ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39k10 |
|---|---|
| Clone Library Name | barley_pub |
>CYB51_ARATH (Q42342) Cytochrome b5 isoform 1| Length = 134 Score = 83.2 bits (204), Expect(2) = 1e-22 Identities = 39/64 (60%), Positives = 51/64 (79%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 MM+KY IGEID+S++PA RT+V PQQ ++ Q K + +IKILQFLVPI ILGLA +RHY Sbjct: 71 MMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHY 130 Query: 60 SKSE 49 +K + Sbjct: 131 TKKD 134 Score = 41.2 bits (95), Expect(2) = 1e-22 Identities = 17/22 (77%), Positives = 21/22 (95%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT+DFED+GHSD+AR Sbjct: 48 LSSTGKDATNDFEDVGHSDTAR 69
>CYB5_BRAOB (P40934) Cytochrome b5| Length = 134 Score = 82.4 bits (202), Expect(2) = 2e-22 Identities = 40/64 (62%), Positives = 50/64 (78%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 MMEKY+IGEID+ST+PA RT+V P Q ++ Q K + +IKILQFLVPI ILGLA +R Y Sbjct: 71 MMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQY 130 Query: 60 SKSE 49 +K E Sbjct: 131 TKKE 134 Score = 41.2 bits (95), Expect(2) = 2e-22 Identities = 17/22 (77%), Positives = 21/22 (95%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT+DFED+GHSD+AR Sbjct: 48 LSSTGKDATNDFEDVGHSDTAR 69
>CYB52_ARATH (O48845) Probable cytochrome b5 isoform 2| Length = 134 Score = 76.6 bits (187), Expect(2) = 2e-20 Identities = 36/63 (57%), Positives = 49/63 (77%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 MME+Y++GEID +TIP K + PP+Q + Q K ++ +IK+LQFLVP+ ILGLA GIR Y Sbjct: 71 MMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIY 130 Query: 60 SKS 52 +KS Sbjct: 131 TKS 133 Score = 40.4 bits (93), Expect(2) = 2e-20 Identities = 17/22 (77%), Positives = 20/22 (90%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT DFED+GHS+SAR Sbjct: 48 LSSTGKDATDDFEDVGHSESAR 69
>CYB5_ORYSA (P49100) Cytochrome b5| Length = 137 Score = 78.2 bits (191), Expect(2) = 3e-20 Identities = 37/64 (57%), Positives = 50/64 (78%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 MM++Y++G+ID STIPA+ +VPP+Q + Q K + +IKILQFLVP+ ILGLA IR Y Sbjct: 72 MMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIY 131 Query: 60 SKSE 49 +KSE Sbjct: 132 TKSE 135 Score = 38.1 bits (87), Expect(2) = 3e-20 Identities = 16/22 (72%), Positives = 19/22 (86%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT DFED+GHS +AR Sbjct: 49 LSSTGKDATDDFEDVGHSTTAR 70
>CYB5_TOBAC (P49098) Cytochrome b5| Length = 136 Score = 75.5 bits (184), Expect(2) = 3e-20 Identities = 31/62 (50%), Positives = 49/62 (79%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 M+++Y++G+ID++TIP K + PP Q + Q K ++ ++K+LQFLVP+ ILG+AFGIR Y Sbjct: 71 MLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFY 130 Query: 60 SK 55 +K Sbjct: 131 TK 132 Score = 40.4 bits (93), Expect(2) = 3e-20 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT DFED+GHS SAR Sbjct: 48 LSATGKDATDDFEDVGHSSSAR 69
>CYB5S_TOBAC (P49099) Cytochrome b5, seed isoform| Length = 135 Score = 73.9 bits (180), Expect(2) = 8e-20 Identities = 30/62 (48%), Positives = 48/62 (77%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 M+++Y++G+ID+STIP K + PP+Q + Q K + ++K+LQFLVP+ ILG+AFG+ Y Sbjct: 71 MLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFY 130 Query: 60 SK 55 +K Sbjct: 131 TK 132 Score = 40.8 bits (94), Expect(2) = 8e-20 Identities = 18/22 (81%), Positives = 19/22 (86%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT DFEDIGHS SAR Sbjct: 48 LSATGKDATDDFEDIGHSSSAR 69
