ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39k22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
2gb|AY111489.1| Zea mays CL10542_1 mRNA sequence 280 6e-72
3gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome... 133 9e-28
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 9e-28
6ref|NM_103748.2| Arabidopsis thaliana GATB (GLU-ADT SUBUNIT B); ... 44 0.64
7ref|NM_202262.1| Arabidopsis thaliana GATB (GLU-ADT SUBUNIT B); ... 44 0.64
8ref|NM_202261.1| Arabidopsis thaliana GATB (GLU-ADT SUBUNIT B); ... 44 0.64
9gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome... 44 0.64
10emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, ... 44 0.64
11emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, ... 44 0.64
12emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BA... 44 0.64
13gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, co... 44 0.64
14gb|AC147740.3| Xenopus tropicalis BAc clone ISB1-90K22 containin... 44 0.64
15gb|AY074557.1| Arabidopsis thaliana At1g48520/T1N15_12 mRNA, com... 44 0.64
16gb|AY054223.1| Arabidopsis thaliana At1g48520/T1N15_12 mRNA, com... 44 0.64
17gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome... 44 0.64
18emb|BX815942.1|CNS0AAKH Arabidopsis thaliana Full-length cDNA Co... 44 0.64
19emb|BX815581.1|CNS0AAGZ Arabidopsis thaliana Full-length cDNA Co... 44 0.64
20gb|AF239836.1|AF239836 Arabidopsis thaliana Glu-tRNA(Gln) amidot... 44 0.64
21gb|AC170425.1| Rhesus Macaque BAC CH250-10K16 (Children's Hospi... 42 2.5
22emb|AL928857.15| Mouse DNA sequence from clone RP24-499A8 on chr... 42 2.5
23emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 i... 42 2.5
24gb|AC107023.4| Homo sapiens 12 BAC RP11-115F18 (Roswell Park Can... 42 2.5
25dbj|AK088225.1| Mus musculus 2 days neonate thymus thymic cells ... 42 2.5
26ref|NG_002413.1| Mus musculus piggyBac transposable element deri... 42 2.5
27gb|AC157532.2| Pan troglodytes BAC clone CH251-305A6 from chromo... 42 2.5
28gb|AC157528.2| Pan troglodytes BAC clone CH251-422M6 from chromo... 42 2.5
29gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromo... 42 2.5
30gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana... 42 2.5 
>dbj|AK064895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L07, full
            insert sequence
          Length = 1964

 Score =  420 bits (212), Expect = e-114
 Identities = 323/360 (89%)
 Strand = Plus / Minus

                                                                        
Query: 374  ccttcaacttctccccgaggattttgttcaataaaacaggacttgctttacctttcgatg 433
            ||||||| ||||||||||||||||||||||| ||||||||| | |||||||| || ||||
Sbjct: 1864 ccttcaatttctccccgaggattttgttcaacaaaacaggattagctttaccctttgatg 1805

                                                                        
Query: 434  ctttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgct 493
            ||||||||||||| ||||| |||||||| ||||| || |||||||| | |||||||||||
Sbjct: 1804 ctttcatcacctggccagcaaaaaatccttgcaatttagttttcccggaccgatactgct 1745

                                                                        
Query: 494  caagttgctttggattctcggcgagtactttatctaccatggcctcaattgctgctggat 553
            |||||||||||||||| || || | ||||| ||||||||| |||||||||||||| ||||
Sbjct: 1744 caagttgctttggattatcagctaatacttgatctaccattgcctcaattgctgcaggat 1685

                                                                        
Query: 554  ctgctatctgaaccaaatctttctcctctatcaccgacttgacagttccgcctttagtaa 613
            |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||
Sbjct: 1684 ctgctatctgaaccaaatctttctcctctatcacagacttgacagttccacctttcgcaa 1625

                                                                        
Query: 614  tgagctcaacaagaatctccttgccaatcttcccactgatagtaccattctttatgaatg 673
            |||| ||||  ||||||||||| |||||||||||||||||||| |||||| ||||  |||
Sbjct: 1624 tgagttcaatcagaatctcctttccaatcttcccactgatagttccattccttatagatg 1565

