ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2h20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464933.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2057 Score = 184 bits (93), Expect = 2e-43 Identities = 200/236 (84%), Gaps = 6/236 (2%) Strand = Plus / Minus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||| Sbjct: 1629 ggcatgatccacggccgcaaccccgcgagcccctgcgcgacgtagccgaaggtggagaag 1570 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1569 ccggtggtgagcagcgcgtcgcaggtgctgagcaggtacatctcgctcagcgccctcatg 1510 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct: 1509 tcgtgcgccgtgtcgcccatccgctgcaacccctcgtggctcggctggtgcacgccaccg 1450 Query: 408 gcgaccctgcctccgccgtactcgtccctgatcctctcgtagtaccacgagctcag 463 | ||| || ||| |||||| | |||| |||||||||||||||||||||| Sbjct: 1449 ------ccgccgccaccgagctcgtcgcggatcttctcgtagtaccacgagctcag 1400 Score = 63.9 bits (32), Expect = 6e-07 Identities = 91/110 (82%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 45 ccccagctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtcc 104 |||||||| |||||||| ||| ||||||||||||||| |||||| || | || ||| Sbjct: 1812 ccccagctgacgtcctcgcagcgccgcacgtacggcaccaccttgccaatgtcgtcgtag 1753 Query: 105 ttcc---tcgccgtgcagtcgtagtaggacggcgagtggaagcatggctc 151 |||| |||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct: 1752 ttccgcctcgccgcgcactcgtagtacgacggcgagtggaagcacggctc 1703
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 184 bits (93), Expect = 2e-43 Identities = 200/236 (84%), Gaps = 6/236 (2%) Strand = Plus / Plus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||| Sbjct: 10087770 ggcatgatccacggccgcaaccccgcgagcccctgcgcgacgtagccgaaggtggagaag 10087829 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10087830 ccggtggtgagcagcgcgtcgcaggtgctgagcaggtacatctcgctcagcgccctcatg 10087889 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct: 10087890 tcgtgcgccgtgtcgcccatccgctgcaacccctcgtggctcggctggtgcacgccaccg 10087949 Query: 408 gcgaccctgcctccgccgtactcgtccctgatcctctcgtagtaccacgagctcag 463 | ||| || ||| |||||| | |||| |||||||||||||||||||||| Sbjct: 10087950 ------ccgccgccaccgagctcgtcgcggatcttctcgtagtaccacgagctcag 10087999 Score = 182 bits (92), Expect = 9e-43 Identities = 158/180 (87%) Strand = Plus / Minus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||| ||||||||| ||||| |||||||||||||| |||| ||||| || |||||| Sbjct: 10129888 ggcatgagccacggccgctccccggcgagcccctgcgcgtcgtagccaaaggtggagaag 10129829 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| || Sbjct: 10129828 ccggtggtgagcagcgcgtctcaggtgctgagcaggtacatctcgctcagcgccctcatg 10129769 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||||||| Sbjct: 10129768 tcgtgcgccgtgtcgcccatccgctgccacccctcgtggctcggctggtgcacgccgccg 10129709 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||||||||||||||||| |||||||| |||||||| ||||| |||| || |||||||| Sbjct: 32212094 cccgccgagcccctgcgccacgtacccgaacgtcgaccagccgctggtcaccagcacgtc 32212035 Query: 308 gcaggtgctgagcaggtacatctc 331 ||| ||| || ||||||||||| Sbjct: 32212034 gcacaggctcaggaggtacatctc 32212011 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 106 tcctcgccgtgcagtcgtagtaggacggcgagtggaagcatggctcgacggacatcgctc 165 ||||||||| |||||||||||| ||||||||||||||||| ||||| ||| ||| | Sbjct: 10130007 tcctcgccgcgcagtcgtagtacgacggcgagtggaagcacggctccggcgacgccgccc 10129948 Query: 166 gcacacacggcggttccggcacc 188 |||| |||||||| ||||||||| Sbjct: 10129947 gcacgcacggcggctccggcacc 10129925 Score = 63.9 bits (32), Expect = 6e-07 Identities = 91/110 (82%), Gaps = 3/110 (2%) Strand = Plus / Plus Query: 45 ccccagctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtcc 104 |||||||| |||||||| ||| ||||||||||||||| |||||| || | || ||| Sbjct: 