ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39k04 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 193 bits (491), Expect = 4e-49 Identities = 89/133 (66%), Positives = 113/133 (84%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVTMST+EEA+KA+E +NRYD++GRLL VN+AA+RG R ERPPR F S+R YVGN+PW Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPW 239 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D+RL Q+FSEHG+VV+A +VYDRETGRSRGFGFVTMAS+ ++ AI+ LDGQ +DGR Sbjct: 240 GIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGR 299 Query: 336 PLRVNVAAERPQR 298 +RVNVA +R +R Sbjct: 300 TIRVNVAEDRSRR 312 Score = 72.8 bits (177), Expect = 9e-13 Identities = 33/82 (40%), Positives = 55/82 (67%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VGNLP+ + L ++F + G V A ++Y+R+T +SRGFGFVTM++ E+ + A+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 363 LDGQEMDGRPLRVNVAAERPQR 298 + +++GR L VN AA R +R Sbjct: 197 YNRYDVNGRLLTVNKAARRGER 218
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 188 bits (478), Expect = 1e-47 Identities = 88/133 (66%), Positives = 110/133 (82%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVTMS+++EA+ A+E FNRYD++GRLL VN+AA RGSR ER PR + +FR YVGNLPW Sbjct: 194 GFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPW 253 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 ++ RL Q+FSEHG+VV A +VYDRETGRSRGFGFVTM+ ++L+ AISALDGQ ++GR Sbjct: 254 DVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGR 313 Query: 336 PLRVNVAAERPQR 298 +RVNVA ERP R Sbjct: 314 AIRVNVAEERPPR 326 Score = 70.5 bits (171), Expect = 5e-12 Identities = 33/82 (40%), Positives = 52/82 (63%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VGNL + L +F + G V A ++Y+RET +SRGFGFVTM+S ++ ++A+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 363 LDGQEMDGRPLRVNVAAERPQR 298 + +++GR L VN AA R R Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSR 232
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 186 bits (471), Expect = 8e-47 Identities = 85/133 (63%), Positives = 112/133 (84%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVTMST+EEADKA+E +++YD++GRLL VN+AA RGSR ER PR F ++R YVGN+PW Sbjct: 141 GFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPW 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D+RL Q+FSEHG+VV+A +V+DRE+GRSRGFGFVTM+S+ ++ AI+ LDGQ +DGR Sbjct: 201 DIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGR 260 Query: 336 PLRVNVAAERPQR 298 +RVN A ERP+R Sbjct: 261 TIRVNAAEERPRR 273 Score = 77.0 bits (188), Expect = 5e-14 Identities = 37/82 (45%), Positives = 53/82 (64%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VGNLP+ + L Q+F + G V A ++Y+RET RSRGFGFVTM++ E+ D A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 363 LDGQEMDGRPLRVNVAAERPQR 298 +++GR L VN AA R R Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSR 179
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 176 bits (447), Expect = 5e-44 Identities = 86/135 (63%), Positives = 105/135 (77%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVTMST+EEA+KA+E N YD+ GR L VN+AA RGS P F S R YVGNLPW Sbjct: 99 GFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPW 158 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + SRL Q+FSEHG+VV+A +V DRETGRSRGFGFVTM+S+ +++ AI+ALDGQ +DGR Sbjct: 159 DVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218 Query: 336 PLRVNVAAERPQRGF 292 +RVNVA ERP+R F Sbjct: 219 AVRVNVAEERPRRAF 233 Score = 82.4 bits (202), Expect = 1e-15 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Frame = -2 Query: 588 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 409 G PP + + +VGNLP+ + +L +F G V A ++Y+RET RSRGFGF Sbjct: 45 GQGFSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100 Query: 408 VTMASKEDLDSAISALDGQEMDGRPLRVNVAAER--PQR 298 VTM++ E+ + A+ L+G +MDGR L VN AA R P+R Sbjct: 101 VTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 125 bits (313), Expect = 2e-28 Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 26/161 (16%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVE------------------- 574 GFVTMST EE + A + FN Y+I GR + VN R Sbjct: 131 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDG 190 Query: 573 -------RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 415 R R SS R YVGNL W +D L ++FSE G VV+A +VYDR++GRSRGF Sbjct: 191 NSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGF 250 Query: 414 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 292 GFVT +S ++++ AI +L+G ++DGR +RV+ A ERP+R F Sbjct: 251 GFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQF 291 Score = 82.4 bits (202), Expect = 1e-15 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 V PR F+ + +VGNLP+ + + L +F G V ++YD+ TGRSRGFGFVTM Sbjct: 77 VAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 268 ++KE++++A +G E+DGR +RVN A+R F G S Sbjct: 136 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 182
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 124 bits (312), Expect = 2e-28 Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 7/140 (5%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPR-------QFASSFRA 538 GFVTMS+ EE + A + FN Y++ GR L VN R R F SS R Sbjct: 131 GFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRV 190 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVGNL W + L +FSE G+VV+A +VYDR++GRSRGFGFVT +S E++++AI +LD Sbjct: 191 YVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLD 250 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G +++GR +RV+ A RP R Sbjct: 251 GVDLNGRAIRVSPAEARPPR 270 Score = 88.6 bits (218), Expect = 2e-17 Identities = 39/81 (48%), Positives = 57/81 (70%) Frame = -2 Query: 564 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 385 R F+ + +VGNLP+ A+ + L ++F G V ++YD+ TGRSRGFGFVTM+SKE+ Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 384 LDSAISALDGQEMDGRPLRVN 322 +++A +G E+DGR LRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 124 bits (311), Expect = 3e-28 Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 26/161 (16%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVE------------------- 574 GFVTMST EE + A + FN Y+I GR + VN R Sbjct: 132 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDG 191 Query: 573 -------RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 415 R R SS R YVGNL W +D L ++FSE G VV+A +VYDR++GRSRGF Sbjct: 192 NSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGF 251 Query: 414 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 292 GFVT +S ++++ AI +L+G ++DGR +RV+ A ERP+R F Sbjct: 252 GFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292 Score = 80.5 bits (197), Expect = 5e-15 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 V PR F+ + +VGNLP+ + + L +F G V ++YD+ +GRSRGFGFVTM Sbjct: 78 VAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTM 136 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 268 ++KE++++A +G E+DGR +RVN A+R F G S Sbjct: 137 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 183
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 123 bits (308), Expect = 6e-28 Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 13/146 (8%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQ-------------F 556 GFVTMS+ EE + A + FN Y++ GR L VN R R+ F Sbjct: 131 GFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSF 190 Query: 555 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 376 SS R YVGNL W + L +FSE G+VV+A +VYDR++GRSRGFGFVT +S E++++ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250 Query: 375 AISALDGQEMDGRPLRVNVAAERPQR 298 AI +LDG +++GR +RV+ A RP R Sbjct: 251 AIESLDGVDLNGRAIRVSPAEARPPR 276 Score = 84.7 bits (208), Expect = 2e-16 Identities = 38/81 (46%), Positives = 56/81 (69%) Frame = -2 Query: 564 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 385 R F+ + +VGNL + A+ + L ++F G V ++YD+ TGRSRGFGFVTM+SKE+ Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 384 LDSAISALDGQEMDGRPLRVN 322 +++A +G E+DGR LRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 119 bits (299), Expect = 7e-27 Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 19/152 (12%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF--------- 544 GFVTMS++ E + A + FN Y++ GR L VN R + R SSF Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGG 194 Query: 543 ----------RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R YVGNL W +D L +FSE G+VV A ++YDR++GRS+GFGFVT S Sbjct: 195 GGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +++ +AI +LDG ++DGR +RV+ A RP R Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286 Score = 91.7 bits (226), Expect = 2e-18 Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Frame = -2 Query: 570 PPRQ--FASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 PP++ F++ + +VGNLP+ + ++L Q+F G V ++YD+ TGRSRGFGFVTM+ Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140 Query: 396 SKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 S ++++A +G E+DGRPLRVN P+R Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 98.2 bits (243), Expect = 2e-20 Identities = 43/86 (50%), Positives = 64/86 (74%) Frame = -2 Query: 552 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 S R YVGNL W +D L +F+E G+VV A ++YDR++GRS+GFGFVT++S +++ A Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314 Query: 372 ISALDGQEMDGRPLRVNVAAERPQRG 295 I++L+G ++DGR +RV+ A RP RG Sbjct: 315 INSLNGADLDGRQIRVSEAEARPPRG 340 Score = 83.2 bits (204), Expect = 7e-16 Identities = 39/94 (41%), Positives = 59/94 (62%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 VER F+ + +VGNL + + ++L Q+F G V ++YD+ TGRSRGFGFVTM Sbjct: 90 VER--NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 ++ ++++A +G E +GRPLRVN P+R Sbjct: 148 STAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKR 181 Score = 37.7 bits (86), Expect = 0.034 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVE---RPPR 562 GFVTMST E + A + FN Y+ GR L VN R E R PR Sbjct: 143 GFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190 Score = 36.2 bits (82), Expect = 0.098 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSR 580 GFVT+S+ +E KAI + N D+ GR + V+ A R R Sbjct: 301 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 96.3 bits (238), Expect = 8e-20 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 9/138 (6%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVN-----RAAQR---GSRVERPPRQFASS-FR 541 FVTM ++EEA +AI F+ + GR + VN R +R +++ + F S + Sbjct: 159 FVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHK 218 Query: 540 AYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 361 YV NL W L F++ ++A ++YDR +GRSRGFGF+T +S E ++SA+ + Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278 Query: 360 DGQEMDGRPLRVNVAAER 307 + E++GRPLR+NVA ++ Sbjct: 279 NEVELEGRPLRLNVAGQK 296 Score = 84.7 bits (208), Expect = 2e-16 Identities = 46/123 (37%), Positives = 63/123 (51%) Frame = -2 Query: 690 VTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQA 511 + +ST +E D L+ + + ER + R YVGNLP+ Sbjct: 66 IFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSM 125 Query: 510 EDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPL 331 S+L ++F+E G V N IVYDR T RSRGF FVTM S E+ AI DG ++ GR + Sbjct: 126 TSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTV 185 Query: 330 RVN 322 +VN Sbjct: 186 KVN 188
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 86.7 bits (213), Expect = 6e-17 Identities = 39/84 (46%), Positives = 56/84 (66%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W +D L FS++GEV+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 366 ALDGQEMDGRPLRVNVAAERPQRG 295 ++GQ++DGR + VN A R G Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSGG 91 Score = 33.9 bits (76), Expect = 0.48 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS 583 GFVT + AIE N D+ GR + VN A RGS Sbjct: 52 GFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGS 89
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 85.9 bits (211), Expect = 1e-16 Identities = 39/84 (46%), Positives = 54/84 (64%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W D L Q FS+ G++ ++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 366 ALDGQEMDGRPLRVNVAAERPQRG 295 ++GQE+DGR + VN A R G Sbjct: 66 GMNGQELDGRNITVNEAQSRGSGG 89 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS 583 GFVT + AIE N ++ GR + VN A RGS Sbjct: 50 GFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGS 87
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 85.1 bits (209), Expect = 2e-16 Identities = 38/80 (47%), Positives = 55/80 (68%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W D+ L + FS+ GEV+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+E+DGR + VN A R Sbjct: 66 EMNGKELDGRTITVNEAQSR 85
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 85.1 bits (209), Expect = 2e-16 Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 6/133 (4%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQ--RGSRV---ERPPRQFASS-FRAY 535 GFVTM T+E+A+ IE N +I GR + VN + G + + QF S ++ Y Sbjct: 128 GFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVY 187 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 +GNL + L FSE G+V+ A + T +S GFGFV+ +S+E++++AI AL+ Sbjct: 188 IGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNN 247 Query: 354 QEMDGRPLRVNVA 316 ++G+ +RVN A Sbjct: 248 SVLEGQKIRVNKA 260 Score = 71.6 bits (174), Expect = 2e-12 Identities = 35/83 (42%), Positives = 52/83 (62%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R YVGN+P + L + EHG + A ++YD+ +GRSR FGFVTM + ED ++ I Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 L+ E+ GR ++VN+ E+P G Sbjct: 145 LNDTEIGGRKIKVNI-TEKPLEG 166
