ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_478211.1| Oryza sativa (japonica cultivar-group), mRNA 599 e-168
2ref|XM_506350.1| PREDICTED Oryza sativa (japonica cultivar-group... 599 e-168
3dbj|AK065801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 599 e-168
4dbj|AK064866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 599 e-168
5dbj|AK061706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 599 e-168
6gb|AY107471.1| Zea mays PCO115183 mRNA sequence 494 e-136
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
8dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
9emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mit... 64 7e-07
10ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreducta... 56 2e-04
11gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate... 56 2e-04
12gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreducta... 56 2e-04
13gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic ... 56 2e-04
14emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59k... 48 0.041
15gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 44 0.64
16gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252... 44 0.64
17gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cance... 44 0.64
18gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, co... 42 2.5
19gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, com... 42 2.5
20gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, com... 42 2.5
21gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, co... 42 2.5
22gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Can... 42 2.5

>ref|XM_478211.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2117

 Score =  599 bits (302), Expect = e-168
 Identities = 439/485 (90%)
 Strand = Plus / Minus

                                                                        
Query: 248  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2004 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1945

                                                                        
Query: 308  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1944 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1885

                                                                        
Query: 368  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1884 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1825

                                                                        
Query: 428  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1824 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1765

                                                                        
Query: 488  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1764 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1705

                                                                        
Query: 548  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1704 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1645

                                                                        
Query: 608  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667
            ||||||| |||||||||| |||||||||||||||   |||||||||| |||||| ||| |
Sbjct: 1644 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1585

                                                                        
Query: 668  tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727
            ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1584 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1525

                 
Query: 728  gattt 732
            |||||
Sbjct: 1524 gattt 1520



to top

>ref|XM_506350.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1457_D07.117 mRNA
          Length = 3192

 Score =  599 bits (302), Expect = e-168
 Identities = 439/485 (90%)
 Strand = Plus / Minus

                                                                        
Query: 248  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2100 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 2041

                                                                        
Query: 308  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 2040 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1981

                                                                        
Query: 368  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1980 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1921

                                                                        
Query: 428  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1920 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1861

                                                                        
Query: 488  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1860 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1801

                                                                        
Query: 548  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1800 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1741

                                                                        
Query: 608  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667
            ||||||| |||||||||| |||||||||||||||   |||||||||| |||||| ||| |
Sbjct: 1740 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1681

                                                                        
Query: 668  tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727
            ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1680 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1621

                 
Query: 728  gattt 732
            |||||
Sbjct: 1620 gattt 1616



to top

>dbj|AK065801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036E18, full
            insert sequence
          Length = 3192

 Score =  599 bits (302), Expect = e-168
 Identities = 439/485 (90%)
 Strand = Plus / Minus

                                                                        
Query: 248  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2100 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 2041

                                                                        
Query: 308  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 2040 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1981

                                                                        
Query: 368  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1980 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1921

                                                                        
Query: 428  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1920 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1861

                                                                        
Query: 488  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1860 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1801

                                                                        
Query: 548  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1800 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1741

                                                                        
Query: 608  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667
            ||||||| |||||||||| |||||||||||||||   |||||||||| |||||| ||| |
Sbjct: 1740 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1681

                                                                        
Query: 668  tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727
            ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1680 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1621

                 
Query: 728  gattt 732
            |||||
Sbjct: 1620 gattt 1616



to top

>dbj|AK064866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I18, full
            insert sequence
          Length = 2117

 Score =  599 bits (302), Expect = e-168
 Identities = 439/485 (90%)
 Strand = Plus / Minus

                                                                        
Query: 248  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2004 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1945

                                                                        
Query: 308  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1944 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1885

                                                                        
Query: 368  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1884 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1825

                                                                        
Query: 428  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1824 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1765

                                                                        
Query: 488  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1764 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1705

                                                                        
Query: 548  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1704 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1645

                                                                        
Query: 608  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667
            ||||||| |||||||||| |||||||||||||||   |||||||||| |||||| ||| |
Sbjct: 1644 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 1585

                                                                        
Query: 668  tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727
            ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1584 tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 1525

                 
Query: 728  gattt 732
            |||||
Sbjct: 1524 gattt 1520



to top

>dbj|AK061706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E11, full
            insert sequence
          Length = 1760

 Score =  599 bits (302), Expect = e-168
 Identities = 439/485 (90%)
 Strand = Plus / Minus

                                                                        
Query: 248  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 1401 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1342

                                                                        
Query: 308  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1341 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1282

                                                                        
Query: 368  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1281 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1222

