>gb|AY106827.1| Zea mays PCO106542 mRNA sequence
          Length = 821

 Score =  101 bits (51), Expect = 1e-18
 Identities = 109/123 (88%), Gaps = 4/123 (3%)
 Strand = Plus / Minus

                                                                       
Query: 184 acgctttgctgggatggttgaagcatcaatctctccgatgtggtacttctccatcatcct 243
           ||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||  |
Sbjct: 429 acgctttgctgggattgttgaagcatctatctgcccgatgtggtacttctccatcat-gt 371

                                                                       
Query: 244 cnccttgcggaatcactgtgtccgatatcttcaaagtc-gctggttgcatctttcccggt 302
           | |||||||||||||||||| || |||||||| || || ||| || ||||||||||||||
Sbjct: 370 c-ccttgcggaatcactgtggccaatatcttcgaaatcagct-gtagcatctttcccggt 313

              
Query: 303 tac 305
           |||
Sbjct: 312 tac 310



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                       
Query: 46  ctactcagatttgctgtagtgccggataccaaatgcaagacccaatataaaaatgggaac 105
           |||||| |||||| | || || || |||||||||||||| ||||  || | |||||| ||
Sbjct: 567 ctactctgatttggtatactgacgtataccaaatgcaaggcccaggatcataatgggcac 508

                                                   
Query: 106 aaggaactgcaggatcttgatgaggatgtcattatccttg 145
           ||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 507 aaggaactgcaggatcttgatgaggagatcattattcttg 468

>ref|NM_197372.1| Oryza sativa (japonica cultivar-group) putative cytochrome
           (OSJNBa0076F20.10), mRNA
          Length = 758

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 109/127 (85%), Gaps = 2/127 (1%)
 Strand = Plus / Minus

                                                                       
Query: 182 gtacgctttgctgggatggttgaagcatcaatctctccgatgtggtacttctccatcatc 241
           ||||||||| ||||||||||||||||||||||||| || ||| | |||||||||||||| 
Sbjct: 389 gtacgctttactgggatggttgaagcatcaatctccccaatgagatacttctccatcat- 331

                                                                       
Query: 242 ctcnccttgcggaatcactgtgtccgatatcttcaaagtcgctggttgcatctttcccgg 301
           ||| |||||| || |||||||| || || |||||||| ||  ||||||| ||||| || |
Sbjct: 330 ctc-ccttgctgattcactgtggccaatgtcttcaaaatcattggttgcgtctttgccag 272

                  
Query: 302 ttactgc 308
           |||||||
Sbjct: 271 ttactgc 265



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 46  ctactcagatttgctgtagtgccggataccaaatgcaagacccaatataaaaatgggaac 105
           ||||||||||||| |||| ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct: 525 ctactcagatttggtgtactgccggatagcaaatgcaagccccaagatcaagatggggac 466

                                           
Query: 106 aaggaactgcaggatcttgatgaggatgtcat 137
           ||| ||||||| |||||| ||||| |||||||
Sbjct: 465 aagaaactgcaagatcttaatgagcatgtcat 434

>dbj|AK058780.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-C06, full
           insert sequence
          Length = 415

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 109/127 (85%), Gaps = 2/127 (1%)
 Strand = Plus / Minus

                                                                       
Query: 182 gtacgctttgctgggatggttgaagcatcaatctctccgatgtggtacttctccatcatc 241
           ||||||||| ||||||||||||||||||||||||| || ||| | |||||||||||||| 
Sbjct: 180 gtacgctttactgggatggttgaagcatcaatctccccaatgagatacttctccatcat- 122

                                                                       
Query: 242 ctcnccttgcggaatcactgtgtccgatatcttcaaagtcgctggttgcatctttcccgg 301
           ||| |||||| || |||||||| || || |||||||| ||  ||||||| ||||| || |
Sbjct: 121 ctc-ccttgctgattcactgtggccaatgtcttcaaaatcattggttgcgtctttgccag 63