10087587 ccccagctgacgtcctcgcagcgccgcacgtacggcaccaccttgccaatgtcgtcgtag 10087646 Query: 105 ttcc---tcgccgtgcagtcgtagtaggacggcgagtggaagcatggctc 151 |||| |||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct: 10087647 ttccgcctcgccgcgcactcgtagtacgacggcgagtggaagcacggctc 10087696 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 32211963 cctcgtggctcggctggtgcacgc 32211940 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggtgcac 400 ||||| || ||||||||||||||||||||| Sbjct: 32197258 ctgctcccgctcgtggctcggctggtgcac 32197229 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggt 396 ||||||| |||||||||||||||||| Sbjct: 32185750 ctgctgctcctcgtggctcggctggt 32185725 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 115 tgcagtcgtagtaggacggcgagtggaagcatggctc 151 ||||||||||| | | ||||||||||||||| ||||| Sbjct: 32212209 tgcagtcgtagaacggcggcgagtggaagcacggctc 32212173
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0413A11 Length = 188440 Score = 184 bits (93), Expect = 2e-43 Identities = 200/236 (84%), Gaps = 6/236 (2%) Strand = Plus / Plus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||| Sbjct: 162463 ggcatgatccacggccgcaaccccgcgagcccctgcgcgacgtagccgaaggtggagaag 162522 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 162523 ccggtggtgagcagcgcgtcgcaggtgctgagcaggtacatctcgctcagcgccctcatg 162582 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct: 162583 tcgtgcgccgtgtcgcccatccgctgcaacccctcgtggctcggctggtgcacgccaccg 162642 Query: 408 gcgaccctgcctccgccgtactcgtccctgatcctctcgtagtaccacgagctcag 463 | ||| || ||| |||||| | |||| |||||||||||||||||||||| Sbjct: 162643 ------ccgccgccaccgagctcgtcgcggatcttctcgtagtaccacgagctcag 162692 Score = 63.9 bits (32), Expect = 6e-07 Identities = 91/110 (82%), Gaps = 3/110 (2%) Strand = Plus / Plus Query: 45 ccccagctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtcc 104 |||||||| |||||||| ||| ||||||||||||||| |||||| || | || ||| Sbjct: 162280 ccccagctgacgtcctcgcagcgccgcacgtacggcaccaccttgccaatgtcgtcgtag 162339 Query: 105 ttcc---tcgccgtgcagtcgtagtaggacggcgagtggaagcatggctc 151 |||| |||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct: 162340 ttccgcctcgccgcgcactcgtagtacgacggcgagtggaagcacggctc 162389
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 184 bits (93), Expect = 2e-43 Identities = 200/236 (84%), Gaps = 6/236 (2%) Strand = Plus / Plus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||| Sbjct: 35464 ggcatgatccacggccgcaaccccgcgagcccctgcgcgacgtagccgaaggtggagaag 35523 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 35524 ccggtggtgagcagcgcgtcgcaggtgctgagcaggtacatctcgctcagcgccctcatg 35583 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct: 35584 tcgtgcgccgtgtcgcccatccgctgcaacccctcgtggctcggctggtgcacgccaccg 35643 Query: 408 gcgaccctgcctccgccgtactcgtccctgatcctctcgtagtaccacgagctcag 463 | ||| || ||| |||||| | |||| |||||||||||||||||||||| Sbjct: 35644 ------ccgccgccaccgagctcgtcgcggatcttctcgtagtaccacgagctcag 35693 Score = 182 bits (92), Expect = 9e-43 Identities = 158/180 (87%) Strand = Plus / Minus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||| ||||||||| ||||| |||||||||||||| |||| ||||| || |||||| Sbjct: 77582 ggcatgagccacggccgctccccggcgagcccctgcgcgtcgtagccaaaggtggagaag 77523 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| || Sbjct: 77522 ccggtggtgagcagcgcgtctcaggtgctgagcaggtacatctcgctcagcgccctcatg 77463 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||||||| Sbjct: 77462 tcgtgcgccgtgtcgcccatccgctgccacccctcgtggctcggctggtgcacgccgccg 77403 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 106 tcctcgccgtgcagtcgtagtaggacggcgagtggaagcatggctcgacggacatcgctc 165 ||||||||| |||||||||||| ||||||||||||||||| ||||| ||| ||| | Sbjct: 