                                                                        
Query: 428  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1221 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1162

                                                                        
Query: 488  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1161 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1102

                                                                        
Query: 548  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1101 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1042

                                                                        
Query: 608  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667
            ||||||| |||||||||| |||||||||||||||   |||||||||| |||||| ||| |
Sbjct: 1041 agtggccaatctttccattaccaagatccacatcactaaatgggcttccactggcaaaga 982

                                                                        
Query: 668  tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727
            ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 981  tgatcttttcaccaagaattgaaaaggcttcttcaggtgtacattcagcattcttagttg 922

                 
Query: 728  gattt 732
            |||||
Sbjct: 921  gattt 917



to top

>gb|AY107471.1| Zea mays PCO115183 mRNA sequence
          Length = 1366

 Score =  494 bits (249), Expect = e-136
 Identities = 425/484 (87%)
 Strand = Plus / Minus

                                                                        
Query: 248  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
            ||||||| |||||||| | || ||||||||| || ||| ||||||||||  |||||||||
Sbjct: 1009 tctagtccttcttgtatattattgttggatagacaggactccacatgttcgtcttgacat 950

                                                                        
Query: 308  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 367
            | |||   ||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct: 949  attcattagtttcttcctcactgagtcgtgcaagctcacgtgcatccatgtcacggtatc 890

                                                                        
Query: 368  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 427
            |||||||||| |||||||| || || |||||||| |||||||| ||||||||||||||||
Sbjct: 889  cctcagctagatcctctgctactgcctccctcacaactgctgctgccacctccttagtga 830

                                                                        
Query: 428  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 487
            ||||||||||||||||  ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 829  tgtcacgtattctggaaattggaggataaattatcccttcgagaacctcctcctctttca 770

                                                                        
Query: 488  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 547
            |||| |||||||| || || ||||| ||||| |||||||||||||||| || ||| ||||
Sbjct: 769  tgtatgaagccaaacgttcagctgcagcctgcagcattccatcagagataacccgagcac 710

                                                                        
Query: 548  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 607
            |||| |  ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 709  cagacagaagggttccaagccctattccaggaaagaggtacatgttgttcccttgattgg 650

                                                                        
Query: 608  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttncactggaaaata 667
            | ||||| ||||| |||||||||||||||||||| | |||||||||  |||| | ||| |
Sbjct: 649  aatggccaatcttcccatcaccaagatccacatcatgaaatgggctcccactagcaaaga 590

                                                                        
Query: 668  tgaccttttcaccaataattgagaaggcttcttcaggtgtacattcagcattcttagttg 727
            ||||||||||||| | |||||| || |||||  |||||||||| ||||||||||||||||
Sbjct: 589  tgaccttttcacctagaattgaaaatgcttccccaggtgtacactcagcattcttagttg 530

                
Query: 728  gatt 731
            ||||
Sbjct: 529  gatt 526



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                            
Query: 331      agtcttgcaagctcacgtgcatccatgtcacggtatccctcagctaggtcctctgcaaca 390
                ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 18541284 agtcttgcaagttcacgtgcatccatgtcacgatatccctcagctagatcctctgcaaca 18541225

                                                                  
Query: 391      gcttccctcaccactgctgccgccacctccttagtgatgtcacgtattct 440
                |||||| |||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 18541224 gcttccttcacaactgctgctgccacctccttggtgatatcacgtattct 18541175



 Score =  109 bits (55), Expect = 1e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                            
Query: 627      accaagatccacatcgtcaaatgggcttncactggaaaatatgaccttttcaccaataat 686
                |||||||||||||||   |||||||||| |||||| ||| |||| ||||||||||| |||
Sbjct: 18540484 accaagatccacatcactaaatgggcttccactggcaaagatgatcttttcaccaagaat 18540425

                                              
Query: 687      tgagaaggcttcttcaggtgtacattcagc 716
                ||| ||||||||||||||||||||||||||
Sbjct: 18540424 tgaaaaggcttcttcaggtgtacattcagc 18540395



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 248      tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
                ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 18541452 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 18541393

                                  
Query: 308      aatcaactgtttcttcct 325
                | ||||||||||||||||
Sbjct: 18541392 actcaactgtttcttcct 18541375



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                    
Query: 574      ccaggaaagagatacatgttattcccttgattagagtggccgatctttccat 625
                |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 18540764 ccaggaaagagatacatgttattcccttgatttgagtggccaatctttccat 18540713