                  
Query: 302 ttactgc 308
           |||||||
Sbjct: 62  ttactgc 56



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 46  ctactcagatttgctgtagtgccggataccaaatgcaagacccaatataaaaatgggaac 105
           ||||||||||||| |||| ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct: 316 ctactcagatttggtgtactgccggatagcaaatgcaagccccaagatcaagatggggac 257

                                           
Query: 106 aaggaactgcaggatcttgatgaggatgtcat 137
           ||| ||||||| |||||| ||||| |||||||
Sbjct: 256 aagaaactgcaagatcttaatgagcatgtcat 225

>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
              sequence
          Length = 165394

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                          
Query: 46     ctactcagatttgctgtagtgccggataccaaatgcaagacccaatataaaaatgggaac 105
              ||||||||||||| |||| ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct: 137630 ctactcagatttggtgtactgccggatagcaaatgcaagccccaagatcaagatggggac 137689

                                              
Query: 106    aaggaactgcaggatcttgatgaggatgtcat 137
              ||| ||||||| |||||| ||||| |||||||
Sbjct: 137690 aagaaactgcaagatcttaatgagcatgtcat 137721



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 99/115 (86%), Gaps = 2/115 (1%)
 Strand = Plus / Plus

                                                                          
Query: 182    gtacgctttgctgggatggttgaagcatcaatctctccgatgtggtacttctccatcatc 241
              ||||||||| ||||||||||||||||||||||||| || ||| | |||||||||||||| 
Sbjct: 137766 gtacgctttactgggatggttgaagcatcaatctccccaatgagatacttctccatcat- 137824

                                                                     
Query: 242    ctcnccttgcggaatcactgtgtccgatatcttcaaagtcgctggttgcatcttt 296
              ||| |||||| || |||||||| || || |||||||| ||  ||||||| |||||
Sbjct: 137825 ctc-ccttgctgattcactgtggccaatgtcttcaaaatcattggttgcgtcttt 137878

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                            
Query: 46       ctactcagatttgctgtagtgccggataccaaatgcaagacccaatataaaaatgggaac 105
                ||||||||||||| |||| ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct: 19509764 ctactcagatttggtgtactgccggatagcaaatgcaagccccaagatcaagatggggac 19509823

                                                
Query: 106      aaggaactgcaggatcttgatgaggatgtcat 137
                ||| ||||||| |||||| ||||| |||||||
Sbjct: 19509824 aagaaactgcaagatcttaatgagcatgtcat 19509855



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 99/115 (86%), Gaps = 2/115 (1%)
 Strand = Plus / Plus

                                                                            
Query: 182      gtacgctttgctgggatggttgaagcatcaatctctccgatgtggtacttctccatcatc 241
                ||||||||| ||||||||||||||||||||||||| || ||| | |||||||||||||| 
Sbjct: 19509900 gtacgctttactgggatggttgaagcatcaatctccccaatgagatacttctccatcat- 19509958

                                                                       
Query: 242      ctcnccttgcggaatcactgtgtccgatatcttcaaagtcgctggttgcatcttt 296
                ||| |||||| || |||||||| || || |||||||| ||  ||||||| |||||
Sbjct: 19509959 ctc-ccttgctgattcactgtggccaatgtcttcaaaatcattggttgcgtcttt 19510012

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                            
Query: 46       ctactcagatttgctgtagtgccggataccaaatgcaagacccaatataaaaatgggaac 105
                ||||||||||||| |||| ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct: 19521040 ctactcagatttggtgtactgccggatagcaaatgcaagccccaagatcaagatggggac 19521099

                                                
Query: 106      aaggaactgcaggatcttgatgaggatgtcat 137
                ||| ||||||| |||||| ||||| |||||||
Sbjct: 19521100 aagaaactgcaagatcttaatgagcatgtcat 19521131