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 84.3 bits (207), Expect = 3e-16 Identities = 37/84 (44%), Positives = 56/84 (66%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W +D L F+++G+V+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 366 ALDGQEMDGRPLRVNVAAERPQRG 295 ++GQ++DGR + VN A R G Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSGG 91 Score = 33.5 bits (75), Expect = 0.63 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS 583 GFVT + AIE N D+ GR + VN A RGS Sbjct: 52 GFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGS 89
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 83.2 bits (204), Expect = 7e-16 Identities = 37/80 (46%), Positives = 54/80 (67%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W ++ L FS+ GE+V++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++GQ++DGR + VN A R Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87 Score = 33.9 bits (76), Expect = 0.48 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS 583 GFVT + AIE N D+ GR + VN A RGS Sbjct: 52 GFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGS 89
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 82.8 bits (203), Expect = 9e-16 Identities = 38/82 (46%), Positives = 56/82 (68%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 S + ++G L W +D+ L F+ G+VV+A ++ DRETGRSRGFGFV + +AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 369 SALDGQEMDGRPLRVNVAAERP 304 S +DG+E++GR +RVN A +RP Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 82.0 bits (201), Expect = 2e-15 Identities = 36/80 (45%), Positives = 55/80 (68%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W + L Q F+ G+V+++ ++ DRETGRSRGFGFVT +S++ + AI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+E+DGR + VN A R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRG 586 GFVT S+ + AIE N ++ GR + VN+A RG Sbjct: 52 GFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRG 88
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 81.3 bits (199), Expect = 3e-15 Identities = 37/84 (44%), Positives = 55/84 (65%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W D L + FS+ G+V+++ I+ DRE+GRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 366 ALDGQEMDGRPLRVNVAAERPQRG 295 ++G+E+DGR + VN A R G Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGG 89 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS 583 GFVT + AIE N ++ GR++ VN A RGS Sbjct: 50 GFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGS 87
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 80.5 bits (197), Expect = 5e-15 Identities = 35/80 (43%), Positives = 54/80 (67%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +R +VG L W + L F+ +GE++++ ++ DRETGRSRGFGFVT +S+ + AI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+E+DGR + VN A R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRG 586 GFVT S+ AIE N ++ GR + VN+A RG Sbjct: 52 GFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRG 88
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 78.2 bits (191), Expect = 2e-14 Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 5/136 (3%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS-----SFRAYV 532 G+V A+KAI+ +I GR +N + + + + ++F S ++ Sbjct: 212 GYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFL 271 Query: 531 GNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 352 GNL + A+ + ++F++HGEVV+ I ET + +GFG+V ++ ED A+ AL G+ Sbjct: 272 GNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGE 331 Query: 351 EMDGRPLRVNVAAERP 304 +D RP+R++ ++ RP Sbjct: 332 YIDNRPVRLDFSSPRP 347 Score = 69.3 bits (168), Expect = 1e-11 Identities = 29/78 (37%), Positives = 48/78 (61%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +VG L W +D L + F G V+ A ++Y+R T RSRG+G+V +K + AI + Sbjct: 171 FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQ 230 Query: 357 GQEMDGRPLRVNVAAERP 304 G+E+DGRP+ +++ +P Sbjct: 231 GKEIDGRPINCDMSTSKP 248
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 78.2 bits (191), Expect = 2e-14 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS--SFRAYVGNLP 520 FV +A+ A++T N I ++ +N A Q +Q +S +F +VG+L Sbjct: 118 FVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS--------QQSSSDDTFNLFVGDLN 169 Query: 519 WQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 340 +D L F + ++ +++D +TG SRG+GFV+ S++D +A+ ++ GQ+++G Sbjct: 170 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 229 Query: 339 RPLRVNVAAER 307 RPLR+N AA+R Sbjct: 230 RPLRINWAAKR 240 Score = 32.0 bits (71), Expect = 1.8 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -2 Query: 540 AYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 361 AY+GN+P A ++ L+ +F G + D + +G F+ + E I AL Sbjct: 342 AYIGNIPHFATEADLIPLFQNFG------FILDFKHYPEKGCCFIKYDTHEQAAVCIVAL 395 Query: 360 DGQEMDGRPLRVNVAAER 307 GR LR ER Sbjct: 396 ANFPFQGRNLRTGWGKER 413 Score = 31.6 bits (70), Expect = 2.4 Identities = 13/36 (36%), Positives = 25/36 (69%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQR 589 GFV+ ++ ++A A+++ D++GR L +N AA+R Sbjct: 205 GFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 240
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 76.6 bits (187), Expect = 7e-14 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A+KA+E N +ISG+++ V RA ++ R R+F Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL +D +L + FS G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVGSKPLYVALAQRKEER 374 Score = 69.7 bits (169), Expect = 8e-12 Identities = 40/132 (30%), Positives = 69/132 (52%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV T E ADKAIE N ++ R + V R R R + Y+ N + Sbjct: 142 FVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 +D L ++FS+ G+ ++ ++ D G+S+GFGFV+ ED + A+ ++G+E+ G+ Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260 Query: 333 LRVNVAAERPQR 298 + V A ++ +R Sbjct: 261 IFVGRAQKKVER 272
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 76.6 bits (187), Expect = 7e-14 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + E+AD AI+ N + G+ + VN+A+ ++ ++GNL Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD-------VGANIFIGNLDP 109 Query: 516 QAEDSRLVQMFSEHGEVVNAT-IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 340 + ++ L FS G ++ I+ D +TG S+G+ F+ AS + D+AI A++GQ + Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169 Query: 339 RPLRVNVAAERPQRGF*CGAAAESMAWRFSWTHGNTAEMLLQKTEACHHLKLPH*PPDAG 160 RP+ V+ A ++ +G G+AAE + A+ L + + H L PP + Sbjct: 170 RPITVSYAFKKDSKGERHGSAAERLL---------AAQNPLSQADRPHQLFADAPPPPSA 220 Query: 159 SPPI 148 P+ Sbjct: 221 PNPV 224 Score = 59.3 bits (142), Expect = 1e-08 Identities = 30/75 (40%), Positives = 47/75 (62%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG L + + L ++F + G VVN + DR TG+ +G+GFV S+ED D AI ++ Sbjct: 16 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75 Query: 357 GQEMDGRPLRVNVAA 313 ++ G+P+RVN A+ Sbjct: 76 MIKLYGKPIRVNKAS 90
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 75.5 bits (184), Expect = 1e-13 Identities = 44/133 (33%), Positives = 71/133 (53%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AI+T N ++ R + V R R + Y+ N Sbjct: 141 GFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL ++FS G ++ ++ D +TGRSRGFGFV + E+ A+S ++G+E++GR Sbjct: 201 DMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 Query: 336 PLRVNVAAERPQR 298 + V A +R +R Sbjct: 260 MIYVGRAQKRIER 272 Score = 75.1 bits (183), Expect = 2e-13 Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV EEA KA+ N +++GR++ V RA +R R R+F Sbjct: 234 GFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS +G + +A ++ E G S+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVSTKPLYVALAQRKEER 374 Score = 44.7 bits (104), Expect = 3e-04 Identities = 34/138 (24%), Positives = 64/138 (46%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 ++ +A++A++T N I GR + + +QR P + + ++ NL Sbjct: 56 YINFQQPADAERALDTMNFEVIKGRPIRI-MWSQRD-----PGLRKSGVGNVFIKNLDES 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D SRG+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGA 280 + V R +R GA Sbjct: 168 VFVGHFKSRRERELEYGA 185
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 73.9 bits (180), Expect = 4e-13 Identities = 43/133 (32%), Positives = 71/133 (53%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AI+T N ++ R + V R R + Y+ N Sbjct: 141 GFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL ++FS G ++ ++ D ++GRSRGFGFV + E+ A+S ++G+E++GR Sbjct: 201 DMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 Query: 336 PLRVNVAAERPQR 298 + V A +R +R Sbjct: 260 MIYVGRAQKRIER 272 Score = 73.6 bits (179), Expect = 6e-13 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV EEA KA+ N +++GR++ V RA +R R R+F Sbjct: 234 GFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + F +G + +A ++ E G S+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVSTKPLYVALAQRKEER 374 Score = 43.9 bits (102), Expect = 5e-04 Identities = 34/138 (24%), Positives = 63/138 (45%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 ++ +A++A++T N I GR + + +QR P + + ++ NL Sbjct: 56 YINFQQPADAERALDTMNFEVIKGRPIRI-MWSQRD-----PGLRKSGVGNVFIKNLDES 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D SRG+GFV + E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGA 280 + V R +R GA Sbjct: 168 VFVGHFKSRRERELEYGA 185
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.6 bits (179), Expect = 6e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.6 bits (179), Expect = 6e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 73.6 bits (179), Expect = 6e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 73.6 bits (179), Expect = 6e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 9e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 363 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 277 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 72.8 bits (177), Expect = 9e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 363 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 277 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 9e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 363 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 277 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 9e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 363 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 277 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 9e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 363 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 277 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 72.8 bits (177), Expect = 9e-13 Identities = 37/80 (46%), Positives = 49/80 (61%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVGNL + ++ L +F+E+G V + DRETGR RGFGFV + + + +AI ALD Sbjct: 4 YVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALD 63 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G E GR L+VN A R R Sbjct: 64 GAEWMGRDLKVNKAKPRENR 83
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 72.8 bits (177), Expect = 9e-13 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV EEA KA+ N +++GR++ V RA +R R R+F Sbjct: 234 GFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS +G + + ++ E G S+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVSTKPLYVALAQRKEER 374 Score = 72.0 bits (175), Expect = 2e-12 Identities = 42/133 (31%), Positives = 70/133 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AI+T N ++ R + V R R + Y+ N Sbjct: 141 GFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL ++FS G ++ ++ D +GRSRGFGFV + E+ A++ ++G+E++GR Sbjct: 201 DMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259 Query: 336 PLRVNVAAERPQR 298 + V A +R +R Sbjct: 260 MVYVGRAQKRIER 272 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/138 (26%), Positives = 67/138 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 ++ +A++A++T N I GR + + +QR P + + ++ NL Sbjct: 56 YINFQQPADAERALDTMNFEVIKGRPIRI-MWSQRD-----PGLRKSGVGNVFIKNLDDS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G++++ +V D E G SRG+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGA 280 + V R +R GA Sbjct: 168 VFVGHFKSRRERELEYGA 185
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 72.4 bits (176), Expect = 1e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A KA++ N D++G+ + V RA ++ R R+F Sbjct: 234 GFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + F+ G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/133 (28%), Positives = 69/133 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AI+ N ++ R + V R R R + Y+ N Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL + F ++G ++ ++ D + G+SRGFGFV+ ED A+ ++G++++G+ Sbjct: 201 DMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 AIFVGRAQKKVER 272 Score = 44.3 bits (103), Expect = 4e-04 Identities = 36/141 (25%), Positives = 68/141 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N I G+ + + +QR P + + ++ NL Sbjct: 56 YVNFQQPADAERALDTMNFDVIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V R +R GA A+ Sbjct: 168 VFVGRFKSRKEREAELGARAK 188
