| Clone Name | rbags39k12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2117 Score = 599 bits (302), Expect = e-168 Identities = 439/485 (90%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 2004 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1945 Query: 308 aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367 | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| Sbjct: 1944 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1885 Query: 368 cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427 |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||| Sbjct: 1884 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1825 Query: 428 tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487 | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| ||||||| Sbjct: 1824 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1765 Query: 488 tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547 | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| | Sbjct: 1764 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1705 Query: 548 cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 1704 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1645 Query: 608 agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667 ||||||| |||||||||| ||||||||||||||| |||||||||| |||||| ||| | Sbjct: 1644 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1585 Query: 668 tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1584 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1525 Query: 728 gattt 732 ||||| Sbjct: 1524 gattt 1520
>ref|XM_506350.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1457_D07.117 mRNA Length = 3192 Score = 599 bits (302), Expect = e-168 Identities = 439/485 (90%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 2100 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 2041 Query: 308 aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367 | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| Sbjct: 2040 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1981 Query: 368 cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427 |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||| Sbjct: 1980 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1921 Query: 428 tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487 | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| ||||||| Sbjct: 1920 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1861 Query: 488 tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547 | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| | Sbjct: 1860 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1801 Query: 548 cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 1800 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1741 Query: 608 agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667 ||||||| |||||||||| ||||||||||||||| |||||||||| |||||| ||| | Sbjct: 1740 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1681 Query: 668 tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1680 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1621 Query: 728 gattt 732 ||||| Sbjct: 1620 gattt 1616
>dbj|AK065801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036E18, full insert sequence Length = 3192 Score = 599 bits (302), Expect = e-168 Identities = 439/485 (90%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 2100 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 2041 Query: 308 aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367 | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| Sbjct: 2040 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1981 Query: 368 cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427 |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||| Sbjct: 1980 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1921 Query: 428 tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487 | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| ||||||| Sbjct: 1920 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1861 Query: 488 tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547 | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| | Sbjct: 1860 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1801 Query: 548 cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 1800 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1741 Query: 608 agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667 ||||||| |||||||||| ||||||||||||||| |||||||||| |||||| ||| | Sbjct: 1740 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1681 Query: 668 tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1680 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1621 Query: 728 gattt 732 ||||| Sbjct: 1620 gattt 1616