                                                                        
Query: 674  caatcagttcagaaagctcaagaggtgttaatttaatttcatcaatagagagcttttcat 733
            |||||| |||||||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct: 1564 caatcaattcagaaagctccagaggtgttaatttaatttcatcaatggaaagtttttcat 1505
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>gb|AY111489.1| Zea mays CL10542_1 mRNA sequence
          Length = 767

 Score =  280 bits (141), Expect = 6e-72
 Identities = 254/293 (86%)
 Strand = Plus / Plus

                                                                       
Query: 427 ttcgatgctttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccga 486
           |||||||||||||||||||| |||||      ||| || | ||| | ||| ||||| || 
Sbjct: 252 ttcgatgctttcatcacctggccagcnnnncctccttgtagcttagattttccagcacgg 311

                                                                       
Query: 487 tactgctcaagttgctttggattctcggcgagtactttatctaccatggcctcaattgct 546
           ||||||||||||||||||||||| || || | ||||||||||||||| ||||||||||||
Sbjct: 312 tactgctcaagttgctttggattatcagcaattactttatctaccattgcctcaattgct 371

                                                                       
Query: 547 gctggatctgctatctgaaccaaatctttctcctctatcaccgacttgacagttccgcct 606
           |||||||||||||||||||||||||||||||| |||||||| | ||| || |||||||||
Sbjct: 372 gctggatctgctatctgaaccaaatctttctcttctatcacagccttaactgttccgcct 431

                                                                       
Query: 607 ttagtaatgagctcaacaagaatctccttgccaatcttcccactgatagtaccattcttt 666
           || | |||||||||  | || ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 432 ttggcaatgagctcggccagtatctccttgccgatcttcccacttatagttccattctta 491

                                                                
Query: 667 atgaatgcaatcagttcagaaagctcaagaggtgttaatttaatttcatcaat 719
           ||  |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 492 attgatgctatcagttcagaaagctctagaggtgttaatttaatttcatcaat 544
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>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0038F07, complete sequence
          Length = 175703

 Score =  133 bits (67), Expect = 9e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                         
Query: 442   acctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctcaagttgc 501
             ||||| ||||| |||||||| ||||| || |||||||| | |||||||||||||||||||
Sbjct: 44681 acctggccagcaaaaaatccttgcaatttagttttcccggaccgatactgctcaagttgc 44740

                                                                         
Query: 502   tttggattctcggcgagtactttatctaccatggcctcaattgctgctggatctgctatc 561
             |||||||| || || | ||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 44741 tttggattatcagctaatacttgatctaccattgcctcaattgctgcaggatctgctatc 44800

                
Query: 562   tga 564
             |||
Sbjct: 44801 tga 44803



 Score =  127 bits (64), Expect = 6e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                         
Query: 630   ctccttgccaatcttcccactgatagtaccattctttatgaatgcaatcagttcagaaag 689
             |||||| |||||||||||||||||||| |||||| ||||  ||||||||| |||||||||
Sbjct: 45473 ctcctttccaatcttcccactgatagttccattccttatagatgcaatcaattcagaaag 45532

                                                         
Query: 690   ctcaagaggtgttaatttaatttcatcaatagagagcttttcat 733
             ||| |||||||||||||||||||||||||| || || |||||||
Sbjct: 45533 ctccagaggtgttaatttaatttcatcaatggaaagtttttcat 45576



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                         
Query: 374   ccttcaacttctccccgaggattttgttcaataaaacaggacttgctttacctttcgatg 433
             ||||||| ||||||||||||||||||||||| ||||||||| | |||||||| || ||||
Sbjct: 44528 ccttcaatttctccccgaggattttgttcaacaaaacaggattagctttaccctttgatg 44587

                          
Query: 434   ctttcatcacctg 446
             |||||||||||||
Sbjct: 44588 ctttcatcacctg 44600



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 561   ctgaaccaaatctttctcctctatcaccgacttgacagttccgcctttagtaatgagctc 620
             ||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| ||
Sbjct: 45186 ctgaaccaaatctttctcctctatcacagacttgacagttccacctttcgcaatgagttc 45245