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 72.0 bits (175), Expect = 2e-12 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDIS-GRLLNVNRAAQRGSRVERPPRQFAS---------- 550 GFV T E A+ A++ N D+ G+ L V RA ++ R + R+F Sbjct: 226 GFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVF 285 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 YV NL +D RL FS +G + +A ++ D E GRS+GFGFV + + A+ Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAV 344 Query: 369 SALDGQEMDGRPLRVNVAAERPQR 298 + L+G+ + +PL V +A + +R Sbjct: 345 TELNGRVVGSKPLYVALAQRKEER 368 Score = 63.9 bits (154), Expect = 4e-10 Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A+ +I+ N ++G+ + V + R R + + YV N Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTE 192 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM-DG 340 +D +L + F +G++ + ++ +E G+S+GFGFV + E ++A+ AL+G++M +G Sbjct: 193 DFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEG 251 Query: 339 RPLRVNVAAERPQR 298 + L V A ++ +R Sbjct: 252 KSLYVARAQKKAER 265 Score = 43.1 bits (100), Expect = 8e-04 Identities = 21/71 (29%), Positives = 36/71 (50%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+LP +S L FS G V++ + D T RS G+ +V D + A+ ++ Sbjct: 5 YVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN 64 Query: 357 GQEMDGRPLRV 325 + +P+R+ Sbjct: 65 FDLVRNKPIRI 75 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/132 (21%), Positives = 64/132 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N + + + + +QR + R + ++ NL Sbjct: 47 YVNFQQPADAERALDTMNFDLVRNKPIRI-MWSQRDPSLRR-----SGVGNVFIKNLDRA 100 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ + FS G +++ + D E G S+G+GFV ++E +++I ++G ++G+ Sbjct: 101 IDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKK 159 Query: 333 LRVNVAAERPQR 298 + V R +R Sbjct: 160 VYVGKFIPRKER 171
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 72.0 bits (175), Expect = 2e-12 Identities = 40/133 (30%), Positives = 70/133 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AIE N ++ R + V R R R + Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL ++F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++G+E++G+ Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 QIYVGRAQKKVER 272 Score = 71.6 bits (174), Expect = 2e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A KA++ N +++G+ + V RA ++ R R+F Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 44.3 bits (103), Expect = 4e-04 Identities = 36/141 (25%), Positives = 68/141 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N I G+ + + +QR P + + ++ NL Sbjct: 56 YVNFQQPADAERALDTMNFDVIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V R +R GA A+ Sbjct: 168 VFVGRFKSRKEREAELGARAK 188
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 71.6 bits (174), Expect = 2e-12 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 1/145 (0%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV E+AD AI+ N + G+ + VN+A+ ++ +VGNL Sbjct: 57 GFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMD-------VGANIFVGNLDP 109 Query: 516 QAEDSRLVQMFSEHGEVVNAT-IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 340 + ++ L FS G ++ I+ D ++G S+GF F+ AS E D+A+ A++GQ + Sbjct: 110 EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCN 169 Query: 339 RPLRVNVAAERPQRGF*CGAAAESM 265 R + V+ A +R +G G AAE M Sbjct: 170 RAITVSYAFKRDSKGERHGTAAERM 194 Score = 53.9 bits (128), Expect = 5e-07 Identities = 28/75 (37%), Positives = 44/75 (58%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG L + +S L ++ + G VV+ + DR T +GFGFV +ED D AI L+ Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75 Query: 357 GQEMDGRPLRVNVAA 313 ++ G+P++VN A+ Sbjct: 76 MIKLYGKPIKVNKAS 90
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 71.6 bits (174), Expect = 2e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A KA++ N +++G+ + V RA ++ R R+F Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 70.5 bits (171), Expect = 5e-12 Identities = 39/133 (29%), Positives = 70/133 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AIE N ++ R + V R + R + Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL ++F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++G+E++G+ Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 QIYVGRAQKKVER 272 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/141 (24%), Positives = 68/141 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N I G+ + + +QR P + + ++ NL Sbjct: 56 YVNFQQPADAERALDTMNFDVIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V + +R GA A+ Sbjct: 168 VFVGRFKSQKEREAELGARAK 188
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 71.6 bits (174), Expect = 2e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A KA++ N +++G+ + V RA ++ R R+F Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 71.2 bits (173), Expect = 3e-12 Identities = 40/133 (30%), Positives = 69/133 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AIE N ++ R + V R R R + Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL +F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++G+E++G+ Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 QIYVGRAQKKVER 272 Score = 44.3 bits (103), Expect = 4e-04 Identities = 36/141 (25%), Positives = 68/141 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N I G+ + + +QR P + + ++ NL Sbjct: 56 YVNFQQPADAERALDTMNFDVIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V R +R GA A+ Sbjct: 168 VFVGRFKSRKEREAELGARAK 188
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 71.6 bits (174), Expect = 2e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A KA++ N +++G+ + V RA ++ R R+F Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 71.2 bits (173), Expect = 3e-12 Identities = 40/133 (30%), Positives = 69/133 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AIE N ++ R + V R R R + Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL +F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++G+E++G+ Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 QIYVGRAQKKVER 272 Score = 44.3 bits (103), Expect = 4e-04 Identities = 36/141 (25%), Positives = 68/141 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N I G+ + + +QR P + + ++ NL Sbjct: 56 YVNFQQPADAERALDTMNFDVIKGKPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V R +R GA A+ Sbjct: 168 VFVGRFKSRKEREAELGARAK 188
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 71.2 bits (173), Expect = 3e-12 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQF----------ASS 547 GFV E A A+E N + +L V RA ++ R E R+F + Sbjct: 272 GFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQG 331 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL +D +L +MFSE+G V ++ ++ + + G SRGFGFV ++ E+ A+S Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALS 390 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL + +A + R Sbjct: 391 EMNGKMIGRKPLYIALAQRKEDR 413 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/132 (23%), Positives = 61/132 (46%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 ++ S +A +A+E N + R + + + + P + + ++ NL Sbjct: 93 YINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRD------PSTRLSGKGNIFIKNLDAS 146 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L + FS G +++ + D TGRS+G+GFV +E +AI L+G M+ + Sbjct: 147 IDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQ 205 Query: 333 LRVNVAAERPQR 298 + V R +R Sbjct: 206 VFVGHFIRRQER 217
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 71.2 bits (173), Expect = 3e-12 Identities = 34/64 (53%), Positives = 47/64 (73%) Frame = -2 Query: 486 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 FS +GEV+ + I+ DRET RSRGFGFVT +++E + SAI ++G+E+DGR + VN A R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66 Query: 306 PQRG 295 RG Sbjct: 67 GGRG 70 Score = 37.0 bits (84), Expect = 0.057 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSR 580 GFVT ST E AIE N ++ GR + VN A RG R Sbjct: 31 GFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 70.9 bits (172), Expect = 4e-12 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASS---------- 547 GFV+ E+A KA++ N +++G+ + V RA ++ R R F Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQV 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 70.1 bits (170), Expect = 6e-12 Identities = 39/133 (29%), Positives = 70/133 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AI+ N ++GR + V + R R + Y+ N Sbjct: 141 GFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGE 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D RL +F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++G+E++G+ Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 QIYVGRAQKKVER 272 Score = 43.9 bits (102), Expect = 5e-04 Identities = 37/141 (26%), Positives = 66/141 (46%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V ++A+ A++T N I G+ + + +QR P + + +V NL Sbjct: 56 YVNFQHTKDAEHALDTMNFDVIKGKPVRI-MWSQRD-----PSLRKSGVGNIFVKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L S G +++ +V D E G S+G+GFV + E + AI ++G ++GR Sbjct: 110 INNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V R +R GA A+ Sbjct: 168 VFVGQFKSRKEREAELGARAK 188
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 70.1 bits (170), Expect = 6e-12 Identities = 30/97 (30%), Positives = 59/97 (60%) Frame = -2 Query: 594 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 415 +R +++ +P + + +VG L W +D L Q F E+G +V A ++ D ++GRS+G+ Sbjct: 247 ERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGY 306 Query: 414 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 304 G+V + E +A++A +E+DGR + ++++ RP Sbjct: 307 GYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343 Score = 59.7 bits (143), Expect = 8e-09 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 11/145 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF--------- 544 G+V T E A A+ +I GR++N++ + R + + +Q A +F Sbjct: 307 GYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSD 366 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 +VGNL + A + L F G++ + + D ++GR +GFG+VT + D+DSA Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS---DIDSAKKC 423 Query: 363 --LDGQEMDGRPLRVNVAAERPQRG 295 ++G + GRP R++ + R G Sbjct: 424 VEMNGHFIAGRPCRLDFSTPRTGGG 448
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 70.1 bits (170), Expect = 6e-12 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV+ E+A KA++ N D++G+ + V RA ++ R R+F Sbjct: 234 GFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL +D RL + F G + +A ++ E GRS+GFGFV +S E+ A++ Sbjct: 294 VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 352 EMNGRIVATKPLYVALAQRKEER 374 Score = 70.1 bits (170), Expect = 6e-12 Identities = 39/133 (29%), Positives = 69/133 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E A++AI+ N ++ R + V R R R + Y+ N Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGD 200 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 D RL +MF ++G ++ ++ D + G+S+GFGFV+ ED A+ ++G++M+G+ Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259 Query: 336 PLRVNVAAERPQR 298 + V A ++ +R Sbjct: 260 SMFVGRAQKKVER 272 Score = 45.4 bits (106), Expect = 2e-04 Identities = 37/141 (26%), Positives = 68/141 (48%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V +A++A++T N I GR + + +QR P + + ++ NL Sbjct: 56 YVNFQQPADAERALDTMNFDVIKGRPVRI-MWSQRD-----PSLRKSGVGNIFIKNLDKS 109 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++G ++ R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167 Query: 333 LRVNVAAERPQRGF*CGAAAE 271 + V R +R GA A+ Sbjct: 168 VFVGRFKSRKEREAELGARAK 188
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 69.3 bits (168), Expect = 1e-11 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV E+A KA+E N +++G L V RA ++ R+ +Q+ + Sbjct: 261 GFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQG 320 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 +V NL +D +L + F+ +G + +A ++ E G+S+GFGFV ++ E+ AI+ Sbjct: 321 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAIT 379 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 + Q + G+PL V +A + R Sbjct: 380 EKNQQIVAGKPLYVAIAQRKDVR 402 Score = 59.3 bits (142), Expect = 1e-08 Identities = 38/133 (28%), Positives = 66/133 (49%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV A +AI+ N ++G+ + V R R + A YV N+ Sbjct: 168 GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINS 227 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + D + ++F++ G +V+A++ D + G+ +GFGFV ED A+ AL+ E++G Sbjct: 228 ETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGE 286 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 287 KLYVGRAQKKNER 299 Score = 53.5 bits (127), Expect = 6e-07 Identities = 40/132 (30%), Positives = 63/132 (47%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V + E KAIE N I GRL + +QR P + S ++ NL Sbjct: 82 YVNFNDHEAGRKAIEQLNYTPIKGRLCRI-MWSQRD-----PSLRKKGSGNIFIKNLHPD 135 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L FS G+++++ I D E G+S+GFGFV + AI AL+G ++G+ Sbjct: 136 IDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 194 Query: 333 LRVNVAAERPQR 298 + V R +R Sbjct: 195 IYVAPHLSRKER 206
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 68.6 bits (166), Expect = 2e-11 Identities = 43/134 (32%), Positives = 69/134 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ ++ E+A +A+ + N+ +I GR + + RGS P + S +V L Sbjct: 529 FIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSED 584 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F V A IV DRETG S+GFGFV S+ED +A A++ E+DG Sbjct: 585 TTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 641 Query: 333 LRVNVAAERPQRGF 292 + ++ A + + GF Sbjct: 642 VTLDWAKPKGEGGF 655 Score = 50.1 bits (118), Expect = 7e-06 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRA---YVGNL 523 ++ + +A+K +E +I GR +++ ++G R ER + S + + NL Sbjct: 436 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNL 495 Query: 522 PWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 + A + L ++F E V G+S+G+ F+ AS ED A+++ + E++ Sbjct: 496 SYSATEETLQEVF----EKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIE 551 Query: 342 GRPLRVNVAAER 307 GR +R+ + R Sbjct: 552 GRTIRLELQGPR 563 Score = 44.7 bits (104), Expect = 3e-04 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 5/180 (2%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ +KA+E + G + + + R S+ R R + NL + Sbjct: 353 GYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK------NLSF 405 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L ++F + E+ + + GRS+G ++ S+ D + + G E+DGR Sbjct: 406 NITEDELKEVFEDAVEIRLVS-----QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 460 Query: 336 PLRVNVAAERPQRGF*CGA----AAESMAWRFS-WTHGNTAEMLLQKTEACHHLKLPH*P 172 + + E+ QR G + ES S ++ T E L + E +K+P P Sbjct: 461 SVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNP 520 Score = 32.0 bits (71), Expect = 1.8 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 F ++GNL + L SE N D TG +R FG+V S EDL+ A+ Sbjct: 310 FNLFIGNLNPNKSVAELKVAISELF-AKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALE 368 Query: 366 ALDGQEMDGRPLRV 325 L G ++ G +++ Sbjct: 369 -LTGLKVFGNEIKL 381
