ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2h20 |
|---|---|
| Clone Library Name | barley_pub |
>FUT1_PEA (Q9M5Q1) Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69)| (Xyloglucan alpha-(1,2)-fucosyltransferase) (PsFT1) Length = 565 Score = 198 bits (503), Expect = 1e-50 Identities = 98/194 (50%), Positives = 132/194 (68%), Gaps = 9/194 (4%) Frame = -2 Query: 583 PLQHVLDQVLSCVRREKLLP----ESTSSFSKTNASDQAVLVTSLSSWYYERIRDEYGG- 419 P QHVLDQVL+C +E +LP E + S +AVL+TSLSS Y+E++RD Y Sbjct: 379 PFQHVLDQVLACTLKESILPDVNREQNINSSSGTPKSKAVLITSLSSGYFEKVRDMYWEF 438 Query: 418 ----GRVAGGVHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLG 251 G V G ++QPSHEG Q+ H+++A +EMYLLS DVLVT+ +STFGYVAQGLG Sbjct: 439 PTETGEVVG-IYQPSHEGYQQTQKQFHNQKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLG 497 Query: 250 GVRPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYV 71 G++PWI+ E+ P PPC RAMS+EPCFH+P +YDC A++ D G ++P+V Sbjct: 498 GLKPWIL-------YKPENRTAPNPPCQRAMSMEPCFHAPPFYDCKAKRGTDTGALVPHV 550 Query: 70 RHCEDVSWGIKIAN 29 RHCED+SWG+K+ + Sbjct: 551 RHCEDMSWGLKLVD 564
>FUT1_ARATH (Q9SWH5) Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69)| (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1) Length = 558 Score = 187 bits (476), Expect = 2e-47 Identities = 94/192 (48%), Positives = 128/192 (66%), Gaps = 9/192 (4%) Frame = -2 Query: 583 PLQHVLDQVLSCVRREKLLPESTSSFSKTN----ASDQAVLVTSLSSWYYERIRDEY--- 425 P QHV+DQ+ SC ++EKLLPE + ++ +AVLVTSL++ Y E ++ Y Sbjct: 374 PFQHVMDQISSCTQKEKLLPEVDTLVERSRHVNTPKHKAVLVTSLNAGYAENLKSMYWEY 433 Query: 424 --GGGRVAGGVHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLG 251 G + G VHQPS EG Q+ H+ +AL+EMYLLS D LVT+ +STFGYVAQGLG Sbjct: 434 PTSTGEIIG-VHQPSQEGYQQTEKKMHNGKALAEMYLLSLTDNLVTSAWSTFGYVAQGLG 492 Query: 250 GVRPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYV 71 G++PWI+ E+ P+P C RAMS+EPCFHSP +YDC A+ +D G ++P+V Sbjct: 493 GLKPWIL-------YRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHV 545 Query: 70 RHCEDVSWGIKI 35 RHCED+SWG+K+ Sbjct: 546 RHCEDISWGLKL 557
>FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2)| Length = 539 Score = 176 bits (446), Expect = 5e-44 Identities = 90/191 (47%), Positives = 122/191 (63%), Gaps = 10/191 (5%) Frame = -2 Query: 571 VLDQVLSCVRREKLLP------ESTSSFSKTNASDQAVLVTSLSSWYYERIRDEYGGG-- 416 V Q++SCV+ E LLP E S+ ++VLVTSL++ Y+E ++ Y Sbjct: 354 VTKQIISCVQNENLLPRLSKGEEQYKQPSEEELKLKSVLVTSLTTGYFEILKTMYWENPT 413 Query: 415 --RVAGGVHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVR 242 R G+HQPSHEG Q+ H+++A +EMYLLS D LV + +STFGYVAQGLGG+R Sbjct: 414 VTRDVIGIHQPSHEGHQQTEKLMHNRKAWAEMYLLSLTDKLVISAWSTFGYVAQGLGGLR 473 Query: 241 PWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHC 62 WI+ +E+ P PPC RAMS +PCFH+P YYDC A+K D G V+P+VRHC Sbjct: 474 AWIL-------YKQENQTNPNPPCGRAMSPDPCFHAPPYYDCKAKKGTDTGNVVPHVRHC 526 Query: 61 EDVSWGIKIAN 29 ED+SWG+K+ + Sbjct: 527 EDISWGLKLVD 537
