||||||
Sbjct: 86146 aaaggaatgaaagaatttag 86165
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>ref|NM_001031236.1| Gallus gallus soc-2 suppressor of clear homolog (C. elegans) (SHOC2),
            mRNA
          Length = 4136

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   ttcagtctacaatttgcaca 85
            ||||||||||||||||||||
Sbjct: 2301 ttcagtctacaatttgcaca 2282
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    tcaccaggtgaaaaagaatg 205
              ||||||||||||||||||||
Sbjct: 946812 tcaccaggtgaaaaagaatg 946793
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>gb|AC123748.10| Mus musculus chromosome 5, clone RP24-176M16, complete sequence
          Length = 158365

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaggaatgaaagaatttag 31
             ||||||||||||||||||||
Sbjct: 26779 aaaggaatgaaagaatttag 26760
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>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence
          Length = 145709

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ggcctgggcctgtggtgtct 347
              ||||||||||||||||||||
Sbjct: 107808 ggcctgggcctgtggtgtct 107789
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>gb|AC007569.22| Homo sapiens 12 BAC RP11-689B22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 111074

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    atgaaagaatttagctctac 37
             ||||||||||||||||||||
Sbjct: 72850 atgaaagaatttagctctac 72831
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>emb|CR974593.9| Pig DNA sequence from clone CH242-79N20 on chromosome 7, complete
             sequence
          Length = 62102

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaaaggaatgaaagaattta 30
             ||||||||||||||||||||
Sbjct: 47808 aaaaggaatgaaagaattta 47827
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>gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete sequence
          Length = 115134

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ctctatttcacaacactgat 246
             ||||||||||||||||||||
Sbjct: 36573 ctctatttcacaacactgat 36592
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>gb|AC110917.11| Mus musculus, clone RP23-155I20, complete sequence
          Length = 193005

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     aaaggaatgaaagaatttag 31
              ||||||||||||||||||||
Sbjct: 183634 aaaggaatgaaagaatttag 183615
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>emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on chromosome 10, complete
              sequence
          Length = 172911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    catcaccaggtgaaaaagaa 203
              ||||||||||||||||||||
Sbjct: 100735 catcaccaggtgaaaaagaa 100716
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>emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 in linkage group 21,
              complete sequence
          Length = 209782

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 58     tctttgagttcagtctacaatttgcaca 85
              |||||||||||||| |||| ||||||||
Sbjct: 161955 tctttgagttcagtatacattttgcaca 161928
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>emb|AJ851376.1| Gallus gallus mRNA for hypothetical protein, clone 1b13
          Length = 4136

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   ttcagtctacaatttgcaca 85
            ||||||||||||||||||||
Sbjct: 2301 ttcagtctacaatttgcaca 2282
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>emb|BX005448.16| Zebrafish DNA sequence from clone DKEY-36K5, complete sequence
          Length = 137468

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 58  tctttgagttcagtctacaatttgcaca 85
           |||||||||||||| |||| ||||||||
Sbjct: 914 tctttgagttcagtatacattttgcaca 887
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>emb|BX537738.1|HSM805819 Homo sapiens genomic DNA; cDNA DKFZp686G1788 (from clone
            DKFZp686G1788)
          Length = 7856

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  gcagcgcctcccatcaccag 192
            ||||||||||||||||||||
Sbjct: 2538 gcagcgcctcccatcaccag 2557
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>emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 in linkage group 15,
             complete sequence
          Length = 224041

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 58    tctttgagttcagtctacaatttgcaca 85
             |||||||||||||| |||| ||||||||
Sbjct: 76437 tctttgagttcagtatacattttgcaca 76410
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>gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete sequence
          Length = 121112

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ctctatttcacaacactgat 246
             ||||||||||||||||||||
Sbjct: 45013 ctctatttcacaacactgat 45032
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>gb|AC079603.11| Homo sapiens 12 BAC RP11-798I13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 164837

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaggaatgaaagaatttag 31
             ||||||||||||||||||||
Sbjct: 22167 aaaggaatgaaagaatttag 22148
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>gb|AC108149.4| Homo sapiens BAC clone RP11-473D12 from 4, complete sequence
          Length = 86324

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    gtacaaaaggaatgaaagaa 26
            ||||||||||||||||||||
Sbjct: 4835 gtacaaaaggaatgaaagaa 4816
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>dbj|AK136543.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
            library, clone:9130204L09 product:hypothetical protein,
            full insert sequence
          Length = 2654

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  ctaactggttcctcgccttt 165
            ||||||||||||||||||||
Sbjct: 2106 ctaactggttcctcgccttt 2125
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>gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, complete sequence
          Length = 205015

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ctaactggttcctcgccttt 165
              ||||||||||||||||||||
Sbjct: 143478 ctaactggttcctcgccttt 143497
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>gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 235639

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ctaactggttcctcgccttt 165
              ||||||||||||||||||||
Sbjct: 118014 ctaactggttcctcgccttt 118033
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>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2, complete
              sequence
          Length = 146298

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 58     tctttgagttcagtctacaatttgcaca 85
              |||||||||||||| |||| ||||||||
Sbjct: 132971 tctttgagttcagtatacattttgcaca 132944
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>gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, complete sequence
          Length = 150165

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   catcaccaggtgaaaaagaa 203
             ||||||||||||||||||||
Sbjct: 29253 catcaccaggtgaaaaagaa 29272
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>dbj|AK037727.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130042E20 product:hypothetical
            Uncharacterized protein family UPF0054 containing
            protein, full insert sequence
          Length = 3841

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  ctaactggttcctcgccttt 165
            ||||||||||||||||||||
Sbjct: 2082 ctaactggttcctcgccttt 2101
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>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete
              sequence
          Length = 265520

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 58     tctttgagttcagtctacaatttgcaca 85
              |||||||||||||| |||| ||||||||
Sbjct: 128061 tctttgagttcagtatacattttgcaca 128034
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>ref|NM_172550.3| Mus musculus RIKEN cDNA A130042E20 gene (A130042E20Rik), mRNA
          Length = 4520

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  ctaactggttcctcgccttt 165
            ||||||||||||||||||||
Sbjct: 2355 ctaactggttcctcgccttt 2374
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>gb|BC057308.1| Mus musculus RIKEN cDNA A130042E20 gene, mRNA (cDNA clone MGC:66581
            IMAGE:5703033), complete cds
          Length = 4538

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  ctaactggttcctcgccttt 165
            ||||||||||||||||||||
Sbjct: 2355 ctaactggttcctcgccttt 2374
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>emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 in linkage group 18,
              complete sequence
          Length = 185008

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 58     tctttgagttcagtctacaatttgcaca 85
              |||||||||||||| |||| ||||||||
Sbjct: 101370 tctttgagttcagtttacattttgcaca 101397
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>dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-693A6, complete
              sequence
          Length = 182976

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    gcagcgcctcccatcaccag 192
              ||||||||||||||||||||
Sbjct: 118229 gcagcgcctcccatcaccag 118248


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,725,190
Number of Sequences: 3902068
Number of extensions: 3725190
Number of successful extensions: 68490
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68314
Number of HSP's gapped (non-prelim): 173
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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