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 68.6 bits (166), Expect = 2e-11 Identities = 43/134 (32%), Positives = 69/134 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ ++ E+A +A+ + N+ +I GR + + RGS P + S +V L Sbjct: 526 FIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSED 581 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F V A IV DRETG S+GFGFV S+ED +A A++ E+DG Sbjct: 582 TTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 638 Query: 333 LRVNVAAERPQRGF 292 + ++ A + + GF Sbjct: 639 VTLDWAKPKGEGGF 652 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRA---YVGNL 523 ++ + +A+K +E +I GR +++ ++G R ER + S + + NL Sbjct: 433 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNL 492 Query: 522 PWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 + A + L ++F E V + G+S+G+ F+ AS ED A+++ + E++ Sbjct: 493 SYSATEETLQEVF----EKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIE 548 Query: 342 GRPLRVNVAAER 307 GR +R+ + R Sbjct: 549 GRTIRLELQGPR 560 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/133 (21%), Positives = 59/133 (44%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ +KA+E + G + + + R S+ R R + NL + Sbjct: 350 GYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK------NLSF 402 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L ++F + E+ + + G+S+G ++ S+ D + + G E+DGR Sbjct: 403 NITEDELKEVFEDALEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 457 Query: 336 PLRVNVAAERPQR 298 + + E+ QR Sbjct: 458 SVSLYYTGEKGQR 470 Score = 33.9 bits (76), Expect = 0.48 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 F ++GNL + L SE N V D TG +R FG+V S EDL+ A+ Sbjct: 307 FNLFIGNLNPNKSVAELKVAISEPF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 365 Query: 366 ALDGQEMDGRPLRV 325 L G ++ G +++ Sbjct: 366 -LTGLKVFGNEIKL 378
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 68.2 bits (165), Expect = 2e-11 Identities = 43/134 (32%), Positives = 69/134 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ ++ E+A +A+ + N+ +I GR + + RGS P + S +V L Sbjct: 528 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSED 583 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F V A IV DRETG S+GFGFV S+ED +A A++ E+DG Sbjct: 584 TTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 640 Query: 333 LRVNVAAERPQRGF 292 + ++ A + + GF Sbjct: 641 VTLDWAKPKGEGGF 654 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVE----RPPRQFASSFRAYVGN 526 ++ T +A+K E +I GR +++ ++G + + S + N Sbjct: 434 YIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSN 493 Query: 525 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM 346 L + A + L ++F E V + G+S+G+ F+ AS ED A+++ + +E+ Sbjct: 494 LSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 549 Query: 345 DGRPLRVNVAAER 307 +GR +R+ + R Sbjct: 550 EGRAIRLELQGPR 562 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/132 (21%), Positives = 59/132 (44%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ +KA+E + G + + + + S+ ER R + NLP+ Sbjct: 351 GYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAK------NLPY 403 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L ++F + E+ + + G+S+G ++ ++ D + G E+DGR Sbjct: 404 KVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 458 Query: 336 PLRVNVAAERPQ 301 + + E+ Q Sbjct: 459 SISLYYTGEKGQ 470 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/93 (26%), Positives = 43/93 (46%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 +AA + + + ++F +VGNL + L S+ N V D G + Sbjct: 289 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMT 347 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 R FG+V S EDL+ A+ L G ++ G +++ Sbjct: 348 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 379
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 68.2 bits (165), Expect = 2e-11 Identities = 43/134 (32%), Positives = 69/134 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ ++ E+A +A+ + N+ +I GR + + RGS P + S +V L Sbjct: 527 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSED 582 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F V A IV DRETG S+GFGFV S+ED +A A++ E+DG Sbjct: 583 TTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 639 Query: 333 LRVNVAAERPQRGF 292 + ++ A + + GF Sbjct: 640 VTLDWAKPKGEGGF 653 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVE----RPPRQFASSFRAYVGN 526 ++ T +A+K E +I GR +++ ++G + + S + N Sbjct: 433 YIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSN 492 Query: 525 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM 346 L + A + L ++F E V + G+S+G+ F+ AS ED A+++ + +E+ Sbjct: 493 LSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 548 Query: 345 DGRPLRVNVAAER 307 +GR +R+ + R Sbjct: 549 EGRAIRLELQGPR 561 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/132 (21%), Positives = 59/132 (44%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ +KA+E + G + + + + S+ ER R + NLP+ Sbjct: 350 GYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAK------NLPY 402 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L ++F + E+ + + G+S+G ++ ++ D + G E+DGR Sbjct: 403 KVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 457 Query: 336 PLRVNVAAERPQ 301 + + E+ Q Sbjct: 458 SISLYYTGEKGQ 469 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/93 (26%), Positives = 43/93 (46%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 +AA + + + ++F +VGNL + L S+ N V D G + Sbjct: 288 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMT 346 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 R FG+V S EDL+ A+ L G ++ G +++ Sbjct: 347 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 378
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 68.2 bits (165), Expect = 2e-11 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV + E A KA++ N + G+ L V RA ++ R E +++ Sbjct: 304 GFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQG 363 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 ++ NL + +D RL FS G + +A I+ D E G+S+GFGFV + E+ + A++ Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVT 422 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++ + + G+PL V +A + R Sbjct: 423 EMNQRMLAGKPLYVALAQRKEVR 445 Score = 62.4 bits (150), Expect = 1e-09 Identities = 37/133 (27%), Positives = 65/133 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++E A+ AIE N ++ + + V R R + A+ Y+ NL Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDT 270 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + + +F + GE+ + ++V D + + RGFGFV A+ E A+ L+ +E G+ Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGK 329 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 330 KLYVGRAQKKHER 342
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 68.2 bits (165), Expect = 2e-11 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV S +ADKAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 + Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 AEPITVKFANNPSQK 209 Score = 54.7 bits (130), Expect = 3e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NL +A++S L Q+F G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G + R L+V+ + + Sbjct: 347 GYRLGERVLQVSFKTSKQHK 366 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP +F G++ + +V D+ TG+S G+GFV + D D AI+ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 354 QEMDGRPLRVNVA 316 ++ + ++V+ A Sbjct: 103 LKLQTKTIKVSYA 115
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 68.2 bits (165), Expect = 2e-11 Identities = 43/134 (32%), Positives = 69/134 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ ++ E+A +A+ + N+ +I GR + + RGS P + S +V L Sbjct: 526 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSED 581 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F V A IV DRETG S+GFGFV S+ED +A A++ E+DG Sbjct: 582 TTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 638 Query: 333 LRVNVAAERPQRGF 292 + ++ A + + GF Sbjct: 639 VTLDWAKPKGEGGF 652 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVE----RPPRQFASSFRAYVGN 526 ++ T +A+K E +I GR +++ ++G + + S + N Sbjct: 432 YIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSN 491 Query: 525 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM 346 L + A + L ++F E V + G+S+G+ F+ AS ED A+++ + +E+ Sbjct: 492 LSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 547 Query: 345 DGRPLRVNVAAER 307 +GR +R+ + R Sbjct: 548 EGRAIRLELQGPR 560 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/132 (21%), Positives = 59/132 (44%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ +KA+E + G + + + + S+ ER R + NLP+ Sbjct: 349 GYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAK------NLPY 401 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L ++F + E+ + + G+S+G ++ ++ D + G E+DGR Sbjct: 402 KVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 456 Query: 336 PLRVNVAAERPQ 301 + + E+ Q Sbjct: 457 SISLYYTGEKGQ 468 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/93 (26%), Positives = 43/93 (46%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 +AA + + + ++F +VGNL + L S+ N V D G + Sbjct: 287 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMT 345 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 R FG+V S EDL+ A+ L G ++ G +++ Sbjct: 346 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 377
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 68.2 bits (165), Expect = 2e-11 Identities = 30/78 (38%), Positives = 51/78 (65%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L ++ + L Q F+++G + +V DRET RSRGFGFVT + +D A+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 363 LDGQEMDGRPLRVNVAAE 310 ++G+ +DGR +RV+ A + Sbjct: 66 MNGKSVDGRQIRVDQAGK 83
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 67.8 bits (164), Expect = 3e-11 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV S +ADKAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 + Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 AEPITVKFANNPSQK 209 Score = 54.7 bits (130), Expect = 3e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NL +A++S L Q+F G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G + R L+V+ + + Sbjct: 347 GYRLGERVLQVSFKTSKQHK 366 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP +F G++ + +V D+ TG+S G+GFV + D D AI+ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 354 QEMDGRPLRVNVA 316 ++ + ++V+ A Sbjct: 103 LKLQTKTIKVSYA 115
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 66.6 bits (161), Expect = 7e-11 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSR-------VERPPRQFASSFRA 538 GFV ++A +A+E+ N + + V RA ++ R E+ ++ A F++ Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS 317 Query: 537 ---YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 YV NL D +L ++FS G V ++ ++ D G S+G GFV A+ E+ A+S Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 L G+ ++ +PL V +A + R Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDR 399 Score = 63.5 bits (153), Expect = 6e-10 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASS----FRAYVG 529 GFV + E A KAIE N G LLN ++ G + R R ++ YV Sbjct: 167 GFVQYANEESAQKAIEKLN-----GMLLN-DKQVYVGPFLRRQERDSTANKTKFTNVYVK 220 Query: 528 NLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQE 349 NL D L F E+G++ +A ++ D E G+S+GFGFV + +D A+ +L+G + Sbjct: 221 NLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHK 279 Query: 348 MDGRPLRVNVAAERPQR 298 D + V A ++ +R Sbjct: 280 FDDKEWYVGRAQKKSER 296 Score = 51.2 bits (121), Expect = 3e-06 Identities = 34/133 (25%), Positives = 64/133 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + ++A +AI+ N + G+ + V + R V R + + ++ NL Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRV-MYSHRDPSVRR-----SGAGNIFIKNLDE 133 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L FS G +V+ + D +G+S+G+GFV A++E AI L+G ++ + Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192 Query: 336 PLRVNVAAERPQR 298 + V R +R Sbjct: 193 QVYVGPFLRRQER 205 Score = 51.2 bits (121), Expect = 3e-06 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + DS+L F + G VV + D T RS G+G+V + +D AI L+ Sbjct: 39 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98 Query: 357 GQEMDGRPLRVNVAAERP 304 + G+P+RV + P Sbjct: 99 YIPLYGKPIRVMYSHRDP 116
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 66.2 bits (160), Expect = 9e-11 Identities = 39/130 (30%), Positives = 67/130 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV +A A+ N I G+ + VN A S+ + ++ F +VG+L + Sbjct: 52 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ----KKDTSNHFHVFVGDLSPE 107 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + F+ G++ +A +V D TG+S+G+GFV+ +K D ++AI + GQ + GR Sbjct: 108 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 167 Query: 333 LRVNVAAERP 304 +R N A +P Sbjct: 168 IRTNWATRKP 177 Score = 35.0 bits (79), Expect = 0.22 Identities = 19/74 (25%), Positives = 42/74 (56%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVGNL + ++Q+FS+ G + ++ + + + + FV D +A++A++ Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 69 Query: 357 GQEMDGRPLRVNVA 316 G+++ G+ ++VN A Sbjct: 70 GRKILGKEVKVNWA 83
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 66.2 bits (160), Expect = 9e-11 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + ++ L FS G + +V DRET RSRGFGF+T + E A+ A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 363 LDGQEMDGRPLRVNVAAE--RPQRG 295 ++G+ +DGR +RV+ A + R RG Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRG 91