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 439      ctggaggttggagggtaaattatcccttggagaacctcctcctctttcatgtacgaagcc 498
                |||||| |||||||||| | |||||||| |||||| ||||| |||||||| |||||||||
Sbjct: 18541101 ctggagattggagggtatactatcccttcgagaacttcctcttctttcatatacgaagcc 18541042

                    
Query: 499      aagc 502
                ||||
Sbjct: 18541041 aagc 18541038



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 508      gctgccgcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagt 567
                ||||| |||||||||||||| || |||| || |||||| |||||||  ||||||||||| 
Sbjct: 18540934 gctgcagcctgaagcattccgtctgagataacccgtgctccagatagaagggttccaagc 18540875

                       
Query: 568      cctattc 574
                |||||||
Sbjct: 18540874 cctattc 18540868



to top

>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                         
Query: 331   agtcttgcaagctcacgtgcatccatgtcacggtatccctcagctaggtcctctgcaaca 390
             ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 70040 agtcttgcaagttcacgtgcatccatgtcacgatatccctcagctagatcctctgcaaca 69981

                                                               
Query: 391   gcttccctcaccactgctgccgccacctccttagtgatgtcacgtattct 440
             |||||| |||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 69980 gcttccttcacaactgctgctgccacctccttggtgatatcacgtattct 69931



 Score =  109 bits (55), Expect = 1e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                         
Query: 627   accaagatccacatcgtcaaatgggcttncactggaaaatatgaccttttcaccaataat 686
             |||||||||||||||   |||||||||| |||||| ||| |||| ||||||||||| |||
Sbjct: 69240 accaagatccacatcactaaatgggcttccactggcaaagatgatcttttcaccaagaat 69181

                                           
Query: 687   tgagaaggcttcttcaggtgtacattcagc 716
             ||| ||||||||||||||||||||||||||
Sbjct: 69180 tgaaaaggcttcttcaggtgtacattcagc 69151



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 248   tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 307
             ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 70208 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 70149

                               
Query: 308   aatcaactgtttcttcct 325
             | ||||||||||||||||
Sbjct: 70148 actcaactgtttcttcct 70131



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                 
Query: 574   ccaggaaagagatacatgttattcccttgattagagtggccgatctttccat 625
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 69520 ccaggaaagagatacatgttattcccttgatttgagtggccaatctttccat 69469



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 439   ctggaggttggagggtaaattatcccttggagaacctcctcctctttcatgtacgaagcc 498
             |||||| |||||||||| | |||||||| |||||| ||||| |||||||| |||||||||
Sbjct: 69857 ctggagattggagggtatactatcccttcgagaacttcctcttctttcatatacgaagcc 69798

                 
Query: 499   aagc 502
             ||||
Sbjct: 69797 aagc 69794



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 508   gctgccgcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagt 567
             ||||| |||||||||||||| || |||| || |||||| |||||||  ||||||||||| 
Sbjct: 69690 gctgcagcctgaagcattccgtctgagataacccgtgctccagatagaagggttccaagc 69631

                    
Query: 568   cctattc 574
             |||||||
Sbjct: 69630 cctattc 69624



to top

>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent
            malic enzyme (malate dehydrogenase)
          Length = 2251

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 107/132 (81%)
 Strand = Plus / Minus

                                                                        
Query: 352  tccatgtcacggtatccctcagctaggtcctctgcaacagcttccctcaccactgctgcc 411
            ||||| ||||||||||| ||||| || |||||| | | ||||||  ||||||| ||||| 
Sbjct: 1806 tccatttcacggtatccttcagccagatcctcttctatagcttctttcaccacagctgca 1747

                                                                        
Query: 412  gccacctccttagtgatgtcacgtattctggaggttggagggtaaattatcccttggaga 471
            ||||||||||| || || || ||||| |||||  | | |||||| || ||||| | ||| 
Sbjct: 1746 gccacctcctttgttatatcgcgtatcctggatatcgaagggtatataatccccttgagt 1687

                        
Query: 472  acctcctcctct 483
            ||||||||||||
Sbjct: 1686 acctcctcctct 1675



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 628  ccaagatccacatcgtcaaatgggcttncactggaaaatatgaccttttcaccaataatt 687
            |||||||||||||| |  ||||||||| |||| | |||||| |  || ||||| | ||| 
Sbjct: 1530 ccaagatccacatccttgaatgggcttccacttgcaaatataatgttctcaccgagaata 1471

                                            
Query: 688  gagaaggcttcttcaggtgtacattcagcatt 719
            || || ||||| |||||||| |||||||||||
Sbjct: 1470 gaaaatgcttcctcaggtgtgcattcagcatt 1439