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 99/115 (86%), Gaps = 2/115 (1%)
 Strand = Plus / Plus

                                                                            
Query: 182      gtacgctttgctgggatggttgaagcatcaatctctccgatgtggtacttctccatcatc 241
                ||||||||| ||||||||||||||||||||||||| || ||| | |||||||||||||| 
Sbjct: 19521176 gtacgctttactgggatggttgaagcatcaatctccccaatgagatacttctccatcat- 19521234

                                                                       
Query: 242      ctcnccttgcggaatcactgtgtccgatatcttcaaagtcgctggttgcatcttt 296
                ||| |||||| || |||||||| || || |||||||| ||  ||||||| |||||
Sbjct: 19521235 ctc-ccttgctgattcactgtggccaatgtcttcaaaatcattggttgcgtcttt 19521288

>gb|M87514.1|BNACYTB5A Brassica oleracea cytochrome b-5 mRNA, complete cds
          Length = 738

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 80  gcaagacccaatataaaaatgggaacaaggaactgcaggatcttgat 126
           ||||||||||| || || || |||||||||||||| |||||||||||
Sbjct: 466 gcaagacccaagatcaagattggaacaaggaactgaaggatcttgat 420

>dbj|D10954.1|RIC258CB5 Oryza sativa mRNA for cytochrome b5
          Length = 445

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 182 gtacgctttgctgggatggttgaagcatc 210
           ||||||||| |||||||||||||||||||
Sbjct: 316 gtacgctttactgggatggttgaagcatc 288

>gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 230130

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 139    atccttggcctggacatgggac 160
              ||||||||||||||||||||||
Sbjct: 105003 atccttggcctggacatgggac 105024

>gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, complete sequence
          Length = 159298

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 11    aagctatttctcagaagcaact 32
             ||||||||||||||||||||||
Sbjct: 52324 aagctatttctcagaagcaact 52345

>emb|AL589678.9| Human DNA sequence from clone RP11-74C3 on chromosome 9 Contains the 3'
             end of a novel gene, complete sequence
          Length = 134922

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 89    aatataaaaatgggaacaagga 110
             ||||||||||||||||||||||
Sbjct: 17752 aatataaaaatgggaacaagga 17731

>dbj|BS000606.1| Pan troglodytes chromosome Y clone:PTBY-009G03, complete sequences
          Length = 113454

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     aagctatttctcagaagcaact 32
              ||||||||||||||||||||||
Sbjct: 108794 aagctatttctcagaagcaact 108815

>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences
          Length = 161601

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 11   aagctatttctcagaagcaact 32
            ||||||||||||||||||||||
Sbjct: 5803 aagctatttctcagaagcaact 5824

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 11       aagctatttctcagaagcaact 32
                ||||||||||||||||||||||
Sbjct: 15502080 aagctatttctcagaagcaact 15502059

>gb|AC022089.7| Homo sapiens chromosome 5 clone CTB-125N5, complete sequence
          Length = 44504

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 7    ttgaaagctatttctcagaagc 28
            ||||||||||||||||||||||
Sbjct: 4053 ttgaaagctatttctcagaagc 4032

>gb|AC010428.7| Homo sapiens chromosome 5 clone CTD-2199C13, complete sequence
          Length = 134420

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 7     ttgaaagctatttctcagaagc 28
             ||||||||||||||||||||||
Sbjct: 56971 ttgaaagctatttctcagaagc 56992

>gb|AC011403.4|AC011403 Homo sapiens chromosome 5 clone CTB-3P13, complete sequence
          Length = 124552

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 7     ttgaaagctatttctcagaagc 28
             ||||||||||||||||||||||
Sbjct: 22711 ttgaaagctatttctcagaagc 22690

>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence
          Length = 195439

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     aagctatttctcagaagcaact 32
              ||||||||||||||||||||||
Sbjct: 111421 aagctatttctcagaagcaact 111442