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 66.2 bits (160), Expect = 9e-11 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASS---------- 547 GFV + E A A+E N + +L V RA ++ R E R+F Sbjct: 268 GFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQG 327 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L +MFSE+G V + ++ + + G SRGFGFV ++ E+ A+ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK 386 Query: 366 ALDGQEMDGRPLRVNVAAERPQR 298 ++G+ + +PL V +A + +R Sbjct: 387 EMNGKMIGRKPLYVALAQRKEER 409 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/132 (23%), Positives = 61/132 (46%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V + E+A +A+E+ N I R + + + + P + + ++ NL Sbjct: 89 YVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRD------PSTRLSGKGNVFIKNLDAS 142 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ L + FS G +++ + D GRS+G+GFV +E +AI L+G ++ + Sbjct: 143 IDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQ 201 Query: 333 LRVNVAAERPQR 298 + V R R Sbjct: 202 VFVGHFVRRQDR 213
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 66.2 bits (160), Expect = 9e-11 Identities = 39/130 (30%), Positives = 67/130 (51%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV +A A+ N I G+ + VN A S+ + ++ F +VG+L + Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ----KKDTSNHFHVFVGDLSPE 124 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + F+ G++ +A +V D TG+S+G+GFV+ +K D ++AI + GQ + GR Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184 Query: 333 LRVNVAAERP 304 +R N A +P Sbjct: 185 IRTNWATRKP 194 Score = 33.5 bits (75), Expect = 0.63 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD----RETGRSRGFG-----------FVT 403 YVGNL + ++Q+FS+ G + ++ + R S GF FV Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 71 Query: 402 MASKEDLDSAISALDGQEMDGRPLRVNVA 316 D +A++A++G+++ G+ ++VN A Sbjct: 72 FYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 65.9 bits (159), Expect = 1e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 90 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 141 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 201 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 202 TEPITVKFANNPSQK 216 Score = 52.8 bits (125), Expect = 1e-06 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAERPQR 298 + AI++L+G + R L+V+ + + Sbjct: 350 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 110 LRLQTKTIKVSYA 122
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 65.9 bits (159), Expect = 1e-10 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 S + Y+G L ++ L FS V A ++ ++ TGRSRG+GFV S++ +SAI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 369 SALDGQEMDGRPLRVNVAAERP 304 SA++GQE++G + VNVA + P Sbjct: 90 SAMNGQELNGFNISVNVAKDWP 111
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 65.9 bits (159), Expect = 1e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 TEPITVKFANNPSQK 209 Score = 52.8 bits (125), Expect = 1e-06 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 342 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAERPQR 298 + AI++L+G + R L+V+ + + Sbjct: 343 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 65.9 bits (159), Expect = 1e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 95 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 146 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 206 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 207 TEPITVKFANNPSQK 221 Score = 52.8 bits (125), Expect = 1e-06 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 354 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAERPQR 298 + AI++L+G + R L+V+ + + Sbjct: 355 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 115 LRLQTKTIKVSYA 127
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 65.5 bits (158), Expect = 2e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 TEPITVKFANNPSQK 209 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 280 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G + R L+V+ + + Sbjct: 340 GYRLGDRVLQVSFKTNKTHK 359 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 65.5 bits (158), Expect = 2e-10 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L + ++ L FS G + +V DRET RSRGFGF+T + E A+ A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 363 LDGQEMDGRPLRVNVAAE--RPQRGF*CGA 280 ++G+ +DGR +RV+ A + R RG GA Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGA 96
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 65.5 bits (158), Expect = 2e-10 Identities = 34/100 (34%), Positives = 55/100 (55%) Frame = -2 Query: 606 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 427 NRAA + +++ A R YVG+L + + L +F G + + ++ D ETGR Sbjct: 233 NRAAAMANNLQKGS---AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289 Query: 426 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 S+G+GF+T + E A+ L+G E+ GRP++V ER Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 33.1 bits (74), Expect = 0.83 Identities = 20/51 (39%), Positives = 27/51 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF 544 GF+T S E A KA+E N ++++GR + V G ER ASSF Sbjct: 294 GFITFSDSECAKKALEQLNGFELAGRPMKV------GHVTERTDASSASSF 338
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 65.5 bits (158), Expect = 2e-10 Identities = 34/100 (34%), Positives = 55/100 (55%) Frame = -2 Query: 606 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 427 NRAA + +++ A R YVG+L + + L +F G + + ++ D ETGR Sbjct: 233 NRAAAMANNLQKGS---AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289 Query: 426 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 S+G+GF+T + E A+ L+G E+ GRP++V ER Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 33.1 bits (74), Expect = 0.83 Identities = 20/51 (39%), Positives = 27/51 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF 544 GF+T S E A KA+E N ++++GR + V G ER ASSF Sbjct: 294 GFITFSDSECAKKALEQLNGFELAGRPMKV------GHVTERTDASSASSF 338
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 65.5 bits (158), Expect = 2e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 TEPITVKFANNPSQK 209 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G + R L+V+ + + Sbjct: 339 GYRLGDRVLQVSFKTNKTHK 358 Score = 47.0 bits (110), Expect = 6e-05 Identities = 22/70 (31%), Positives = 38/70 (54%) Frame = -2 Query: 525 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM 346 LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 345 DGRPLRVNVA 316 + ++V+ A Sbjct: 106 QTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 65.5 bits (158), Expect = 2e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 TEPITVKFANNPSQK 209 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G + R L+V+ + + Sbjct: 339 GYRLGDRVLQVSFKTNKTHK 358 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 65.5 bits (158), Expect = 2e-10 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV ++A+KAI T N + + + V+ A RP YV LP Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------RPSSASIRDANLYVSGLPK 134 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 L Q+FS++G ++ + I+ D+ TG SRG GF+ + + + AI L+GQ+ G Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 339 -RPLRVNVAAERPQR 298 P+ V A Q+ Sbjct: 195 TEPITVKFANNPSQK 209 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G + R L+V+ + + Sbjct: 339 GYRLGDRVLQVSFKTNKTHK 358 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 65.1 bits (157), Expect = 2e-10 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T ++A++AI T N + + + V+ A RP + Y+ LP Sbjct: 64 GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPR 115 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 + MFS G ++N+ ++ D+ TG SRG F+ + + + AI++ +G + G Sbjct: 116 TMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGS 175 Query: 339 -RPLRVNVAAERPQ 301 P+ V AA Q Sbjct: 176 SEPITVKFAANPNQ 189 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/90 (31%), Positives = 49/90 (54%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P +S + ++ NL A++ L QMF G V N ++ D T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAERPQR 298 + AI++L+G + + L+V+ + + Sbjct: 297 EAAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 49.7 bits (117), Expect = 9e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP L +FS GEV +A ++ D+ G S G+GFV + +D + AI+ L+G Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 84 LRLQSKTIKVSYA 96 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVN 604 GFVTM+ EEA AI + N Y + ++L V+ Sbjct: 288 GFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 65.1 bits (157), Expect = 2e-10 Identities = 45/142 (31%), Positives = 73/142 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF ++ + A + N+ + G+ + VNRA+Q +R + +VGNL Sbjct: 55 GFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQ-----DRGVNTLIGA-NLFVGNLDP 108 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 ++ L FS G++V A V E GRS+G+GFV+ S E D+AI A++ Q + + Sbjct: 109 LVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNK 168 Query: 336 PLRVNVAAERPQRGF*CGAAAE 271 P+ V+ A +R +G G AE Sbjct: 169 PITVSYAFKREGKGERHGDIAE 190 Score = 51.2 bits (121), Expect = 3e-06 Identities = 27/76 (35%), Positives = 43/76 (56%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 Y+GNL + DS L ++ + G VVN I DR GFGF ++D++ A L+ Sbjct: 14 YLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73 Query: 357 GQEMDGRPLRVNVAAE 310 ++ G+P+RVN A++ Sbjct: 74 QVKLFGKPIRVNRASQ 89
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 64.7 bits (156), Expect = 3e-10 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV ++ +A AI+T N + + L V+ A RP + YV NLP Sbjct: 147 FVDFASEIDAQNAIKTVNGITVRNKRLKVSYA--------RPGGESIKDTNLYVTNLPRT 198 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG-- 340 D L ++F ++G +V I+ D+ TGR RG FV +E+ AISAL+ +G Sbjct: 199 ITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGAS 258 Query: 339 RPLRVNVAAE 310 +PL V +A E Sbjct: 259 QPLTVRLAEE 268
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 64.3 bits (155), Expect = 3e-10 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASS-------FRAY 535 FV A A+ N I G+ + VN A S+ + S F + Sbjct: 50 FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVF 109 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 VG+L Q + F+ G + +A +V D TG+S+G+GFV+ +K D ++AI + G Sbjct: 110 VGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169 Query: 354 QEMDGRPLRVNVAAERP 304 Q + GR +R N A +P Sbjct: 170 QWLGGRQIRTNWATRKP 186 Score = 38.9 bits (89), Expect = 0.015 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVGNL ++ ++Q+FS+ G N ++ D T + + FV +A++A++ Sbjct: 10 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 357 GQEMDGRPLRVNVA 316 G+++ G+ ++VN A Sbjct: 68 GRKIMGKEVKVNWA 81
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 63.9 bits (154), Expect = 4e-10 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQF----------ASSF 544 FV E+A +A ET N + L V RA ++ R + QF A Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS 304 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 YV N+ + L + FS+ G + + ++ D E G+S+GFGFV ++ E+ A+ Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKT 363 Query: 363 LDGQEMDGRPLRVNVAAERPQR 298 GQ G+PL V +A ++ R Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDR 385 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/133 (24%), Positives = 62/133 (46%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+ + ++A+ AIE N ++G+++ V + V P + +V NLP Sbjct: 68 GYANFLSRQDANLAIEKKNNSLLNGKMIRVMWS------VRAPDARRNGVGNVFVKNLPE 121 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 ++ L MF + G +V+ + E G+SRG+GFV ++ +AI L+ + + Sbjct: 122 SVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180 Query: 336 PLRVNVAAERPQR 298 + V ++ R Sbjct: 181 EIYVGKFMKKTDR 193 Score = 38.9 bits (89), Expect = 0.015 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L F+E + + + D +GRS +G+ S++D + AI + Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86 Query: 357 GQEMDGRPLRVNVAAERP 304 ++G+ +RV + P Sbjct: 87 NSLLNGKMIRVMWSVRAP 104
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 63.5 bits (153), Expect = 6e-10 Identities = 31/83 (37%), Positives = 48/83 (57%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R YVG+L + + L +F G++ N ++ D +TGRS+G+GF+T + E A+ Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 L+G E+ GRP+RV ER G Sbjct: 324 LNGFELAGRPMRVGHVTERLDGG 346 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQR 589 GF+T S E A +A+E N ++++GR + V +R Sbjct: 307 GFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 63.5 bits (153), Expect = 6e-10 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T ++A++AI T N + + + V+ A RP + Y+ LP Sbjct: 64 GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPR 115 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG- 340 + MFS G ++N+ ++ D+ TG SRG F+ + + + AI++ G + G Sbjct: 116 TMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGS 175 Query: 339 -RPLRVNVAAERPQ 301 P+ V AA Q Sbjct: 176 SEPITVKFAANPNQ 189 Score = 55.5 bits (132), Expect = 2e-07 Identities = 28/90 (31%), Positives = 49/90 (54%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P +S + ++ NL A++ L QMF G V N ++ D T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAERPQR 298 + AI++L+G + + L+V+ + + Sbjct: 297 ESAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 50.8 bits (120), Expect = 4e-06 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V LP L +FS GEV +A ++ D+ G S G+GFV + +D + AIS L+G Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Query: 354 QEMDGRPLRVNVA 316 + + ++V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 63.5 bits (153), Expect = 6e-10 Identities = 43/134 (32%), Positives = 68/134 (50%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ ++ E+A +A+ + N+ +I GR + R +GS P S +V L Sbjct: 527 FIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGSNSRSQP-----SKTLFVKGLSED 578 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F V A IV DRETG S+GFGFV S+ED +A A++ E+DG Sbjct: 579 TTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 635 Query: 333 LRVNVAAERPQRGF 292 + ++ A + + GF Sbjct: 636 VTLDWAKPKGEGGF 649 Score = 43.1 bits (100), Expect = 8e-04 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 5/180 (2%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ +KA+E + G + + + R S+ R R + NL + Sbjct: 351 GYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK------NLSF 403 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L ++F + E+ + + G+S+G ++ S+ D + + G E+DGR Sbjct: 404 NITEDELKEVFEDAMEIRLVS-----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 458 Query: 336 PLRVNVAAERPQRGF*CGA----AAESMAWRFS-WTHGNTAEMLLQKTEACHHLKLPH*P 172 + + E+ QR G + ES S ++ T E L + E +K+P P Sbjct: 459 SVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNP 518 Score = 33.1 bits (74), Expect = 0.83 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 F ++GNL + L SE N V D TG +R FG+V S EDL+ A+ Sbjct: 308 FNLFIGNLNPNKSVNELKFAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 366 Query: 366 ALDGQEMDGRPLRV 325 L G ++ G +++ Sbjct: 367 -LTGLKVFGNEIKL 379