                        
Query: 621   aacaagaatct 631
             ||  |||||||
Sbjct: 45246 aatcagaatct 45256
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 9e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                            
Query: 442      acctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctcaagttgc 501
                ||||| ||||| |||||||| ||||| || |||||||| | |||||||||||||||||||
Sbjct: 19326130 acctggccagcaaaaaatccttgcaatttagttttcccggaccgatactgctcaagttgc 19326189

                                                                            
Query: 502      tttggattctcggcgagtactttatctaccatggcctcaattgctgctggatctgctatc 561
                |||||||| || || | ||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 19326190 tttggattatcagctaatacttgatctaccattgcctcaattgctgcaggatctgctatc 19326249

                   
Query: 562      tga 564
                |||
Sbjct: 19326250 tga 19326252



 Score =  127 bits (64), Expect = 6e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                            
Query: 630      ctccttgccaatcttcccactgatagtaccattctttatgaatgcaatcagttcagaaag 689
                |||||| |||||||||||||||||||| |||||| ||||  ||||||||| |||||||||
Sbjct: 19326922 ctcctttccaatcttcccactgatagttccattccttatagatgcaatcaattcagaaag 19326981

                                                            
Query: 690      ctcaagaggtgttaatttaatttcatcaatagagagcttttcat 733
                ||| |||||||||||||||||||||||||| || || |||||||
Sbjct: 19326982 ctccagaggtgttaatttaatttcatcaatggaaagtttttcat 19327025



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                            
Query: 374      ccttcaacttctccccgaggattttgttcaataaaacaggacttgctttacctttcgatg 433
                ||||||| ||||||||||||||||||||||| ||||||||| | |||||||| || ||||
Sbjct: 19325977 ccttcaatttctccccgaggattttgttcaacaaaacaggattagctttaccctttgatg 19326036

                             
Query: 434      ctttcatcacctg 446
                |||||||||||||
Sbjct: 19326037 ctttcatcacctg 19326049



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 561      ctgaaccaaatctttctcctctatcaccgacttgacagttccgcctttagtaatgagctc 620
                ||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| ||
Sbjct: 19326635 ctgaaccaaatctttctcctctatcacagacttgacagttccacctttcgcaatgagttc 19326694

                           
Query: 621      aacaagaatct 631
                ||  |||||||
Sbjct: 19326695 aatcagaatct 19326705
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 9e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                            
Query: 442      acctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctcaagttgc 501
                ||||| ||||| |||||||| ||||| || |||||||| | |||||||||||||||||||
Sbjct: 19485679 acctggccagcaaaaaatccttgcaatttagttttcccggaccgatactgctcaagttgc 19485738

                                                                            
Query: 502      tttggattctcggcgagtactttatctaccatggcctcaattgctgctggatctgctatc 561
                |||||||| || || | ||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 19485739 tttggattatcagctaatacttgatctaccattgcctcaattgctgcaggatctgctatc 19485798

                   
Query: 562      tga 564
                |||
Sbjct: 19485799 tga 19485801



 Score =  127 bits (64), Expect = 6e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                            
Query: 630      ctccttgccaatcttcccactgatagtaccattctttatgaatgcaatcagttcagaaag 689
                |||||| |||||||||||||||||||| |||||| ||||  ||||||||| |||||||||
Sbjct: 19486471 ctcctttccaatcttcccactgatagttccattccttatagatgcaatcaattcagaaag 19486530

                                                            
Query: 690      ctcaagaggtgttaatttaatttcatcaatagagagcttttcat 733
                ||| |||||||||||||||||||||||||| || || |||||||
Sbjct: 19486531 ctccagaggtgttaatttaatttcatcaatggaaagtttttcat 19486574



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                            
Query: 374      ccttcaacttctccccgaggattttgttcaataaaacaggacttgctttacctttcgatg 433
                ||||||| ||||||||||||||||||||||| ||||||||| | |||||||| || ||||
Sbjct: 19485526 ccttcaatttctccccgaggattttgttcaacaaaacaggattagctttaccctttgatg 19485585