>FUT7_ARATH (Q9XI81) Probable fucosyltransferase 7 (EC 2.4.1.-) (AtFUT7)| Length = 526 Score = 160 bits (404), Expect = 3e-39 Identities = 86/198 (43%), Positives = 125/198 (63%), Gaps = 11/198 (5%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPE--STSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGG 416 QHV+DQ+++C +REKLLPE + TN S+ +AVLVTSL+ Y ++ Y Sbjct: 334 QHVMDQIVACTQREKLLPEFAAQEEAQVTNTSNPSKLKAVLVTSLNPEYSNNLKKMYWEH 393 Query: 415 RVAGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGG 248 G V+QPS E Q+ HD++AL+EMYLLS D LVT+ STFGYVAQGLGG Sbjct: 394 PTTTGDIVEVYQPSRERFQQTDKKLHDQKALAEMYLLSLTDKLVTSALSTFGYVAQGLGG 453 Query: 247 VRPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVR 68 ++PWI+ T + P PPC R +S+EPCF +P + C A+K ++ K++P+VR Sbjct: 454 LKPWIL-------YTPKKFKSPNPPCGRVISMEPCFLTPPVHGCEAKKGINTAKIVPFVR 506 Query: 67 HCEDV-SWGIKIANESNH 17 HCED+ +G+K+ +++ + Sbjct: 507 HCEDLRHYGLKLVDDTKN 524
>FUT4_ARATH (Q9SJP2) Probable fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4)| Length = 503 Score = 152 bits (384), Expect = 7e-37 Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 10/194 (5%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPE-STSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGR 413 QHV+DQV+SC +REKLLPE +T SK N S+ +AVLVTSLS Y +++ + + Sbjct: 317 QHVMDQVISCTQREKLLPELATQEESKVNISNIPKSKAVLVTSLSPEYSKKLENMFSERA 376 Query: 412 VAGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGV 245 G V+QPS E Q+ HD++AL+EMYLLS D +V + STFGYVA LGG+ Sbjct: 377 NMTGEIIKVYQPSGERYQQTDKKVHDQKALAEMYLLSLTDNIVASSRSTFGYVAYSLGGL 436 Query: 244 RPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARK-DVDVGKVLPYVR 68 +PW++ D P+PPCVR+ S+EPCF +P + C + GKV+P+VR Sbjct: 437 KPWLL-------YLPNDNKAPDPPCVRSTSMEPCFLTPPTHGCEPDAWGTESGKVVPFVR 489 Query: 67 HCEDVSWGIKIANE 26 +CED+ WG+K+ +E Sbjct: 490 YCEDI-WGLKLFDE 502
>FUT10_ARATH (Q9SJP6) Putative fucosyltransferase 10 (EC 2.4.1.-) (AtFUT10)| Length = 514 Score = 149 bits (376), Expect = 6e-36 Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 8/186 (4%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPESTSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGRV 410 +HV+DQV++C +REKLLPE SK N S + VLV SL Y + + + Sbjct: 329 KHVMDQVVACTQREKLLPEFEEE-SKVNISKPPKLKVVLVASLYPEYSVNLTNMFLARPS 387 Query: 409 AGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVR 242 + G V+QPS E Q+ SHD++AL+EMYLLS D +VT+G+STFGYV+ LGG++ Sbjct: 388 STGEIIEVYQPSAERVQQTDKKSHDQKALAEMYLLSLTDNIVTSGWSTFGYVSYSLGGLK 447 Query: 241 PWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHC 62 PW++ P+ + P PPCVR+ S+EPC+H+P + C A + GK+LP+VRHC Sbjct: 448 PWLL-YQPV------NFTTPNPPCVRSKSMEPCYHTPPSHGCEADWGTNSGKILPFVRHC 500 Query: 61 EDVSWG 44 ED+ +G Sbjct: 501 EDMMYG 506
>FUT8_ARATH (Q9XI78) Probable fucosyltransferase 8 (EC 2.4.1.-) (AtFUT8)| Length = 500 Score = 148 bits (373), Expect = 1e-35 Identities = 85/194 (43%), Positives = 120/194 (61%), Gaps = 9/194 (4%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPES---TSSFSKTNASDQ--AVLVTSLSSWYYERIRDEYGGGR 413 QHV+DQ+L+C +REKLLPE + + T+ S + AVLVTSL Y E +R Y G Sbjct: 318 QHVMDQILACTQREKLLPEVFVLETQVTNTSRSSKLKAVLVTSLYPEYSEILRQMYWKGP 377 Query: 412 VAGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGV 245 + G ++QPS E Q+ + HD++AL+E+YLLS D +VT+ STFGYVAQGLGG+ Sbjct: 378 SSTGEIIQIYQPSQEIYQQTDNKLHDQKALAEIYLLSLTDYIVTSDSSTFGYVAQGLGGL 437 Query: 244 RPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRH 65 +PWI+ ++ PEPPCVRA+S+EPCF Y C A+K + P+V + Sbjct: 438 KPWIL-------YKPKNHTAPEPPCVRAVSMEPCFLRAPLYGCQAKK----VNITPFVMY 486 Query: 64 CEDVSWGIKIANES 23 CED G+K+ + + Sbjct: 487 CEDRITGLKLVDSN 500