77701 tcctcgccgcgcagtcgtagtacgacggcgagtggaagcacggctccggcgacgccgccc 77642 Query: 166 gcacacacggcggttccggcacc 188 |||| |||||||| ||||||||| Sbjct: 77641 gcacgcacggcggctccggcacc 77619 Score = 63.9 bits (32), Expect = 6e-07 Identities = 91/110 (82%), Gaps = 3/110 (2%) Strand = Plus / Plus Query: 45 ccccagctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtcc 104 |||||||| |||||||| ||| ||||||||||||||| |||||| || | || ||| Sbjct: 35281 ccccagctgacgtcctcgcagcgccgcacgtacggcaccaccttgccaatgtcgtcgtag 35340 Query: 105 ttcc---tcgccgtgcagtcgtagtaggacggcgagtggaagcatggctc 151 |||| |||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct: 35341 ttccgcctcgccgcgcactcgtagtacgacggcgagtggaagcacggctc 35390
>dbj|AK071664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B19, full insert sequence Length = 2056 Score = 184 bits (93), Expect = 2e-43 Identities = 200/236 (84%), Gaps = 6/236 (2%) Strand = Plus / Minus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||| Sbjct: 1628 ggcatgatccacggccgcaaccccgcgagcccctgcgcgacgtagccgaaggtggagaag 1569 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1568 ccggtggtgagcagcgcgtcgcaggtgctgagcaggtacatctcgctcagcgccctcatg 1509 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct: 1508 tcgtgcgccgtgtcgcccatccgctgcaacccctcgtggctcggctggtgcacgccaccg 1449 Query: 408 gcgaccctgcctccgccgtactcgtccctgatcctctcgtagtaccacgagctcag 463 | ||| || ||| |||||| | |||| |||||||||||||||||||||| Sbjct: 1448 ------ccgccgccaccgagctcgtcgcggatcttctcgtagtaccacgagctcag 1399 Score = 63.9 bits (32), Expect = 6e-07 Identities = 91/110 (82%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 45 ccccagctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtcc 104 |||||||| |||||||| ||| ||||||||||||||| |||||| || | || ||| Sbjct: 1811 ccccagctgacgtcctcgcagcgccgcacgtacggcaccaccttgccaatgtcgtcgtag 1752 Query: 105 ttcc---tcgccgtgcagtcgtagtaggacggcgagtggaagcatggctc 151 |||| |||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct: 1751 ttccgcctcgccgcgcactcgtagtacgacggcgagtggaagcacggctc 1702
>dbj|AK060517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A08, full insert sequence Length = 1612 Score = 184 bits (93), Expect = 2e-43 Identities = 200/236 (84%), Gaps = 6/236 (2%) Strand = Plus / Minus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||||||||||||| | ||| ||||||||||||||||||| || || || |||||| Sbjct: 1153 ggcatgatccacggccgcaaccccgcgagcccctgcgcgacgtagccgaaggtggagaag 1094 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1093 ccggtggtgagcagcgcgtcgcaggtgctgagcaggtacatctcgctcagcgccctcatg 1034 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct: 1033 tcgtgcgccgtgtcgcccatccgctgcaacccctcgtggctcggctggtgcacgccaccg 974 Query: 408 gcgaccctgcctccgccgtactcgtccctgatcctctcgtagtaccacgagctcag 463 | ||| || ||| |||||| | |||| |||||||||||||||||||||| Sbjct: 973 ------ccgccgccaccgagctcgtcgcggatcttctcgtagtaccacgagctcag 924 Score = 63.9 bits (32), Expect = 6e-07 Identities = 91/110 (82%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 45 ccccagctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtcc 104 |||||||| |||||||| ||| ||||||||||||||| |||||| || | || ||| Sbjct: 1336 ccccagctgacgtcctcgcagcgccgcacgtacggcaccaccttgccaatgtcgtcgtag 1277 Query: 105 ttcc---tcgccgtgcagtcgtagtaggacggcgagtggaagcatggctc 151 |||| |||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct: 1276 ttccgcctcgccgcgcactcgtagtacgacggcgagtggaagcacggctc 1227