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASS-------FRAY 535 FV A A+ N I G+ + VN A S+ + S F + Sbjct: 50 FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVF 109 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 VG+L + + F+ G + +A +V D TG+S+G+GFV+ +K D ++AI + G Sbjct: 110 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169 Query: 354 QEMDGRPLRVNVAAERP 304 Q + GR +R N A +P Sbjct: 170 QWLGGRQIRTNWATRKP 186 Score = 38.9 bits (89), Expect = 0.015 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVGNL ++ ++Q+FS+ G N ++ D T + + FV +A++A++ Sbjct: 10 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 357 GQEMDGRPLRVNVA 316 G+++ G+ ++VN A Sbjct: 68 GRKIMGKEVKVNWA 81
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 63.2 bits (152), Expect = 7e-10 Identities = 36/108 (33%), Positives = 56/108 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S +EEAD A+ + + + G + + RA R P A + +VG L Sbjct: 51 GFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSREDSAR--PGAHAKVKKLFVGGLKG 107 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 + L++ FS+ G V A I+ D+++G+ RGFGFV + + D A Sbjct: 108 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 44.7 bits (104), Expect = 3e-04 Identities = 25/79 (31%), Positives = 43/79 (54%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L Q +S L F G + + +V + +T RSR FGFVT ++ E+ D+A++A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 363 LDGQEMDGRPLRVNVAAER 307 +DG + + A R Sbjct: 68 -SPHAVDGNTVELKRAVSR 85
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 62.4 bits (150), Expect = 1e-09 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV ++ +A AI++ N + + L V+ A RP + YV NLP Sbjct: 130 FVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA--------RPGGESIKDTNLYVTNLPRT 181 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG-- 340 D L ++F ++G +V I+ D+ TG+ RG FV +E+ AISAL+ +G Sbjct: 182 ITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGAS 241 Query: 339 RPLRVNVAAE 310 +PL V +A E Sbjct: 242 QPLTVRLAEE 251
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 62.0 bits (149), Expect = 2e-09 Identities = 33/109 (30%), Positives = 57/109 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S + E D A+ + I GR++ RA R + P + + +VG + Sbjct: 53 GFVTFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKE 109 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L + F E+G++ + I+ D+++G+ RGFGFVT + +D + Sbjct: 110 DTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 +ER QF F +G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTF 57 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 301 + ++D+A+SA +DGR + A R + Sbjct: 58 SCMNEVDAAMSARP-HTIDGRVVEPKRAVAREE 89
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 62.0 bits (149), Expect = 2e-09 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV ++ ++ +AI+ N + + L V+ A RP + YV NLP Sbjct: 172 FVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA--------RPGGESIKDTNLYVTNLPRT 223 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG-- 340 D +L +F ++G +V I+ D+ TGR RG FV +E+ AISAL+ +G Sbjct: 224 ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS 283 Query: 339 RPLRVNVAAE 310 +PL V +A E Sbjct: 284 QPLSVRLAQE 293
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 62.0 bits (149), Expect = 2e-09 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV ++ ++ +AI+ N + + L V+ A RP + YV NLP Sbjct: 170 FVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA--------RPGGESIKDTNLYVTNLPRT 221 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG-- 340 D +L +F ++G +V I+ D+ TGR RG FV +E+ AISAL+ +G Sbjct: 222 ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS 281 Query: 339 RPLRVNVAAE 310 +PL V +A E Sbjct: 282 QPLSVRLAEE 291
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 61.2 bits (147), Expect = 3e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVA 316 K D + A+ A+DG +DGR LRV +A Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMA 90
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 61.2 bits (147), Expect = 3e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVA 316 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 61.2 bits (147), Expect = 3e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVA 316 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 61.2 bits (147), Expect = 3e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVA 316 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 61.2 bits (147), Expect = 3e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -2 Query: 573 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 394 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVA 316 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 61.2 bits (147), Expect = 3e-09 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV T E A KA+ + I G++L V RA ++ R+ R+F Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ Sbjct: 302 VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVD 359 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+ + +PL V + R Sbjct: 360 EMNGRVVGSKPLHVTLGQAR 379 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPW 517 +V ++ A++AI N ++ R + V R R E R A+ +V N+ Sbjct: 149 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D +L ++F E+G + ++ D +G+S+GFGFV + E A+ L G+ +DG+ Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 268 VLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 357 GQEMDGRPLRV 325 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 60.8 bits (146), Expect = 4e-09 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FV + ++ +AI++ N + + L V+ A RP + YV NLP Sbjct: 155 FVDFAAETDSQRAIKSLNGITVRNKRLKVSYA--------RPGGESIKDTNLYVTNLPRT 206 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG-- 340 D +L +F ++G +V I+ D+ TG+ RG FV +E+ AISAL+ +G Sbjct: 207 ITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGAS 266 Query: 339 RPLRVNVAAE 310 +PL V +A E Sbjct: 267 QPLTVRLAEE 276
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.8 bits (146), Expect = 4e-09 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV T E A KA+ + I G++L V RA ++ R+ R+F Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ Sbjct: 302 VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVD 359 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+ + +PL V + R Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPW 517 +V ++ A++AI N ++ R + V R R E R A+ +V N+ Sbjct: 149 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D +L ++F E+G + ++ D +G+S+GFGFV + E A+ L G+ +DG+ Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 268 VLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 357 GQEMDGRPLRV 325 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.8 bits (146), Expect = 4e-09 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV T E A KA+ + I G++L V RA ++ R+ R+F Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ Sbjct: 302 VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVD 359 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+ + +PL V + R Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPW 517 +V ++ A++AI N ++ R + V R R E R A+ +V N+ Sbjct: 149 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D +L ++F E+G + ++ D +G+S+GFGFV + E A+ L G+ +DG+ Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 268 VLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 357 GQEMDGRPLRV 325 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.8 bits (146), Expect = 4e-09 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV T E A KA+ + I G++L V RA ++ R+ R+F Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ Sbjct: 302 VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVD 359 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+ + +PL V + R Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPW 517 +V ++ A++AI N ++ R + V R R E R A+ +V N+ Sbjct: 149 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D +L ++F E+G + ++ D +G+S+GFGFV + E A+ L G+ +DG+ Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 268 VLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 357 GQEMDGRPLRV 325 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.8 bits (146), Expect = 4e-09 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV T E A KA+ + I G++L V RA ++ R+ R+F Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ Sbjct: 302 VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVD 359 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+ + +PL V + R Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPW 517 +V ++ A++AI N ++ R + V R R E R A+ +V N+ Sbjct: 149 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D +L ++F E+G + ++ D +G+S+GFGFV + E A+ L G+ +DG+ Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 268 VLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 357 GQEMDGRPLRV 325 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.8 bits (146), Expect = 4e-09 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS----------S 547 GFV T E A KA+ + I G++L V RA ++ R+ R+F Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ Sbjct: 302 VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVD 359 Query: 366 ALDGQEMDGRPLRVNVAAER 307 ++G+ + +PL V + R Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379 Score = 55.1 bits (131), Expect = 2e-07 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRV-ERPPRQFASSFRAYVGNLPW 517 +V ++ A++AI N ++ R + V R R E R A+ +V N+ Sbjct: 149 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGD 208 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +D +L ++F E+G + ++ D +G+S+GFGFV + E A+ L G+ +DG+ Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 336 PLRVNVAAERPQR 298 L V A ++ +R Sbjct: 268 VLYVGRAQKKIER 280 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 357 GQEMDGRPLRV 325 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 60.5 bits (145), Expect = 5e-09 Identities = 33/109 (30%), Positives = 57/109 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S + E D A+ T + I GR++ RA R + P + + +VG + Sbjct: 53 GFVTFSCMNEVDAAMAT-RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKE 109 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L + F E+G++ + I+ D+++G+ RGF FVT + +D + Sbjct: 110 DTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 45.4 bits (106), Expect = 2e-04 Identities = 27/93 (29%), Positives = 47/93 (50%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 +ER QF F +G L ++ + L + + G + + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTF 57 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 301 + ++D+A+ A +DGR + A R + Sbjct: 58 SCMNEVDAAM-ATRPHTIDGRVVEPKRAVAREE 89
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 60.5 bits (145), Expect = 5e-09 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG LP+ D+ L + F G++ A ++ DR+TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 363 LDGQEMDGRPLRVNVA 316 +DGR VN+A Sbjct: 93 -PNPIIDGRKANVNLA 107
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 60.5 bits (145), Expect = 5e-09 Identities = 34/109 (31%), Positives = 56/109 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S++ E D A+ + I GR++ RA R + P + + +VG + Sbjct: 53 GFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGK--PGAHVTVKKLFVGGIKE 109 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F E+G++ I+ DR++G+ RGFGFVT + +D + Sbjct: 110 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 51.2 bits (121), Expect = 3e-06 Identities = 29/95 (30%), Positives = 51/95 (53%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 +ER QF F +G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 57 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 295 +S ++D+A++A +DGR + A R + G Sbjct: 58 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 91
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 60.5 bits (145), Expect = 5e-09 Identities = 34/109 (31%), Positives = 56/109 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S++ E D A+ + I GR++ RA R + P + + +VG + Sbjct: 65 GFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGK--PGAHVTVKKLFVGGIKE 121 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F E+G++ I+ DR++G+ RGFGFVT + +D + Sbjct: 122 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/95 (28%), Positives = 52/95 (54%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 +ER R+ + ++G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 295 +S ++D+A++A +DGR + A R + G Sbjct: 70 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 103