                             
Query: 434      ctttcatcacctg 446
                |||||||||||||
Sbjct: 19485586 ctttcatcacctg 19485598



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 561      ctgaaccaaatctttctcctctatcaccgacttgacagttccgcctttagtaatgagctc 620
                ||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| ||
Sbjct: 19486184 ctgaaccaaatctttctcctctatcacagacttgacagttccacctttcgcaatgagttc 19486243

                           
Query: 621      aacaagaatct 631
                ||  |||||||
Sbjct: 19486244 aatcagaatct 19486254
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>ref|NM_103748.2| Arabidopsis thaliana GATB (GLU-ADT SUBUNIT B); carbon-nitrogen
            ligase, with glutamine as amido-N-donor /
            glutamyl-tRNA(Gln) amidotransferase/ ligase AT1G48520
            (GATB) transcript variant AT1G48520.1 mRNA, complete cds
          Length = 2020

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1666 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1607

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1606 aagctgctttgggttctc 1589
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>ref|NM_202262.1| Arabidopsis thaliana GATB (GLU-ADT SUBUNIT B); carbon-nitrogen
            ligase, with glutamine as amido-N-donor /
            glutamyl-tRNA(Gln) amidotransferase/ ligase AT1G48520
            (GATB) transcript variant AT1G48520.3 mRNA, complete cds
          Length = 2036

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1682 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1623

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1622 aagctgctttgggttctc 1605
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>ref|NM_202261.1| Arabidopsis thaliana GATB (GLU-ADT SUBUNIT B); carbon-nitrogen
            ligase, with glutamine as amido-N-donor /
            glutamyl-tRNA(Gln) amidotransferase/ ligase AT1G48520
            (GATB) transcript variant AT1G48520.2 mRNA, complete cds
          Length = 2102

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1748 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1689

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1688 aagctgctttgggttctc 1671
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>gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome 9, complete sequence
          Length = 228144

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 27     tgagtttacagctgcataagat 48
              ||||||||||||||||||||||
Sbjct: 156577 tgagtttacagctgcataagat 156556
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>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
          Length = 192861

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 258  ttttacaaaagaatgtgattct 279
            ||||||||||||||||||||||
Sbjct: 4047 ttttacaaaagaatgtgattct 4026
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>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
          Length = 199536

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 258    ttttacaaaagaatgtgattct 279
              ||||||||||||||||||||||
Sbjct: 198583 ttttacaaaagaatgtgattct 198562
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>emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project)
          Length = 98124

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 258   ttttacaaaagaatgtgattct 279
             ||||||||||||||||||||||
Sbjct: 51265 ttttacaaaagaatgtgattct 51244
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>gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, complete sequence
          Length = 234778

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 169   gtcatgtgaactggattgcttt 190
             ||||||||||||||||||||||
Sbjct: 50732 gtcatgtgaactggattgcttt 50753
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>gb|AC147740.3| Xenopus tropicalis BAc clone ISB1-90K22 containing btg1 gene, complete
             cds, complete sequence
          Length = 51057

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 669   gaatgcaatcagttcagaaagc 690
             ||||||||||||||||||||||
Sbjct: 48414 gaatgcaatcagttcagaaagc 48393
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>gb|AY074557.1| Arabidopsis thaliana At1g48520/T1N15_12 mRNA, complete cds
          Length = 1653

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1581 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1522

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1521 aagctgctttgggttctc 1504
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>gb|AY054223.1| Arabidopsis thaliana At1g48520/T1N15_12 mRNA, complete cds
          Length = 1930

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1666 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1607

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1606 aagctgctttgggttctc 1589
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>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence
          Length = 195269

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 27     tgagtttacagctgcataagat 48
              ||||||||||||||||||||||
Sbjct: 176332 tgagtttacagctgcataagat 176353
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>emb|BX815942.1|CNS0AAKH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH19ZC05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1922

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1747 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1688

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1687 aagctgctttgggttctc 1670
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>emb|BX815581.1|CNS0AAGZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS73ZA01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1790

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1583 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1524