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 253  tctttcttgtacactactgttggataaactggattccacatgttgttct 301
            ||||||||||| || | |||||||||| | ||| ||||||| |||||||
Sbjct: 1905 tctttcttgtaaaccagtgttggataatcaggactccacatattgttct 1857



to top

>ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or
            NADPH, NAD or NADP as acceptor AT2G13560 mRNA, complete
            cds
          Length = 2113

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 514  gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 573
            ||||||||||| || || ||||||||  | ||||||||||| || || |||||||| || 
Sbjct: 1732 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1673

                                
Query: 574  ccaggaaagagatacatgtt 593
            || ||||| |||||||||||
Sbjct: 1672 cctggaaatagatacatgtt 1653



to top

>gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate oxidoreductase
            (malic enzyme) (At2g13560) mRNA, complete cds
          Length = 1902

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 514  gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 573
            ||||||||||| || || ||||||||  | ||||||||||| || || |||||||| || 
Sbjct: 1607 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1548

                                
Query: 574  ccaggaaagagatacatgtt 593
            || ||||| |||||||||||
Sbjct: 1547 cctggaaatagatacatgtt 1528



to top

>gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreductase (malic enzyme)
            (At2g13560) mRNA, complete cds
          Length = 2181

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 514  gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 573
            ||||||||||| || || ||||||||  | ||||||||||| || || |||||||| || 
Sbjct: 1733 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1674

                                
Query: 574  ccaggaaagagatacatgtt 593
            || ||||| |||||||||||
Sbjct: 1673 cctggaaatagatacatgtt 1654



to top

>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic
            enzyme subunit alpha precursor mRNA, complete cds
          Length = 2283

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 349  gcatccatgtcacggtatccctcagctaggtcctctgcaacagcttccctcaccactgct 408
            |||||||||||||| || || || || ||||||||| | ||||||||| | |  || |||
Sbjct: 1826 gcatccatgtcacgatagccttctgcaaggtcctcttctacagcttccttaattacggct 1767

                                            
Query: 409  gccgccacctccttagtgatgtcacgtattct 440
            || || ||||| || |||||||||||||||||
Sbjct: 1766 gctgctacctctttggtgatgtcacgtattct 1735



to top

>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the
            NAD+-dependent malic enzyme
          Length = 2188

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 574  ccaggaaagagatacatgttattcccttgatt 605
            ||||| |||||||||||||||||| |||||||
Sbjct: 1551 ccagggaagagatacatgttattcgcttgatt 1520



to top

>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128301

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 676   tcaccaataattgagaaggctt 697
             ||||||||||||||||||||||
Sbjct: 94781 tcaccaataattgagaaggctt 94760



to top

>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete
            sequence
          Length = 139891

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 183  gaaagaatagcctaaggaaaat 204
            ||||||||||||||||||||||
Sbjct: 6350 gaaagaatagcctaaggaaaat 6371



to top

>gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172188

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 183    gaaagaatagcctaaggaaaat 204
              ||||||||||||||||||||||
Sbjct: 155706 gaaagaatagcctaaggaaaat 155727



to top

>gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, complete sequence
          Length = 190817

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 208 gcatgatgaatgaacatgtatttta 232
           |||||||||| ||||||||||||||
Sbjct: 43  gcatgatgaaagaacatgtatttta 19



to top

>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence
          Length = 212083

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 208   gcatgatgaatgaacatgtatttta 232
             |||||||||| ||||||||||||||
Sbjct: 60572 gcatgatgaaagaacatgtatttta 60596



to top

>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence
          Length = 191037

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 317    tttcttcctcgcttagtcttgcaag 341
              ||||||||| |||||||||||||||
Sbjct: 156515 tttcttcctggcttagtcttgcaag 156539



to top

>gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, complete sequence
          Length = 168055

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   tttcttcctcgcttagtcttgcaag 341
             ||||||||| |||||||||||||||
Sbjct: 76456 tttcttcctggcttagtcttgcaag 76480



to top

>gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177260

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 317   tttcttcctcgcttagtcttg 337
             |||||||||||||||||||||
Sbjct: 91381 tttcttcctcgcttagtcttg 91401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,341,301
Number of Sequences: 3902068
Number of extensions: 6341301
Number of successful extensions: 112239
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112161
Number of HSP's gapped (non-prelim): 78
length of query: 732
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 709
effective length of database: 17,143,297,704
effective search space: 12154598072136
effective search space used: 12154598072136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top