>FUT5_ARATH (Q9SJP4) Probable fucosyltransferase 5 (EC 2.4.1.-) (AtFUT5)| Length = 533 Score = 144 bits (364), Expect = 1e-34 Identities = 84/196 (42%), Positives = 122/196 (62%), Gaps = 12/196 (6%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPE-STSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGR 413 +HV+DQV+SC +REKLLPE +T SK N S ++VLV SL + + + + Sbjct: 346 KHVIDQVISCTQREKLLPEFATPEESKVNISKTPKLKSVLVASLYPEFSGNLTNMFSKRP 405 Query: 412 VAGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGV 245 + G V+QPS E Q+ SHD++AL+EMYLLS D +VT+ STFGYV+ LGG+ Sbjct: 406 SSTGEIVEVYQPSGERVQQTDKKSHDQKALAEMYLLSLTDNIVTSARSTFGYVSYSLGGL 465 Query: 244 RPWIM--PTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYV 71 +PW++ PT + P PPCVR+ S+EPC+ +P + C A + GK+LP+V Sbjct: 466 KPWLLYQPT---------NFTTPNPPCVRSKSMEPCYLTPPSHGCEADWGTNSGKILPFV 516 Query: 70 RHCEDVSW-GIKIANE 26 RHCED+ + G+K+ +E Sbjct: 517 RHCEDLIYGGLKLYDE 532
>FUT6_ARATH (Q9XI80) Fucosyltransferase 6 (EC 2.4.1.-) (AtFUT6)| Length = 537 Score = 143 bits (360), Expect = 4e-34 Identities = 84/196 (42%), Positives = 119/196 (60%), Gaps = 12/196 (6%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPESTSSFS-KTNASD----QAVLVTSLSSWYYERIRDEYGGGR 413 QHV+DQV++C RRE LLPE + K N S +AVLVTSL Y E +++ Y Sbjct: 350 QHVMDQVVACTRRENLLPEPAAQEEPKVNISRSQKLKAVLVTSLYPEYSETLKNMYWERP 409 Query: 412 VAGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGV 245 + G V+QPS E Q+ HD++AL+EMYLLS D +VT+ STFGYVA LGG+ Sbjct: 410 SSTGEIIEVYQPSGERVQQTDKKLHDQKALAEMYLLSLTDKIVTSARSTFGYVAHSLGGL 469 Query: 244 RPWIM--PTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYV 71 +PW++ PT P P+PPC+++ S++PC +P + C + GKV+P+V Sbjct: 470 KPWLLYQPTGP---------TAPDPPCIQSTSMDPCHLTPPSHGCEPEWGTNSGKVVPFV 520 Query: 70 RHCED-VSWGIKIANE 26 RHCED + G+K+ +E Sbjct: 521 RHCEDRGNDGLKLFDE 536
>FUT9_ARATH (Q9XI77) Probable fucosyltransferase 9 (EC 2.4.1.-) (AtFUT9)| Length = 435 Score = 110 bits (276), Expect = 2e-24 Identities = 60/127 (47%), Positives = 79/127 (62%) Frame = -2 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTA 221 V+QPS E Q+ HD++AL+E+YLLS D LVT+ STFGYVAQGLGG++PWI+ Sbjct: 318 VYQPSGEKIQQTDKKLHDQKALAEIYLLSLTDELVTSTRSTFGYVAQGLGGLKPWIL--- 374 Query: 220 PIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGI 41 D P PPCVRAMS+EPCF + C A+ K+ P+VR CED G+ Sbjct: 375 ----YEPRDKKTPNPPCVRAMSMEPCFLRAPLHGCQAK----TIKIPPFVRICEDWKTGL 426 Query: 40 KIANESN 20 K+ + S+ Sbjct: 427 KLVDVSD 433
>FUT3_ARATH (Q9CA71) Probable fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3)| Length = 493 Score = 107 bits (266), Expect = 3e-23 Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 10/164 (6%) Frame = -2 Query: 577 QHVLDQVLSCVRREKLLPE-----STSSFSKTNASDQAVLVTSLSSWYYERIRDEYGGGR 413 QH++DQ+L+C R KLLPE + S N +AV ++S S Y++ IRD Y Sbjct: 335 QHLIDQILACGTRHKLLPEVDKQRNLPSSQVLNRKSKAVFISSSSPGYFKSIRDVYWENP 394 Query: 412 VAGG----VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTG-FSTFGYVAQGLGG 248 G VH+PS++ QK KRA +E+YLLS D LV TG +S+ VA GLGG Sbjct: 395 TVMGEIISVHKPSYKDYQKTPRNMESKRAWAEIYLLSCSDALVVTGLWSSLVEVAHGLGG 454 Query: 247 VRPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDC 116 ++PW++ A E+ EP CV+A S+EPC + ++ C Sbjct: 455 LKPWVLNKA-------ENGTAHEPYCVKARSIEPCSQATLFHGC 491