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 182 bits (92), Expect = 9e-43 Identities = 158/180 (87%) Strand = Plus / Minus Query: 228 ggcatgatccacggccgtaccccgccgagcccctgcgcgacgtacccaaacgtcgagaag 287 ||||||| ||||||||| ||||| |||||||||||||| |||| ||||| || |||||| Sbjct: 2254 ggcatgagccacggccgctccccggcgagcccctgcgcgtcgtagccaaaggtggagaag 2195 Query: 288 ccggtggtgacgagcacgtcgcaggtgctgagcaggtacatctcgctcagcgccctcttg 347 |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| || Sbjct: 2194 ccggtggtgagcagcgcgtctcaggtgctgagcaggtacatctcgctcagcgccctcatg 2135 Query: 348 tcgtgggacgtgtccccccacttctgctgcccctcgtggctcggctggtgcacgccgccg 407 ||||| | |||||| ||| | |||| ||||||||||||||||||||||||||||||| Sbjct: 2134 tcgtgcgccgtgtcgcccatccgctgccacccctcgtggctcggctggtgcacgccgccg 2075 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 106 tcctcgccgtgcagtcgtagtaggacggcgagtggaagcatggctcgacggacatcgctc 165 ||||||||| |||||||||||| ||||||||||||||||| ||||| ||| ||| | Sbjct: 2373 tcctcgccgcgcagtcgtagtacgacggcgagtggaagcacggctccggcgacgccgccc 2314 Query: 166 gcacacacggcggttccggcacc 188 |||| |||||||| ||||||||| Sbjct: 2313 gcacgcacggcggctccggcacc 2291
>gb|BT009236.1| Triticum aestivum clone wle1n.pk0109.e10:fis, full insert mRNA sequence Length = 1262 Score = 75.8 bits (38), Expect = 1e-10 Identities = 125/154 (81%) Strand = Plus / Minus Query: 34 caatcttgatcccccagctcacgtcctcacagtgccgcacgtacggcagcaccttcccca 93 ||||||||| |||||||| |||||||| ||||||| ||||||||||| |||||| |||| Sbjct: 988 caatcttgaggccccagctgacgtcctcgcagtgcctcacgtacggcaccaccttgccca 929 Query: 94 catccacgtccttcctcgccgtgcagtcgtagtaggacggcgagtggaagcatggctcga 153 || ||||| || | ||| |||||||| |||||| | | ||||||||| ||||||| Sbjct: 928 ggtcggcgtccctcttggccttgcagtcgaagtagggggcctggtggaagcacggctcga 869 Query: 154 cggacatcgctcgcacacacggcggttccggcac 187 |||||| || || | |||||||| |||||||| Sbjct: 868 tggacatggcacggccgcacggcggctccggcac 835 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 253 cgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtcgcagg 312 |||| |||||||||||||| || || || ||||||||| |||||| |||||| |||| Sbjct: 790 cgaggccctgcgcgacgtagccgaaggtggagaagccgctggtgatgagcacatcgctca 731 Query: 313 tgctgagcaggtacatctc 331 |||| |||||||| ||||| Sbjct: 730 tgctcagcaggtagatctc 712
>ref|XM_467944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2043 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||||||||||||||||| |||||||| |||||||| ||||| |||| || |||||||| Sbjct: 1664 cccgccgagcccctgcgccacgtacccgaacgtcgaccagccgctggtcaccagcacgtc 1605 Query: 308 gcaggtgctgagcaggtacatctc 331 ||| ||| || ||||||||||| Sbjct: 1604 gcacaggctcaggaggtacatctc 1581 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 1533 cctcgtggctcggctggtgcacgc 1510 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 115 tgcagtcgtagtaggacggcgagtggaagcatggctc 151 ||||||||||| | | ||||||||||||||| ||||| Sbjct: 1779 tgcagtcgtagaacggcggcgagtggaagcacggctc 1743
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||||||||||||||||| |||||||| |||||||| ||||| |||| || |||||||| Sbjct: 56107 cccgccgagcccctgcgccacgtacccgaacgtcgaccagccgctggtcaccagcacgtc 56048 Query: 308 gcaggtgctgagcaggtacatctc 331 ||| ||| || ||||||||||| Sbjct: 56047 gcacaggctcaggaggtacatctc 56024 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 55976 cctcgtggctcggctggtgcacgc 55953 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggtgcac 400 ||||| || ||||||||||||||||||||| Sbjct: 41271 ctgctcccgctcgtggctcggctggtgcac 41242 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggt 396 ||||||| |||||||||||||||||| Sbjct: 29763 ctgctgctcctcgtggctcggctggt 29738 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 115 tgcagtcgtagtaggacggcgagtggaagcatggctc 151 ||||||||||| | | ||||||||||||||| ||||| Sbjct: 56222 tgcagtcgtagaacggcggcgagtggaagcacggctc 56186