>dbj|AK064866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I18, full insert sequence Length = 2117 Score = 599 bits (302), Expect = e-168 Identities = 439/485 (90%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 2004 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1945 Query: 308 aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367 | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| Sbjct: 1944 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1885 Query: 368 cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427 |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||| Sbjct: 1884 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1825 Query: 428 tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487 | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| ||||||| Sbjct: 1824 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1765 Query: 488 tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547 | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| | Sbjct: 1764 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1705 Query: 548 cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 1704 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1645 Query: 608 agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667 ||||||| |||||||||| ||||||||||||||| |||||||||| |||||| ||| | Sbjct: 1644 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1585 Query: 668 tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1584 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1525 Query: 728 gattt 732 ||||| Sbjct: 1524 gattt 1520
>dbj|AK061706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E11, full insert sequence Length = 1760 Score = 599 bits (302), Expect = e-168 Identities = 439/485 (90%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 1401 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1342 Query: 308 aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367 | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| Sbjct: 1341 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1282 Query: 368 cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427 |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||| Sbjct: 1281 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1222 Query: 428 tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487 | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| ||||||| Sbjct: 1221 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1162 Query: 488 tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547 | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| | Sbjct: 1161 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1102 Query: 548 cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 1101 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1042 Query: 608 agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667 ||||||| |||||||||| ||||||||||||||| |||||||||| |||||| ||| | Sbjct: 1041 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 982 Query: 668 tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 981 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 922 Query: 728 gattt 732 ||||| Sbjct: 921 gattt 917
>gb|AY107471.1| Zea mays PCO115183 mRNA sequence Length = 1366 Score = 494 bits (249), Expect = e-136 Identities = 425/484 (87%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||| |||||||| | || ||||||||| || ||| |||||||||| ||||||||| Sbjct: 1009 tctagtccttcttgtatattattgttggatagacaggactccacatgttcgtcttgacat 950 Query: 308 aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367 | ||| ||||||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct: 949 attcattagtttcttcctcactgagtcgtgcaagctcacgtgcatccatgtcacggtatc 890 Query: 368 cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427 |||||||||| |||||||| || || |||||||| |||||||| |||||||||||||||| Sbjct: 889 cctcagctagatcctctgctactgcctccctcacaactgctgctgccacctccttagtga 830 Query: 428 tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487 |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 829 tgtcacgtattctggaaattggaggataaattatcccttcgagaacctcctcctctttca 770 Query: 488 tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547 |||| |||||||| || || ||||| ||||| |||||||||||||||| || ||| |||| Sbjct: 769 tgtatgaagccaaacgttcagctgcagcctgcagcattccatcagagataacccgagcac 710 Query: 548 cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607 |||| | ||||||||||| ||||||||||||||||| |||||||| ||||||||||| | Sbjct: 709 cagacagaagggttccaagccctattccaggaaagaggtacatgttgttcccttgattgg 650 Query: 608 agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667 | ||||| ||||| |||||||||||||||||||| | ||||||||| |||| | ||| | Sbjct: 649 aatggccaatcttcccatcaccaagatccacatcatgaaatgggctcccactagcaaaga 590 Query: 668 tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727 ||||||||||||| | |||||| || ||||| |||||||||| |||||||||||||||| Sbjct: 589 tgaccttttcacctagaattgaaaatgcttccccaggtgtacactcagcattcttagttg 530 Query: 728 gatt 731 |||| Sbjct: 529 gatt 526