>CYB5_CUSRE (P49097) Cytochrome b5| Length = 135 Score = 69.3 bits (168), Expect(2) = 1e-17 Identities = 32/62 (51%), Positives = 45/62 (72%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 MM++ +G+ID+STIP K ++ PP+Q + Q K +IK+LQFLVP+ ILG+A GIR Y Sbjct: 70 MMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFY 129 Query: 60 SK 55 K Sbjct: 130 KK 131 Score = 37.7 bits (86), Expect(2) = 1e-17 Identities = 17/22 (77%), Positives = 18/22 (81%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ T KDAT DFEDIGHS SAR Sbjct: 47 LSSTAKDATDDFEDIGHSSSAR 68
>CYB5_BOROF (O04354) Cytochrome b5| Length = 132 Score = 65.5 bits (158), Expect(2) = 5e-17 Identities = 29/63 (46%), Positives = 47/63 (74%) Frame = -1 Query: 240 MMEKYHIGEIDASTIPAKRTFVPPQQGSHVQAKDNDILIKILQFLVPIFILGLAFGIRHY 61 M+++Y++G+ID+S+IP++ + PP+Q + K + +IK+LQFLVP+ IL A GIR Y Sbjct: 68 MLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFY 127 Query: 60 SKS 52 +KS Sbjct: 128 TKS 130 Score = 39.7 bits (91), Expect(2) = 5e-17 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L+ TGKDAT DFEDIGHS SA+ Sbjct: 45 LSATGKDATDDFEDIGHSSSAK 66
>CYB5_RHIST (Q9HFV1) Cytochrome b5| Length = 131 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 GKDAT FEDIGHSD AR Sbjct: 50 GKDATEAFEDIGHSDEAR 67
>CYB5_MORAP (Q9Y706) Cytochrome b5| Length = 130 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G+DAT FED+GHSD AR Sbjct: 51 GRDATESFEDVGHSDEAR 68
>CYB5_NEUCR (Q9P5L0) Probable cytochrome b5| Length = 139 Score = 33.9 bits (76), Expect = 0.11 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L V G+D+T FED+GHSD AR Sbjct: 45 LDVAGQDSTEAFEDVGHSDEAR 66
>CYB5_DROME (Q9V4N3) Cytochrome b5 (CYTB5)| Length = 134 Score = 33.5 bits (75), Expect = 0.14 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 GKDAT +FED+GHS+ AR Sbjct: 53 GKDATENFEDVGHSNDAR 70
>CYB5_MUSDO (P49096) Cytochrome b5 (CYTB5)| Length = 134 Score = 32.3 bits (72), Expect = 0.31 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 GKDAT FED+GHS AR Sbjct: 53 GKDATEHFEDVGHSSDAR 70
>CYB5_ALOSE (P00168) Cytochrome b5 (Fragment)| Length = 87 Score = 32.0 bits (71), Expect = 0.40 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT DFED+GHS AR Sbjct: 52 GGDATEDFEDVGHSTDAR 69
>CYB5_HORSE (P00170) Cytochrome b5| Length = 133 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FEDIGHS AR Sbjct: 55 GGDATENFEDIGHSTDAR 72
>CYB5M_RAT (P04166) Cytochrome b5 outer mitochondrial membrane isoform| precursor Length = 146 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L G DAT FED+GHS AR Sbjct: 63 LEQAGADATESFEDVGHSPDAR 84
>CYB5M_MOUSE (Q9CQX2) Cytochrome b5 outer mitochondrial membrane isoform| precursor Length = 146 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L G DAT FED+GHS AR Sbjct: 63 LEQAGADATESFEDVGHSPDAR 84
>CYB5_CHICK (P00174) Cytochrome b5| Length = 138 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 61 GGDATENFEDVGHSTDAR 78
>CYB5_RAT (P00173) Cytochrome b5| Length = 133 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 55 GGDATENFEDVGHSTDAR 72
>CYB5_RABIT (P00169) Cytochrome b5| Length = 133 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 55 GGDATENFEDVGHSTDAR 72
>CYB5_PIG (P00172) Cytochrome b5| Length = 133 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 55 GGDATENFEDVGHSTDAR 72
>CYB5_MOUSE (P56395) Cytochrome b5| Length = 133 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 55 GGDATENFEDVGHSTDAR 72
>CYB5_HUMAN (P00167) Cytochrome b5| Length = 133 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 55 GGDATENFEDVGHSTDAR 72
>CYB5_BOVIN (P00171) Cytochrome b5| Length = 133 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSAR 246 G DAT +FED+GHS AR Sbjct: 55 GGDATENFEDVGHSTDAR 72
>CYB5_CANTR (Q874I5) Cytochrome b5| Length = 129 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSA 249 L G DAT F+DIGHSD A Sbjct: 51 LDCAGTDATEAFDDIGHSDEA 71