>dbj|AK102499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095B15, full insert sequence Length = 2043 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||||||||||||||||| |||||||| |||||||| ||||| |||| || |||||||| Sbjct: 1664 cccgccgagcccctgcgccacgtacccgaacgtcgaccagccgctggtcaccagcacgtc 1605 Query: 308 gcaggtgctgagcaggtacatctc 331 ||| ||| || ||||||||||| Sbjct: 1604 gcacaggctcaggaggtacatctc 1581 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 1533 cctcgtggctcggctggtgcacgc 1510 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 115 tgcagtcgtagtaggacggcgagtggaagcatggctc 151 ||||||||||| | | ||||||||||||||| ||||| Sbjct: 1779 tgcagtcgtagaacggcggcgagtggaagcacggctc 1743
>gb|AY112574.1| Zea mays CL17884_1 mRNA sequence Length = 453 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 49 agctcacgtcctcacagtgccgcacgtacggcagcaccttccccacatccacgtccttcc 108 ||||||||||||| ||||||| |||||| |||| ||||| |||| ||| |||||||| Sbjct: 266 agctcacgtcctcgcagtgcctcacgtaaggcactaccttgcccaaatcggtgtccttcc 325 Query: 109 tcgccgtgcagtcgtag 125 ||||| ||||||||||| Sbjct: 326 tcgccttgcagtcgtag 342
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||| ||||||||||||| |||||||| |||||||| | ||| |||| || ||| |||| Sbjct: 5737346 cccggcgagcccctgcgccacgtacccgaacgtcgaccacccgctggtcaccagcgcgtc 5737287 Query: 308 gcaggtgctgagcaggtacatctcg 332 | || |||||||||||| |||||| Sbjct: 5737286 ggagaggctgagcaggtatatctcg 5737262 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||| ||||||||||||| |||||||| |||||||| | ||| |||| || ||| |||| Sbjct: 5729769 cccggcgagcccctgcgccacgtacccgaacgtcgaccacccgctggtcaccagcgcgtc 5729828 Query: 308 gcaggtgctgagcaggtacatctc 331 | || |||||||||||| ||||| Sbjct: 5729829 ggagaggctgagcaggtatatctc 5729852 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcga 283 |||||||||||||||||| |||||||| |||||||| Sbjct: 5723334 cccgccgagcccctgcgccacgtacccgaacgtcga 5723369 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgcc 403 ||||||||||||||||||||||||| Sbjct: 5737215 cctcgtggctcggctggtgcacgcc 5737191 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 5744391 cctcgtggctcggctggtgcacgc 5744368 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 5729900 cctcgtggctcggctggtgcacgc 5729923 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 370 tctgctgcccctcgtggctcggctggt 396 |||||||| |||||||||||||||||| Sbjct: 5723456 tctgctgctcctcgtggctcggctggt 5723482 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 ctcgtggctcggctggtgcacgc 402 ||||||||||||||||||||||| Sbjct: 5715392 ctcgtggctcggctggtgcacgc 5715370 Score = 40.1 bits (20), Expect = 8.1 Identities = 53/64 (82%) Strand = Plus / Plus Query: 269 gtacccaaacgtcgagaagccggtggtgacgagcacgtcgcaggtgctgagcaggtacat 328 |||||| |||||||| | |||| |||||| ||||||||| | |||||||||||| || Sbjct: 5716433 gtacccgaacgtcgacatgccgctggtgagcagcacgtcggcgaagctgagcaggtagat 5716492 Query: 329 ctcg 332 |||| Sbjct: 5716493 ctcg 5716496
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||| ||||||||||||| |||||||| |||||||| | ||| |||| || ||| |||| Sbjct: 52875 cccggcgagcccctgcgccacgtacccgaacgtcgaccacccgctggtcaccagcgcgtc 52816 Query: 308 gcaggtgctgagcaggtacatctcg 332 | || |||||||||||| |||||| Sbjct: 52815 ggagaggctgagcaggtatatctcg 52791 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||| ||||||||||||| |||||||| |||||||| | ||| |||| || ||| |||| Sbjct: 45298 cccggcgagcccctgcgccacgtacccgaacgtcgaccacccgctggtcaccagcgcgtc 45357 Query: 308 gcaggtgctgagcaggtacatctc 331 | || |||||||||||| ||||| Sbjct: 45358 ggagaggctgagcaggtatatctc 45381 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcga 283 |||||||||||||||||| |||||||| |||||||| Sbjct: 38863 cccgccgagcccctgcgccacgtacccgaacgtcga 38898 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgcc 403 ||||||||||||||||||||||||| Sbjct: 52744 cctcgtggctcggctggtgcacgcc 52720 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 