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 60.1 bits (144), Expect = 6e-09 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV M T ++ AI+ N Y ++ + V A R R P + + +VGNL Sbjct: 43 GFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSR-----RAPN--TPTTKIFVGNLTD 95 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + + ++F ++G VV IV R +GFV + D+ AI L+G+ +DG+ Sbjct: 96 KTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQ 147 Query: 336 PLRVNVAAER---------PQRGF*CG 283 PL+V V+ R P++ + CG Sbjct: 148 PLKVQVSTSRVRPKPGMGDPEQCYRCG 174
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 60.1 bits (144), Expect = 6e-09 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Frame = -2 Query: 672 EEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF----RAYVGNLPWQAED 505 + AD + +T +SG + AA + + P + S R +V N+P++ D Sbjct: 75 QSADTSAQT-----VSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRD 129 Query: 504 SRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 L QMF + G++++ I+++ E G S+GFGFVT + D D A L G ++GR + V Sbjct: 130 PDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187 Query: 324 NVAAER 307 N A R Sbjct: 188 NNATAR 193
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 59.7 bits (143), Expect = 8e-09 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ S+ E+A A+++ N +I GR + + +Q G A S +V L Sbjct: 454 FIEFSSAEDAKDAMDSCNNTEIEGRSIRLE-FSQGGGPQGGGRGGSAQSKTLFVRGLSED 512 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 + L + F VNA IV DR+TG S+GFGFV ++ ED +A A++ E+DG Sbjct: 513 TTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNK 569 Query: 333 LRVNVAAER--PQRG 295 + ++ A + QRG Sbjct: 570 VTLDFAKPKGDSQRG 584 Score = 53.5 bits (127), Expect = 6e-07 Identities = 36/142 (25%), Positives = 67/142 (47%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V S +EA+KA+E +I GR + V+ ++ S V NL + Sbjct: 365 YVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYS 424 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 A + L ++F + +I + GR++GF F+ +S ED A+ + + E++GR Sbjct: 425 ATEDSLREVFEKA-----TSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRS 479 Query: 333 LRVNVAAERPQRGF*CGAAAES 268 +R+ + +G G +A+S Sbjct: 480 IRLEFSQGGGPQGGGRGGSAQS 501
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG LP+ D+ L + F G++ A ++ DR+TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 363 LDGQEMDGRPLRVNVA 316 +DGR VN+A Sbjct: 72 -PNPIIDGRKANVNLA 86
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 58.9 bits (141), Expect = 1e-08 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Frame = -2 Query: 687 TMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSF----RAYVGNLP 520 T S AD + +T +SG + AA + + P + + R +V N+P Sbjct: 71 THSEQSPADTSAQT-----VSGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIP 125 Query: 519 WQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 340 ++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A L G ++G Sbjct: 126 FRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREKLHGTVVEG 183 Query: 339 RPLRVNVAAER 307 R + VN A R Sbjct: 184 RKIEVNNATAR 194
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 58.9 bits (141), Expect = 1e-08 Identities = 25/78 (32%), Positives = 46/78 (58%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT+ S D A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 363 LDGQEMDGRPLRVNVAAE 310 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 58.5 bits (140), Expect = 2e-08 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT S D A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 363 LDGQEMDGRPLRVNVAAE 310 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 58.5 bits (140), Expect = 2e-08 Identities = 32/109 (29%), Positives = 56/109 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S +EE D A+ + + GR++ RA R V+ P + + +VG + Sbjct: 79 GFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKE 135 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ ++ DR++G+ RGF FVT + +D + Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 R +R P++ + ++G L ++ D L + F + G + + ++ D +T RS Sbjct: 16 RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 RGFGFVT + E++D+A+ A ++DGR + A R Sbjct: 76 RGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSR 113
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 58.5 bits (140), Expect = 2e-08 Identities = 32/109 (29%), Positives = 56/109 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S +EE D A+ + + GR++ RA R V+ P + + +VG + Sbjct: 79 GFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKE 135 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ ++ DR++G+ RGF FVT + +D + Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 R +R P++ + ++G L ++ D L + F + G + + ++ D +T RS Sbjct: 16 RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 RGFGFVT + E++D+A+ A ++DGR + A R Sbjct: 76 RGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSR 113
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 58.5 bits (140), Expect = 2e-08 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Frame = -2 Query: 606 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 427 NR GSR P F L + L ++FS +G + +VYD+ TGR Sbjct: 102 NRRRHTGSRANPDPNTCLGVF-----GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGR 156 Query: 426 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 268 SRGF FV +D A+ +G E+DGR +RV+ + A P G G S Sbjct: 157 SRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 213
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 58.5 bits (140), Expect = 2e-08 Identities = 32/109 (29%), Positives = 56/109 (51%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S +EE D A+ + + GR++ RA R V+ P + + +VG + Sbjct: 79 GFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKE 135 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ ++ DR++G+ RGF FVT + +D + Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 R +R P++ + ++G L ++ D L + F + G + + ++ D +T RS Sbjct: 16 RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 RGFGFVT + E++D+A+ A ++DGR + A R Sbjct: 76 RGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSR 113
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 58.5 bits (140), Expect = 2e-08 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Frame = -2 Query: 606 NRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 427 NR GSR P F L + L ++FS +G + +VYD+ TGR Sbjct: 104 NRRRHTGSRANPDPNTCLGVF-----GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGR 158 Query: 426 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 268 SRGF FV +D A+ +G E+DGR +RV+ + A P G G S Sbjct: 159 SRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 215
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 58.2 bits (139), Expect = 2e-08 Identities = 25/80 (31%), Positives = 50/80 (62%) Frame = -2 Query: 561 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 382 ++ S +VG LP++ + ++ +FS++GE+VN +V D++TG+S+GF F+ + Sbjct: 31 EYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 381 DSAISALDGQEMDGRPLRVN 322 A+ +G ++ GR +RV+ Sbjct: 91 VLAVDNFNGIKIKGRTIRVD 110
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 57.8 bits (138), Expect = 3e-08 Identities = 33/109 (30%), Positives = 55/109 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT +T+EE D A+ + + GR++ RA R +RP + +VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDS-QRPGAHLTVK-KIFVGGIKE 113 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 8e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 57.8 bits (138), Expect = 3e-08 Identities = 33/109 (30%), Positives = 55/109 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT +T+EE D A+ + + GR++ RA R +RP + +VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDS-QRPGAHLTVK-KIFVGGIKE 113 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 8e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/79 (39%), Positives = 48/79 (60%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R +V N+P++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREK 179 Query: 363 LDGQEMDGRPLRVNVAAER 307 L G ++GR + VN A R Sbjct: 180 LHGTVVEGRKIEVNNATAR 198
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 57.8 bits (138), Expect = 3e-08 Identities = 33/109 (30%), Positives = 55/109 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT +T+EE D A+ + + GR++ RA R +RP + +VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDS-QRPGAHLTVK-KIFVGGIKE 113 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 8e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 57.8 bits (138), Expect = 3e-08 Identities = 33/109 (30%), Positives = 55/109 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT +T+EE D A+ + + GR++ RA R +RP + +VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDS-QRPGAHLTVK-KIFVGGIKE 113 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.1 bits (126), Expect = 8e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 57.4 bits (137), Expect = 4e-08 Identities = 24/80 (30%), Positives = 50/80 (62%) Frame = -2 Query: 561 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 382 ++ S ++G LP++ + ++ +FS++GE+VN +V D++TG+S+GF F+ + Sbjct: 31 EYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 381 DSAISALDGQEMDGRPLRVN 322 A+ +G ++ GR +RV+ Sbjct: 91 ILAVDNFNGIKIKGRTIRVD 110
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 57.4 bits (137), Expect = 4e-08 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAA---QRGSRVERPPRQFASSFRAYVGNL 523 FV T E+A +A+ + N +I GR + + ++ Q+G+ R S +V L Sbjct: 502 FVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK-TLFVRGL 560 Query: 522 PWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 + L + F ++A IV DR+TG S+GFGFV +S ED +A A++ E+D Sbjct: 561 SEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 617 Query: 342 GRPLRVNVAAERP--QRG 295 G + ++ A + QRG Sbjct: 618 GNKVTLDFAKPKGEFQRG 635 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/133 (21%), Positives = 63/133 (47%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 ++ T EA+KA+E ++ GR + ++ ++ + + S V NL + Sbjct: 412 YIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYA 471 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 A + L ++F + + + GR +G+ FV + ED A+++ + E++GR Sbjct: 472 ASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRA 527 Query: 333 LRVNVAAERPQRG 295 +R+ ++ Q+G Sbjct: 528 IRLEFSSPSWQKG 540 Score = 49.7 bits (117), Expect = 9e-06 Identities = 32/133 (24%), Positives = 67/133 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 G+V + E+ DKA++ N + G + + +A + S E + A + +V NLP+ Sbjct: 324 GYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTL--FVKNLPY 380 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + + + +F EV +V ++E G S+G ++ ++ + + A+ G E+DGR Sbjct: 381 RVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGR 436 Query: 336 PLRVNVAAERPQR 298 + ++ E+ Q+ Sbjct: 437 AMVIDYTGEKSQQ 449 Score = 32.0 bits (71), Expect = 1.8 Identities = 24/83 (28%), Positives = 40/83 (48%) Frame = -2 Query: 555 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 376 AS+F +V NL + L E N + R G S+ FG+V S ED+D Sbjct: 278 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVR-IGSSKRFGYVDFLSAEDMDK 336 Query: 375 AISALDGQEMDGRPLRVNVAAER 307 A+ L+G+++ G +++ A + Sbjct: 337 ALQ-LNGKKLMGLEIKLEKAKSK 358
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 57.4 bits (137), Expect = 4e-08 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS- 367 + +VG L W+ L + F G++++ ++ + E+GRSRGFGFVT A +++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 366 ---ALDGQEMDGRPLRVNVAAERPQRG 295 LDG+ +D +P ++P++G Sbjct: 68 GPHTLDGRTIDPKPCNPR-TLQKPKKG 93 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/106 (23%), Positives = 54/106 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT + + ++ + + GR ++ R +++P + ++ ++G LP Sbjct: 51 GFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPR--TLQKPKK--GGGYKVFLGGLPS 105 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 379 ++ L F+ +G+V I+YD+E +SRGFGF++ + ++ Sbjct: 106 NVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 57.0 bits (136), Expect = 5e-08 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGR--LLNVNRAA----QRGSRVERPPRQFASSFRAYV 532 FV S+ A++A+ +N I G +N A Q + V R P F +V Sbjct: 132 FVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPE-----FSIFV 186 Query: 531 GNLPWQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 G+L EDS L F S + +A I+ D TG SR +GFV +S+++ A+ + G Sbjct: 187 GDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246 Query: 354 QEMDGRPLRVNVAAER 307 GRPLR++VA+ + Sbjct: 247 YLCQGRPLRISVASPK 262
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 57.0 bits (136), Expect = 5e-08 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Frame = -2 Query: 672 EEADKAIETFNRYDISGRLLNVNRA--AQRGSRVERPPRQFASSFRAYVGNLPWQAEDSR 499 E KA E N++ +SGR L V + R + + S+ +V NL ++ + Sbjct: 121 ESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGST--VFVANLDYKVGWKK 178 Query: 498 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 L ++FS G VV A I+ D++ G+SRG G VT + AIS +GQ + RP+ V + Sbjct: 179 LKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 237 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = -2 Query: 612 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRE 436 N+ R R P +++ RA++ N+P+ + L + E GEV ++ D E Sbjct: 51 NIKRGGNRFEPYANPTKRY----RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE 106 Query: 435 TGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 G+SRG V +E + A L+ + GRPL+V Sbjct: 107 -GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Score = 39.7 bits (91), Expect = 0.009 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 615 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 672 Query: 357 GQEMDGRPLRVNV 319 G ++ GR + V + Sbjct: 673 GMKLSGREIDVRI 685