>TGM2_CHICK (Q01841) Protein-glutamine gamma-glutamyltransferase 2 (EC| 2.3.2.13) (Tissue transglutaminase) (TGase C) (TGC) (TG(C)) (Tranglutaminase-2) Length = 689 Score = 33.9 bits (76), Expect = 0.37 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -2 Query: 172 CVRAMSVEPCFHSPSYYDCTARKD-VDVGKVLPYVRHCEDVSWGIKIANESNHW 14 C+ + + P F DC+ R D V +G+V+ + +C D G+ + NH+ Sbjct: 193 CLEMLDINPKFLRDQNLDCSRRNDPVYIGRVVSAMVNCNDEDHGVLLGRWDNHY 246
>LCN12_MOUSE (Q6JVL5) Epididymal-specific lipocalin-12 precursor| Length = 193 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 18 WLLSLAILIPQLTSSQCRTYGSTFPTSTSFLAVQS**DGEW 140 W L L + +PQ+ SQ FP TSF + Q GEW Sbjct: 5 WALWLILTLPQILESQISAMSQGFPQMTSFQSDQF--QGEW 43
>INHBB_CHICK (P27093) Inhibin beta B chain precursor (Activin beta-B chain)| Length = 391 Score = 30.8 bits (68), Expect = 3.1 Identities = 30/123 (24%), Positives = 55/123 (44%) Frame = -2 Query: 499 TNASDQAVLVTSLSSWYYERIRDEYGGGRVAGGVHQPSHEGQQKWGDTSHDKRALSEMYL 320 T+A +A +VT+L + ++R++ G V PS +GQ G +HD +SE+ Sbjct: 79 THAVPKAAMVTALRKLHAGKVRED-------GRVEIPSLDGQASAGPPAHD--PVSEIIS 129 Query: 319 LSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCF 140 + D L ++ + +++ G + + A +W K V E R + V+ F Sbjct: 130 FAETDDLASSRVRLYFFISN--EGNQNLFVVQASLWLYLKLLPYVLEKGSRRKVRVKVYF 187 Query: 139 HSP 131 P Sbjct: 188 QDP 190
>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 868 Score = 30.4 bits (67), Expect = 4.0 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 21/103 (20%) Frame = -2 Query: 259 GLGGVRPWIMPTAPIWSETKEDVPVPEP--PCVRAMSV------EPCFHSPSYYDCTARK 104 G+ R W P + +T DVPVPE P + V P P +Y+C+ K Sbjct: 426 GISRQRYWGCPIPIVHCDTCGDVPVPEDQLPVILPEDVVPDGAGSPLARMPQFYECSCPK 485 Query: 103 ------------DVDVGKVLPYVRHCE-DVSWGIKIANESNHW 14 D V Y R+ G+ N +NHW Sbjct: 486 CGAPAKRETDTMDTFVESSWYYARYASPHYEGGLVEPNAANHW 528
>ZN272_HUMAN (Q14592) Zinc finger protein 272 (Zinc finger protein 460) (Zinc| finger protein HZF8) Length = 562 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2 Query: 376 QQKWGDTSHDKRALSEMYLLSTCDVLVTTGFST 278 Q++WG +RAL +L TC +LV G ST Sbjct: 24 QEEWGQLDVTQRALYVEVMLETCGLLVALGDST 56
>KTHY_PSEAE (Q9HZN8) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)| Length = 210 Score = 30.0 bits (66), Expect = 5.3 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 4/122 (3%) Frame = +2 Query: 209 GPDGCGGHDPRPYPAEPLR----DVPKRREAGGDEHVAGAEQVHLAQXXXXXXXXXXXXX 376 GP+G G R Y AE LR +V RE GG ++ LA Sbjct: 10 GPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLL 69 Query: 377 XXXXXXXHAAGDPASAVLVPDPLVVPRAQRSDQDSLVGCVGLGKRRRALREKLLPADARE 556 H AG A+ ++ R + G GL + R A E + D R Sbjct: 70 MFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRP 129 Query: 557 DL 562 DL Sbjct: 130 DL 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,699,578 Number of Sequences: 219361 Number of extensions: 1448020 Number of successful extensions: 5950 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5918 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