59920 cctcgtggctcggctggtgcacgc 59897 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 45429 cctcgtggctcggctggtgcacgc 45452 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 370 tctgctgcccctcgtggctcggctggt 396 |||||||| |||||||||||||||||| Sbjct: 38985 tctgctgctcctcgtggctcggctggt 39011 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 ctcgtggctcggctggtgcacgc 402 ||||||||||||||||||||||| Sbjct: 30921 ctcgtggctcggctggtgcacgc 30899 Score = 40.1 bits (20), Expect = 8.1 Identities = 53/64 (82%) Strand = Plus / Plus Query: 269 gtacccaaacgtcgagaagccggtggtgacgagcacgtcgcaggtgctgagcaggtacat 328 |||||| |||||||| | |||| |||||| ||||||||| | |||||||||||| || Sbjct: 31962 gtacccgaacgtcgacatgccgctggtgagcagcacgtcggcgaagctgagcaggtagat 32021 Query: 329 ctcg 332 |||| Sbjct: 32022 ctcg 32025
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||| ||||||||||||| |||||||| |||||||| | ||| |||| || ||| |||| Sbjct: 129493 cccggcgagcccctgcgccacgtacccgaacgtcgaccacccgctggtcaccagcgcgtc 129434 Query: 308 gcaggtgctgagcaggtacatctcg 332 | || |||||||||||| |||||| Sbjct: 129433 ggagaggctgagcaggtatatctcg 129409 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcgagaagccggtggtgacgagcacgtc 307 |||| ||||||||||||| |||||||| |||||||| | ||| |||| || ||| |||| Sbjct: 121916 cccggcgagcccctgcgccacgtacccgaacgtcgaccacccgctggtcaccagcgcgtc 121975 Query: 308 gcaggtgctgagcaggtacatctc 331 | || |||||||||||| ||||| Sbjct: 121976 ggagaggctgagcaggtatatctc 121999 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcga 283 |||||||||||||||||| |||||||| |||||||| Sbjct: 115481 cccgccgagcccctgcgccacgtacccgaacgtcga 115516 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgcc 403 ||||||||||||||||||||||||| Sbjct: 129362 cctcgtggctcggctggtgcacgcc 129338 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 136538 cctcgtggctcggctggtgcacgc 136515 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 122047 cctcgtggctcggctggtgcacgc 122070 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 370 tctgctgcccctcgtggctcggctggt 396 |||||||| |||||||||||||||||| Sbjct: 115603 tctgctgctcctcgtggctcggctggt 115629 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 ctcgtggctcggctggtgcacgc 402 ||||||||||||||||||||||| Sbjct: 107539 ctcgtggctcggctggtgcacgc 107517 Score = 40.1 bits (20), Expect = 8.1 Identities = 53/64 (82%) Strand = Plus / Plus Query: 269 gtacccaaacgtcgagaagccggtggtgacgagcacgtcgcaggtgctgagcaggtacat 328 |||||| |||||||| | |||| |||||| ||||||||| | |||||||||||| || Sbjct: 108580 gtacccgaacgtcgacatgccgctggtgagcagcacgtcggcgaagctgagcaggtagat 108639 Query: 329 ctcg 332 |||| Sbjct: 108640 ctcg 108643
>dbj|AK103086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I03, full insert sequence Length = 1873 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 248 cccgccgagcccctgcgcgacgtacccaaacgtcga 283 |||||||||||||||||| |||||||| |||||||| Sbjct: 1510 cccgccgagcccctgcgccacgtacccgaacgtcga 1475 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 370 tctgctgcccctcgtggctcggctggt 396 |||||||| |||||||||||||||||| Sbjct: 1388 tctgctgctcctcgtggctcggctggt 1362
>dbj|AK071124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080C23, full insert sequence Length = 1805 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 379 cctcgtggctcggctggtgcacgc 402 |||||||||||||||||||||||| Sbjct: 1325 cctcgtggctcggctggtgcacgc 1302
>dbj|AK073279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024H19, full insert sequence Length = 1774 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 ctcgtggctcggctggtgcacgc 402 ||||||||||||||||||||||| Sbjct: 1358 ctcgtggctcggctggtgcacgc 1336