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1523 aagctgctttgggttctc 1506
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>gb|AF239836.1|AF239836 Arabidopsis thaliana Glu-tRNA(Gln) amidotransferase subunit B gene,
            complete cds; nuclear gene for chloroplast product
          Length = 1923

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 435  tttcatcacctgcccagcgaaaaatccctgcaacttggttttcccagcccgatactgctc 494
            |||||| ||||| ||||| ||| | || || | |||||||||||||   || ||||||||
Sbjct: 1653 tttcataacctggccagcaaaatagccttgaagcttggttttcccactgcggtactgctc 1594

                              
Query: 495  aagttgctttggattctc 512
            ||| |||||||| |||||
Sbjct: 1593 aagctgctttgggttctc 1576
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>gb|AC170425.1| Rhesus Macaque  BAC CH250-10K16 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 153799

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   taagtgtttttacaaaagaat 271
             |||||||||||||||||||||
Sbjct: 41244 taagtgtttttacaaaagaat 41224
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>emb|AL928857.15| Mouse DNA sequence from clone RP24-499A8 on chromosome 11 Contains the
             5' end of the Gemin5 gene for gem (nuclear organelle)
             associated protein 5,  a novel gene, a interferon gamma
             inducible protein (Ifi47) pseudogene, the Igtp gene for
             interferon gamma induced GTPase, the Gtpi-pending gene for
             interferon-g induced GTPase, a novel gene and one CpG
             island, complete sequence
          Length = 133633

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   tccactctgtagtgaaaagag 218
             |||||||||||||||||||||
Sbjct: 62943 tccactctgtagtgaaaagag 62963
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>emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 in linkage group 13,
              complete sequence
          Length = 210138

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 248    aagtaagtgtttttacaaaag 268
              |||||||||||||||||||||
Sbjct: 180818 aagtaagtgtttttacaaaag 180838
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>gb|AC107023.4| Homo sapiens 12 BAC RP11-115F18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 150353

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   taagtgtttttacaaaagaat 271
             |||||||||||||||||||||
Sbjct: 65120 taagtgtttttacaaaagaat 65140
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>dbj|AK088225.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430007K07
            product:unclassifiable, full insert sequence
          Length = 2756

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  gtcatgtgaactggattgctt 189
            |||||||||||||||||||||
Sbjct: 1617 gtcatgtgaactggattgctt 1597
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>ref|NG_002413.1| Mus musculus piggyBac transposable element derived 2 (Pgbd2)
            pseudogene (LOC263305) on chromosome 11
          Length = 1907

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 198  tccactctgtagtgaaaagag 218
            |||||||||||||||||||||
Sbjct: 1253 tccactctgtagtgaaaagag 1233
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>gb|AC157532.2| Pan troglodytes BAC clone CH251-305A6 from chromosome unknown, complete
              sequence
          Length = 204179

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    taagtgtttttacaaaagaat 271
              |||||||||||||||||||||
Sbjct: 151754 taagtgtttttacaaaagaat 151734
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>gb|AC157528.2| Pan troglodytes BAC clone CH251-422M6 from chromosome unknown, complete
             sequence
          Length = 154857

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   taagtgtttttacaaaagaat 271
             |||||||||||||||||||||
Sbjct: 52913 taagtgtttttacaaaagaat 52893
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>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete
             sequence
          Length = 204271

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   taagtgtttttacaaaagaat 271
             |||||||||||||||||||||
Sbjct: 13252 taagtgtttttacaaaagaat 13232
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>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I,
             complete sequence
          Length = 95295

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 468   cttggttttcccagcccgatactgctcaagttgctttggattctc 512
             |||||||||||||   || ||||||||||| |||||||| |||||
Sbjct: 57249 cttggttttcccactgcggtactgctcaagctgctttgggttctc 57205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,849,466
Number of Sequences: 3902068
Number of extensions: 7849466
Number of successful extensions: 153847
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153689
Number of HSP's gapped (non-prelim): 158
length of query: 733
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 710
effective length of database: 17,143,297,704
effective search space: 12171741369840
effective search space used: 12171741369840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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