>gb|AC123993.10| Mus musculus chromosome 3, clone RP24-357L20, complete sequence
          Length = 187115

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     gacccaatataaaaatgggaa 104
              |||||||||||||||||||||
Sbjct: 171704 gacccaatataaaaatgggaa 171724

>gb|AC133600.2| Mus musculus BAC clone RP24-399N24 from chromosome 3, complete sequence
          Length = 197428

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     gacccaatataaaaatgggaa 104
              |||||||||||||||||||||
Sbjct: 133851 gacccaatataaaaatgggaa 133831

>emb|BX548065.6| Mouse DNA sequence from clone RP23-163B21 on chromosome X, complete
              sequence
          Length = 225082

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 80     gcaagacccaatataaaaatgggaa 104
              |||||||||||||||| ||||||||
Sbjct: 196816 gcaagacccaatataataatgggaa 196792

>dbj|AP002346.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2387M17, complete
             sequences
          Length = 127295

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 85    acccaatataaaaatgggaacaagg 109
             |||||||||||||||||||| ||||
Sbjct: 57209 acccaatataaaaatgggaaaaagg 57233

>ref|XM_467691.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3726

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  tttgctgggatggttgaagc 207
            ||||||||||||||||||||
Sbjct: 3346 tttgctgggatggttgaagc 3365

>emb|AL355578.4| Human DNA sequence from clone RP11-29P20 on chromosome 13q31.1-31.3
              Contains part of a novel gene and a CpG island, complete
              sequence
          Length = 157949

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ttgaaagctatttctcagaa 26
              ||||||||||||||||||||
Sbjct: 132486 ttgaaagctatttctcagaa 132467

>gb|AC098798.4| Homo sapiens chromosome 4 clone RP11-579K7, complete sequence
          Length = 76445

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aatataaaaatgggaacaag 108
             ||||||||||||||||||||
Sbjct: 48876 aatataaaaatgggaacaag 48857

>emb|BX465858.8| Zebrafish DNA sequence from clone DKEY-179I14 in linkage group 17,
             complete sequence
          Length = 88708

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   gtacaaatgtacgctttgct 193
             ||||||||||||||||||||
Sbjct: 42341 gtacaaatgtacgctttgct 42360

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 188      tttgctgggatggttgaagc 207
                ||||||||||||||||||||
Sbjct: 30900066 tttgctgggatggttgaagc 30900085

>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tttgctgggatggttgaagc 207
             ||||||||||||||||||||
Sbjct: 83643 tttgctgggatggttgaagc 83662

>dbj|AK099845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109D01, full
            insert sequence
          Length = 3725

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  tttgctgggatggttgaagc 207
            ||||||||||||||||||||
Sbjct: 3345 tttgctgggatggttgaagc 3364

>dbj|AK059128.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G02, full
            insert sequence
          Length = 1406

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  tttgctgggatggttgaagc 207
            ||||||||||||||||||||
Sbjct: 1026 tttgctgggatggttgaagc 1045

>emb|CR388164.9| Zebrafish DNA sequence from clone DKEY-74H17 in linkage group 17,
             complete sequence
          Length = 115163

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   gtacaaatgtacgctttgct 193
             ||||||||||||||||||||
Sbjct: 38633 gtacaaatgtacgctttgct 38652

>emb|BX005199.10| Zebrafish DNA sequence from clone DKEY-12I13 in linkage group 20,
             complete sequence
          Length = 119113

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ccaacagcctactcagattt 57
             ||||||||||||||||||||
Sbjct: 63777 ccaacagcctactcagattt 63758

>dbj|AP001208.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1930G5
          Length = 154587

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   caaggaactgcaggatcttg 124
             ||||||||||||||||||||
Sbjct: 34149 caaggaactgcaggatcttg 34168


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,659,841
Number of Sequences: 3902068
Number of extensions: 2659841
Number of successful extensions: 43651
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43549
Number of HSP's gapped (non-prelim): 100
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)