>ref|XM_467940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1388 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggtgcac 400 ||||| || ||||||||||||||||||||| Sbjct: 1031 ctgctcccgctcgtggctcggctggtgcac 1002
>ref|XM_467938.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2146 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggt 396 ||||||| |||||||||||||||||| Sbjct: 1585 ctgctgctcctcgtggctcggctggt 1560
>ref|XM_462666.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1743 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 431 gtccctgatcctctcgtagtac 452 |||||||||||||||||||||| Sbjct: 1347 gtccctgatcctctcgtagtac 1326
>emb|AL592464.24| Human DNA sequence from clone RP11-740P5 on chromosome 1, complete sequence Length = 120028 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 391 gctggtgcacgccgccggcgaccctg 416 ||||||||||||||| |||||||||| Sbjct: 20029 gctggtgcacgccgcaggcgaccctg 20054
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 gtccctgatcctctcgtagtac 452 |||||||||||||||||||||| Sbjct: 22356535 gtccctgatcctctcgtagtac 22356556
>gb|AC020709.4|AC020709 Homo sapiens clone RP11-425F18, complete sequence Length = 184104 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 391 gctggtgcacgccgccggcgaccctg 416 ||||||||||||||| |||||||||| Sbjct: 10234 gctggtgcacgccgcaggcgaccctg 10259
>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0486G03 Length = 146713 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggtgcac 400 ||||| || ||||||||||||||||||||| Sbjct: 133914 ctgctcccgctcgtggctcggctggtgcac 133885 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggt 396 ||||||| |||||||||||||||||| Sbjct: 122406 ctgctgctcctcgtggctcggctggt 122381
>dbj|AK110929.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D11, full insert sequence Length = 2078 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 431 gtccctgatcctctcgtagtac 452 |||||||||||||||||||||| Sbjct: 1534 gtccctgatcctctcgtagtac 1513
>dbj|AK108759.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G04, full insert sequence Length = 1388 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggtgcac 400 ||||| || ||||||||||||||||||||| Sbjct: 1031 ctgctcccgctcgtggctcggctggtgcac 1002
>dbj|AK072854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138A15, full insert sequence Length = 2145 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 371 ctgctgcccctcgtggctcggctggt 396 ||||||| |||||||||||||||||| Sbjct: 1584 ctgctgctcctcgtggctcggctggt 1559
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 gtccctgatcctctcgtagtac 452 |||||||||||||||||||||| Sbjct: 107439 gtccctgatcctctcgtagtac 107460
>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence Length = 97697 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 460 tcagagaagtgaccaggacagc 481 |||||||||||||||||||||| Sbjct: 90600 tcagagaagtgaccaggacagc 90579
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 cggcggttccggcaccggcac 193 ||||||||||||||||||||| Sbjct: 5512886 cggcggttccggcaccggcac 5512906
>emb|BX817791.1|CNS0AB09 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL41ZG06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 679 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 gaaaacgacgacgtgctctcc 524 ||||||||||||||||||||| Sbjct: 420 gaaaacgacgacgtgctctcc 400
>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0035F08 Length = 167446 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 cggcggttccggcaccggcac 193 ||||||||||||||||||||| Sbjct: 39114 cggcggttccggcaccggcac 39134
>ref|XM_475072.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1314 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gtgcacgccgccggcgaccc 414 |||||||||||||||||||| Sbjct: 34 gtgcacgccgccggcgaccc 53