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 331 agtcttgcaagctcacgtgcatccatgtcacggtatccctcagctaggtcctctgcaaca 390 ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 18541284 agtcttgcaagttcacgtgcatccatgtcacgatatccctcagctagatcctctgcaaca 18541225 Query: 391 gcttccctcaccactgctgccgccacctccttagtgatgtcacgtattct 440 |||||| |||| |||||||| ||||||||||| ||||| ||||||||||| Sbjct: 18541224 gcttccttcacaactgctgctgccacctccttggtgatatcacgtattct 18541175 Score = 109 bits (55), Expect = 1e-20 Identities = 81/90 (90%) Strand = Plus / Minus Query: 627 accaagatccacatcgtcaaatgggcttncactggaaaatatgaccttttcaccaataat 686 ||||||||||||||| |||||||||| |||||| ||| |||| ||||||||||| ||| Sbjct: 18540484 accaagatccacatcactaaatgggcttccactggcaaagatgatcttttcaccaagaat 18540425 Query: 687 tgagaaggcttcttcaggtgtacattcagc 716 ||| |||||||||||||||||||||||||| Sbjct: 18540424 tgaaaaggcttcttcaggtgtacattcagc 18540395 Score = 107 bits (54), Expect = 5e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 18541452 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 18541393 Query: 308 aatcaactgtttcttcct 325 | |||||||||||||||| Sbjct: 18541392 actcaactgtttcttcct 18541375 Score = 87.7 bits (44), Expect = 5e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 574 ccaggaaagagatacatgttattcccttgattagagtggccgatctttccat 625 |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 18540764 ccaggaaagagatacatgttattcccttgatttgagtggccaatctttccat 18540713 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 439 ctggaggttggagggtaaattatcccttggagaacctcctcctctttcatgtacgaagcc 498 |||||| |||||||||| | |||||||| |||||| ||||| |||||||| ||||||||| Sbjct: 18541101 ctggagattggagggtatactatcccttcgagaacttcctcttctttcatatacgaagcc 18541042 Query: 499 aagc 502 |||| Sbjct: 18541041 aagc 18541038 Score = 61.9 bits (31), Expect = 3e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 508 gctgccgcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagt 567 ||||| |||||||||||||| || |||| || |||||| ||||||| ||||||||||| Sbjct: 18540934 gctgcagcctgaagcattccgtctgagataacccgtgctccagatagaagggttccaagc 18540875 Query: 568 cctattc 574 ||||||| Sbjct: 18540874 cctattc 18540868
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 331 agtcttgcaagctcacgtgcatccatgtcacggtatccctcagctaggtcctctgcaaca 390 ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 70040 agtcttgcaagttcacgtgcatccatgtcacgatatccctcagctagatcctctgcaaca 69981 Query: 391 gcttccctcaccactgctgccgccacctccttagtgatgtcacgtattct 440 |||||| |||| |||||||| ||||||||||| ||||| ||||||||||| Sbjct: 69980 gcttccttcacaactgctgctgccacctccttggtgatatcacgtattct 69931 Score = 109 bits (55), Expect = 1e-20 Identities = 81/90 (90%) Strand = Plus / Minus Query: 627 accaagatccacatcgtcaaatgggcttncactggaaaatatgaccttttcaccaataat 686 ||||||||||||||| |||||||||| |||||| ||| |||| ||||||||||| ||| Sbjct: 69240 accaagatccacatcactaaatgggcttccactggcaaagatgatcttttcaccaagaat 69181 Query: 687 tgagaaggcttcttcaggtgtacattcagc 716 ||| |||||||||||||||||||||||||| Sbjct: 69180 tgaaaaggcttcttcaggtgtacattcagc 69151 Score = 107 bits (54), Expect = 5e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 248 tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307 ||||||||||||||||||||| |||||||||||||||| |||||||||| | || ||||| Sbjct: 70208 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 70149 Query: 308 aatcaactgtttcttcct 325 | |||||||||||||||| Sbjct: 70148 actcaactgtttcttcct 70131 Score = 87.7 bits (44), Expect = 5e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 574 ccaggaaagagatacatgttattcccttgattagagtggccgatctttccat 625 |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 69520 ccaggaaagagatacatgttattcccttgatttgagtggccaatctttccat 69469 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 439 ctggaggttggagggtaaattatcccttggagaacctcctcctctttcatgtacgaagcc 498 |||||| |||||||||| | |||||||| |||||| ||||| |||||||| ||||||||| Sbjct: 69857 ctggagattggagggtatactatcccttcgagaacttcctcttctttcatatacgaagcc 69798 Query: 499 aagc 502 |||| Sbjct: 69797 aagc 69794 Score = 61.9 bits (31), Expect = 3e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 508 gctgccgcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagt 567 ||||| |||||||||||||| || |||| || |||||| ||||||| ||||||||||| Sbjct: 69690 gctgcagcctgaagcattccgtctgagataacccgtgctccagatagaagggttccaagc 69631 Query: 568 cctattc 574 ||||||| Sbjct: 69630 cctattc 69624
>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent malic enzyme (malate dehydrogenase) Length = 2251 Score = 63.9 bits (32), Expect = 7e-07 Identities = 107/132 (81%) Strand = Plus / Minus Query: 352 tccatgtcacggtatccctcagctaggtcctctgcaacagcttccctcaccactgctgcc 411 ||||| ||||||||||| ||||| || |||||| | | |||||| ||||||| ||||| Sbjct: 1806 tccatttcacggtatccttcagccagatcctcttctatagcttctttcaccacagctgca 1747 Query: 412 gccacctccttagtgatgtcacgtattctggaggttggagggtaaattatcccttggaga 471 ||||||||||| || || || ||||| ||||| | | |||||| || ||||| | ||| Sbjct: 1746 gccacctcctttgttatatcgcgtatcctggatatcgaagggtatataatccccttgagt 1687 Query: 472 acctcctcctct 483 |||||||||||| Sbjct: 1686 acctcctcctct 1675 Score = 50.1 bits (25), Expect = 0.010 Identities = 75/92 (81%) Strand = Plus / Minus Query: 628 ccaagatccacatcgtcaaatgggcttncactggaaaatatgaccttttcaccaataatt 687 |||||||||||||| | ||||||||| |||| | |||||| | || ||||| | ||| Sbjct: 1530 ccaagatccacatccttgaatgggcttccacttgcaaatataatgttctcaccgagaata 1471 Query: 688 gagaaggcttcttcaggtgtacattcagcatt 719 || || ||||| |||||||| ||||||||||| Sbjct: 1470 gaaaatgcttcctcaggtgtgcattcagcatt 1439 Score = 42.1 bits (21), Expect = 2.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 253 tctttcttgtacactactgttggataaactggattccacatgttgttct 301 ||||||||||| || | |||||||||| | ||| ||||||| ||||||| Sbjct: 1905 tctttcttgtaaaccagtgttggataatcaggactccacatattgttct 1857
>ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor AT2G13560 mRNA, complete cds Length = 2113 Score = 56.0 bits (28), Expect = 2e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 514 gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 573 ||||||||||| || || |||||||| | ||||||||||| || || |||||||| || Sbjct: 1732 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1673 Query: 574 ccaggaaagagatacatgtt 593 || ||||| ||||||||||| Sbjct: 1672 cctggaaatagatacatgtt 1653
>gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate oxidoreductase (malic enzyme) (At2g13560) mRNA, complete cds Length = 1902 Score = 56.0 bits (28), Expect = 2e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 514 gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 573 ||||||||||| || || |||||||| | ||||||||||| || || |||||||| || Sbjct: 1607 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1548 Query: 574 ccaggaaagagatacatgtt 593 || ||||| ||||||||||| Sbjct: 1547 cctggaaatagatacatgtt 1528
>gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreductase (malic enzyme) (At2g13560) mRNA, complete cds Length = 2181 Score = 56.0 bits (28), Expect = 2e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 514 gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 573 ||||||||||| || || |||||||| | ||||||||||| || || |||||||| || Sbjct: 1733 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1674 Query: 574 ccaggaaagagatacatgtt 593 || ||||| ||||||||||| Sbjct: 1673 cctggaaatagatacatgtt 1654
>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic enzyme subunit alpha precursor mRNA, complete cds Length = 2283 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 349 gcatccatgtcacggtatccctcagctaggtcctctgcaacagcttccctcaccactgct 408 |||||||||||||| || || || || ||||||||| | ||||||||| | | || ||| Sbjct: 1826 gcatccatgtcacgatagccttctgcaaggtcctcttctacagcttccttaattacggct 1767 Query: 409 gccgccacctccttagtgatgtcacgtattct 440 || || ||||| || ||||||||||||||||| Sbjct: 1766 gctgctacctctttggtgatgtcacgtattct 1735
>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the NAD+-dependent malic enzyme Length = 2188 Score = 48.1 bits (24), Expect = 0.041 Identities = 30/32 (93%) Strand = Plus / Minus Query: 574 ccaggaaagagatacatgttattcccttgatt 605 ||||| |||||||||||||||||| ||||||| Sbjct: 1551 ccagggaagagatacatgttattcgcttgatt 1520
>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128301 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 676 tcaccaataattgagaaggctt 697 |||||||||||||||||||||| Sbjct: 94781 tcaccaataattgagaaggctt 94760
>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence Length = 139891 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 183 gaaagaatagcctaaggaaaat 204 |||||||||||||||||||||| Sbjct: 6350 gaaagaatagcctaaggaaaat 6371
>gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172188 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 183 gaaagaatagcctaaggaaaat 204 |||||||||||||||||||||| Sbjct: 155706 gaaagaatagcctaaggaaaat 155727
>gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, complete sequence Length = 190817 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 208 gcatgatgaatgaacatgtatttta 232 |||||||||| |||||||||||||| Sbjct: 43 gcatgatgaaagaacatgtatttta 19
>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence Length = 212083 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 gcatgatgaatgaacatgtatttta 232 |||||||||| |||||||||||||| Sbjct: 60572 gcatgatgaaagaacatgtatttta 60596
>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence Length = 191037 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 317 tttcttcctcgcttagtcttgcaag 341 ||||||||| ||||||||||||||| Sbjct: 156515 tttcttcctggcttagtcttgcaag 156539
>gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, complete sequence Length = 168055 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 317 tttcttcctcgcttagtcttgcaag 341 ||||||||| ||||||||||||||| Sbjct: 76456 tttcttcctggcttagtcttgcaag 76480
>gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177260 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tttcttcctcgcttagtcttg 337 ||||||||||||||||||||| Sbjct: 91381 tttcttcctcgcttagtcttg 91401 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,341,301 Number of Sequences: 3902068 Number of extensions: 6341301 Number of successful extensions: 112239 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112161 Number of HSP's gapped (non-prelim): 78 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)