>CYB52_SCHPO (Q9USM6) Probable cytochrome b5 2| Length = 129 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/20 (50%), Positives = 16/20 (80%) Frame = -2 Query: 305 VTGKDATSDFEDIGHSDSAR 246 + G+DA+ FED+GHS+ A+ Sbjct: 48 LAGRDASGPFEDVGHSEDAQ 67
>APAH_LEGPL (Q5WSM5) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 276 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = +3 Query: 141 PWPGHGTLVEEVQM----YALLGWLKHQSLRCGTS 233 PW GH +EEV + L WL+ QSL C +S Sbjct: 79 PWKGHDDTLEEVMLADDGEELGHWLRKQSLLCRSS 113
>APAH_LEGPH (Q5ZRF6) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 276 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = +3 Query: 141 PWPGHGTLVEEVQM----YALLGWLKHQSLRCGTS 233 PW GH +EEV + L WL+ QSL C +S Sbjct: 79 PWKGHDDTLEEVMLADDGEELGHWLRKQSLLCRSS 113
>APAH_LEGPA (Q5X0V3) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 276 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = +3 Query: 141 PWPGHGTLVEEVQM----YALLGWLKHQSLRCGTS 233 PW GH +EEV + L WL+ QSL C +S Sbjct: 79 PWKGHDDTLEEVMLADDGEELGHWLRKQSLLCRSS 113
>CYB5_YEAST (P40312) Cytochrome b5| Length = 120 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 Query: 299 GKDATSDFEDIGHSDSA 249 G+DAT F DIGHSD A Sbjct: 49 GQDATESFVDIGHSDEA 65
>CYB5M_PONPY (Q5RDJ5) Cytochrome b5 outer mitochondrial membrane isoform| precursor Length = 146 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L G DA+ FED+GHS AR Sbjct: 63 LEQAGVDASESFEDVGHSSDAR 84
>CYB5M_HUMAN (O43169) Cytochrome b5 outer mitochondrial membrane isoform| precursor Length = 146 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 311 LAVTGKDATSDFEDIGHSDSAR 246 L G DA+ FED+GHS AR Sbjct: 63 LEQAGVDASESFEDVGHSSDAR 84
>HR3_DROME (P31396) Probable nuclear hormone receptor HR3 (dHR3)| Length = 487 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -1 Query: 213 IDASTIPAKRTFVPPQQGSHVQAKDNDILIKIL 115 +D++T + T + P+ SH ND+LIK L Sbjct: 213 VDSTTYEPRSTIIDPEFISHADGDINDVLIKTL 245
>AT10D_MOUSE (Q8K2X1) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)| (ATPVD) Length = 1416 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 283 ATLKISDTVIPQGEDDGEVPHRRD*CFNHP 194 A L S + + GE GEVPH R F+ P Sbjct: 514 AQLSGSTSAVGNGEGSGEVPHSRQAAFSSP 543
>VG9_BPPZA (P07534) Tail protein (Late protein GP9)| Length = 599 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +1 Query: 7 LKAISQKQLATNSLLRFAVVPDTKCKTQYKNGNKELQDLDEDV 135 L I ++ A N+++ V K YKNG+KEL+ LD+D+ Sbjct: 239 LTNIFSQKSAVNNIVNMYVTDYIGLKLDYKNGDKELK-LDKDM 280
>VG9_BPPH2 (P04331) Tail protein (Late protein GP9)| Length = 599 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +1 Query: 7 LKAISQKQLATNSLLRFAVVPDTKCKTQYKNGNKELQDLDEDV 135 L I ++ A N ++ V K YKNG+KEL+ LD+D+ Sbjct: 239 LTNIFSQKSAVNDIVNMYVTDYIGLKLDYKNGDKELK-LDKDM 280
>EST1A_MOUSE (P61406) Telomerase-binding protein EST1A (Ever shorter telomeres 1A)| (Telomerase subunit EST1A) (EST1-like protein A) Length = 1418 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 58 AVVPDTKCKTQYKNGNKELQDLDEDVII 141 A VPDT K K+L+D +EDV+I Sbjct: 1156 APVPDTMGKEMGSQEGKQLEDEEEDVVI 1183
>Y623_MYCPN (P75172) Probable ATP-dependent RNA helicase MG425 homolog (EC| 3.6.1.-) (C12_orf450) Length = 450 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +1 Query: 7 LKAISQKQLATNSLLRFAVVPDTKCKTQYKNGNKELQDLDE 129 L+ ++ K+++ +R ++P KCKTQ K G LQ + + Sbjct: 365 LEQVNDKRISPLRPMRLRLIP-LKCKTQPKKGKLSLQSVQK 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,080,381 Number of Sequences: 219361 Number of extensions: 1001159 Number of successful extensions: 2646 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2646 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