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gtgcacgccgccggcgaccc 414 |||||||||||||||||||| Sbjct: 35633 gtgcacgccgccggcgaccc 35652
>ref|XM_586520.2| PREDICTED: Bos taurus similar to Glutamate receptor interacting protein 2 (GRIP2 protein) (LOC509537), mRNA Length = 5925 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cagcaccttccccacatcca 99 |||||||||||||||||||| Sbjct: 2290 cagcaccttccccacatcca 2271
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 accccgccgagcccctgcgcgacg 269 ||||||||||| |||||||||||| Sbjct: 63133 accccgccgaggccctgcgcgacg 63156 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 accccgccgagcccctgcgcgacg 269 ||||||||||| |||||||||||| Sbjct: 63010 accccgccgaggccctgcgcgacg 63033
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 gctggtgcacgccgccggcg 410 |||||||||||||||||||| Sbjct: 1715552 gctggtgcacgccgccggcg 1715533
>gb|AC117638.13| Mus musculus, clone RP23-225L9, complete sequence Length = 184477 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 aagtgaccaggacagcctgg 485 |||||||||||||||||||| Sbjct: 178750 aagtgaccaggacagcctgg 178769
>dbj|AB236754.1| Trifolium pratense RNA for putative transcription factor EREBP, complete cds, clone: C1500 Length = 1523 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ctcgtggctcggctggtgca 399 |||||||||||||||||||| Sbjct: 409 ctcgtggctcggctggtgca 428
>ref|XM_936778.1| PREDICTED: Homo sapiens hypothetical protein LOC647718 (LOC647718), mRNA Length = 3093 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 gctggtgcacgccgccggcgaccc 414 ||||||||||||||| |||||||| Sbjct: 2500 gctggtgcacgccgcaggcgaccc 2477
>ref|XM_372755.3| PREDICTED: Homo sapiens hypothetical LOC390988 (LOC390988), mRNA Length = 2244 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 gctggtgcacgccgccggcgaccc 414 ||||||||||||||| |||||||| Sbjct: 1651 gctggtgcacgccgcaggcgaccc 1628
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 gctggtgcacgccgccggcg 410 |||||||||||||||||||| Sbjct: 4342729 gctggtgcacgccgccggcg 4342710 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 gctggtgcacgccgccggcg 410 |||||||||||||||||||| Sbjct: 3265515 gctggtgcacgccgccggcg 3265534
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gtgcacgccgccggcgaccc 414 |||||||||||||||||||| Sbjct: 260113 gtgcacgccgccggcgaccc 260132
>dbj|AK069395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011N07, full insert sequence Length = 1670 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gtgcacgccgccggcgaccc 414 |||||||||||||||||||| Sbjct: 68 gtgcacgccgccggcgaccc 87
>gb|AC113486.11| Mus musculus chromosome 14, clone RP23-354M3, complete sequence Length = 212011 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 aagtgaccaggacagcctgg 485 |||||||||||||||||||| Sbjct: 42113 aagtgaccaggacagcctgg 42132
>ref|NM_205015.1| Gallus gallus T-cell leukemia homeobox 1 (TLX1), mRNA Length = 894 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 ggctggtgcacgccgccggc 409 |||||||||||||||||||| Sbjct: 365 ggctggtgcacgccgccggc 346
>gb|AF071874.1|AF071874 Gallus gallus homeodomain protein (Tlx-1) mRNA, complete cds Length = 894 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 ggctggtgcacgccgccggc 409 |||||||||||||||||||| Sbjct: 365 ggctggtgcacgccgccggc 346
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gtgcacgccgccggcgaccc 414 |||||||||||||||||||| Sbjct: 142297 gtgcacgccgccggcgaccc 142316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,346,252 Number of Sequences: 3902068 Number of extensions: 3346252 Number of successful extensions: 67184 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66560 Number of HSP's gapped (non-prelim): 615 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