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 57.0 bits (136), Expect = 5e-08 Identities = 39/130 (30%), Positives = 59/130 (45%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV M + EAD+AI+ + Y ++G +NV + + +S + +VGN+ Sbjct: 38 GFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPK----------TSTKLHVGNISS 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G VV IV D + FV M ED AIS LD G+ Sbjct: 88 SCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISGLDNTAFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 LMSVKLSTSR 149 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/81 (28%), Positives = 40/81 (49%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VGNL + +FS++G++ IV + FGFV M SK + D AI Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 363 LDGQEMDGRPLRVNVAAERPQ 301 L ++G + V ++ +P+ Sbjct: 55 LHHYMLNGMAMNVEMSKGKPK 75
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.6 bits (135), Expect = 7e-08 Identities = 24/78 (30%), Positives = 44/78 (56%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT S D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 363 LDGQEMDGRPLRVNVAAE 310 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 56.2 bits (134), Expect = 9e-08 Identities = 34/85 (40%), Positives = 51/85 (60%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 F A+VGNL + ++ L F E V + +V D T RSRGFG+V + + L +A+ Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150 Query: 366 ALDGQEMDGRPLRVNVAAERPQRGF 292 AL G+++ GRP+R+ VA P+R F Sbjct: 151 ALSGEDLMGRPVRITVA--EPRRSF 173
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 55.8 bits (133), Expect = 1e-07 Identities = 39/123 (31%), Positives = 61/123 (49%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V A KA++ G + V+ A++ SR +R +VGNLP++ Sbjct: 251 YVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS---------VFVGNLPYK 301 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 EDS L + F + G +V IV + TG RGFG+V + + + A+ L+ E+ GR Sbjct: 302 IEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRK 360 Query: 333 LRV 325 LRV Sbjct: 361 LRV 363
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 55.5 bits (132), Expect = 2e-07 Identities = 32/109 (29%), Positives = 54/109 (49%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT +T+E+ D A+ + + GR++ RA R +RP + +VG + Sbjct: 57 GFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSREDS-QRPGAHLTVK-KIFVGGIKE 113 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F ++G++ I+ DR +G+ RGF FVT +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162 Score = 52.0 bits (123), Expect = 2e-06 Identities = 28/87 (32%), Positives = 48/87 (55%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 +D+A++A ++DGR + A R Sbjct: 66 KVDAAMNARP-HKVDGRVVEPKRAVSR 91
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 55.5 bits (132), Expect = 2e-07 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 363 ----LDGQEMDGRPLR---VNVAAERPQRGF*CGAAAES 268 LDG+ +D +P + RP+ G+ G ++S Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDS 109 Score = 53.9 bits (128), Expect = 5e-07 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Frame = -2 Query: 636 YDISGRLLNVNRAAQRGSRVER----------PPRQFASSFRAYVGNLPWQAEDSRLVQM 487 + + GR ++ RG + ER P + S + +VG +P ++ L + Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREY 132 Query: 486 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 F + G V ++YD E R RGFGF+T ++ +D A++ + ++ G+ + V A R Sbjct: 133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 191 Query: 306 PQR 298 + Sbjct: 192 DSK 194
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 55.5 bits (132), Expect = 2e-07 Identities = 30/109 (27%), Positives = 53/109 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S +EE D ++ + + GR++ RA R P + + +VG + Sbjct: 71 GFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKE 127 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L F +G++ ++ DR++G+ RGF FVT + +D + Sbjct: 128 DTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 53.5 bits (127), Expect = 6e-07 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L + F + G++ + ++ D +T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 ++D+++SA ++DGR + A R Sbjct: 80 EVDASMSARP-HKVDGRVVEPKRAVSR 105
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 55.1 bits (131), Expect = 2e-07 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 39/165 (23%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVN---------RAAQR------GSR------ 580 G V E KA+ET N+YD+SGR LN+ RA QR GS Sbjct: 135 GVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASDVGS 194 Query: 579 --VERPPR---------QFASSFRA-------YVGNLPWQAEDSRLVQMFSEHGEVVNAT 454 V PP + S+ +A +V NL ++ +L ++FS G V A Sbjct: 195 GLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRAD 254 Query: 453 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 I D++ G+SRG G VT + AIS +GQ + RP+ V + Sbjct: 255 IKEDKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKM 298 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NLP+ +L + FS+ G V+ A I E G+S+G G V S E + A ++ Sbjct: 517 FVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRIMN 574 Query: 357 GQEMDGRPLRVNV 319 G ++ GR + V + Sbjct: 575 GIKISGREIDVRL 587 Score = 39.7 bits (91), Expect = 0.009 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 R ++ N+P+ + + + E GEV + D E G+SRG G V +E + A+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 150 Query: 366 ALDGQEMDGRPLRV 325 ++ ++ GRPL + Sbjct: 151 TMNKYDLSGRPLNI 164
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 55.1 bits (131), Expect = 2e-07 Identities = 31/79 (39%), Positives = 46/79 (58%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R +V N+P++ D L MF + G V + I+++ E G S+GFGFVTM +D + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFN-ERG-SKGFGFVTMERPQDAERARQE 211 Query: 363 LDGQEMDGRPLRVNVAAER 307 L G ++GR + VN A R Sbjct: 212 LHGSMIEGRKIEVNCATAR 230
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 54.7 bits (130), Expect = 3e-07 Identities = 24/80 (30%), Positives = 43/80 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +VGN+P+ + ++ ++F++ G V +V D ETG +G+GF E A+ L+ Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69 Query: 357 GQEMDGRPLRVNVAAERPQR 298 E+ R +RV + P+R Sbjct: 70 NSELGPRKIRVEFPSNDPRR 89
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 54.7 bits (130), Expect = 3e-07 Identities = 34/106 (32%), Positives = 56/106 (52%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF+T S D A + + + GR++ RA R + + RP A+ + +VG + Sbjct: 61 GFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPR-TEIGRPEAG-ATVKKLFVGGIKE 117 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 379 + E++ L F ++G VV+A IV D+ET + RGF FV + +D Sbjct: 118 EMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVD 163 Score = 53.5 bits (127), Expect = 6e-07 Identities = 28/83 (33%), Positives = 47/83 (56%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L ++ D L Q F + GE+V+ ++ D +T RSRGFGF+T + +D A +A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 ++DGR + A R + G Sbjct: 78 RP-HKVDGRVVEPKRAVPRTEIG 99
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 54.3 bits (129), Expect = 3e-07 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPP-RQFASSFRAYVGNLP 520 GFV T E+A+ AI T + + + G L + + ++G+ ++ S + + NLP Sbjct: 666 GFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLP 725 Query: 519 WQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDG 340 ++A L+++F G++ + + + +RGF FV ++ ++A+S L+G + G Sbjct: 726 FEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLG 784 Query: 339 RPLRVNVAAERPQ 301 R L + A + P+ Sbjct: 785 RRLVMQYAEQDPE 797 Score = 50.8 bits (120), Expect = 4e-06 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E+ ++ + R ++ N+ ++A + +FS++G + I D TG+S+GF +V Sbjct: 300 EQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFL 359 Query: 396 SKEDLDSAISALDGQEMDGRPLRV 325 KED A +LD Q GR L + Sbjct: 360 KKEDATRAYRSLDKQIFQGRLLHI 383 Score = 37.7 bits (86), Expect = 0.034 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD---RETGR--SRGFGFVTMASKEDLDSA 373 +V NL + L +F V AT+ + +G+ S GFGFV +KE + A Sbjct: 620 FVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVA 679 Query: 372 ISALDGQEMDGRPLRVNVA 316 IS LDG +DG L++ ++ Sbjct: 680 ISTLDGHVLDGHKLQLKLS 698
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 54.3 bits (129), Expect = 3e-07 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 363 ----LDGQEMDGRPLR---VNVAAERPQRGF*CGAAAES 268 LDG+ +D +P + RP+ G+ G +++ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDN 109 Score = 53.5 bits (127), Expect = 6e-07 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Frame = -2 Query: 636 YDISGRLLNVNRAAQRGSRVER----------PPRQFASSFRAYVGNLPWQAEDSRLVQM 487 + + GR ++ RG + ER P + S + +VG +P ++ L + Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREY 132 Query: 486 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 F + G V ++YD E R RGFGF+T ++ +D A++ + ++ G+ + V A R Sbjct: 133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 191 Query: 306 PQR 298 + Sbjct: 192 DSK 194
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 54.3 bits (129), Expect = 3e-07 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 363 ----LDGQEMDGRPLR---VNVAAERPQRGF 292 LDG+ +D +P + RP+ G+ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGW 101 Score = 53.9 bits (128), Expect = 5e-07 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 11/124 (8%) Frame = -2 Query: 636 YDISGRLLNVNRAAQRGSRVER-----------PPRQFASSFRAYVGNLPWQAEDSRLVQ 490 + + GR ++ RG + ER P + + S + +VG +P ++ L + Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKE 132 Query: 489 MFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAE 310 F+ G V ++YD E R RGFGF+T ++ +D A++ + ++ G+ + V A Sbjct: 133 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 191 Query: 309 RPQR 298 R + Sbjct: 192 RDSK 195
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/123 (28%), Positives = 62/123 (50%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V A +A++ G + V+ A++ SR +R +VGNLP++ Sbjct: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS---------VFVGNLPYK 297 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 E+S + + F + G ++ IV D+ TG +GFG+V + + + A+ L+ E+ GR Sbjct: 298 VEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-LNNSELMGRK 356 Query: 333 LRV 325 LRV Sbjct: 357 LRV 359
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 54.3 bits (129), Expect = 3e-07 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVN------RAAQRGSRVERPPRQFASSFRAY 535 GFV E+A KA++ + + G L V + A +R ++ P++ +S + Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS-KIL 827 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRE-TGRSRGFGFVTMASKEDLDSAISAL 361 V N+P+QA + ++FS GE+ + TG RGFGFV +K+D A +AL Sbjct: 828 VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886 Score = 53.9 bits (128), Expect = 5e-07 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 16/139 (11%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQ----RGSRVERPPRQ----------- 559 FV +S+ EE KA++ NR + GR + V R Q RG P Q Sbjct: 336 FVDLSSEEEVKKALKC-NRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEE 394 Query: 558 -FASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 382 A S R +V NL + + + L ++FS +G + D T + +GF FVT E Sbjct: 395 DLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454 Query: 381 DSAISALDGQEMDGRPLRV 325 A + +DGQ GR L V Sbjct: 455 VKAYAEVDGQVFQGRMLHV 473 Score = 38.1 bits (87), Expect = 0.026 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR---SRGFGFVTMASKEDLDSAIS 367 ++ NL + + L +FS+ G + + TI + S GFGFV E A+ Sbjct: 725 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 784 Query: 366 ALDGQEMDGRPLRVNVA 316 L G +DG L V ++ Sbjct: 785 QLQGHTVDGHKLEVRIS 801 Score = 35.4 bits (80), Expect = 0.17 Identities = 17/59 (28%), Positives = 35/59 (59%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 R V NLP ++ R Q+F+ G + + ++ + ++ G+ R FGF+ S+E+ +A++ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALN 60
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = -2 Query: 498 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 318 A-AERP 304 + +RP Sbjct: 194 SITKRP 199
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = -2 Query: 498 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 318 A-AERP 304 + +RP Sbjct: 194 SITKRP 199
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = -2 Query: 498 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 318 A-AERP 304 + +RP Sbjct: 194 SITKRP 199
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/109 (28%), Positives = 54/109 (49%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT + +E D A+ T + + GR++ RA R P + + +VG + Sbjct: 58 GFVTYLSTDEVDAAM-TARPHKVDGRVVEPKRAVSREDSSR--PGAHLTVKKIFVGGIKE 114 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L + F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 115 DTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 50.4 bits (119), Expect = 5e-06 Identities = 25/79 (31%), Positives = 46/79 (58%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L ++ D L + F + G + + ++ D + RSRGFGFVT S +++D+A++A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 363 LDGQEMDGRPLRVNVAAER 307 ++DGR + A R Sbjct: 75 RP-HKVDGRVVEPKRAVSR 92
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 54.3 bits (129), Expect = 3e-07 Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 39/165 (23%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVN---------RAAQRG-------------- 586 G V E KA+ET N+YD+SGR LN+ RA QR Sbjct: 144 GVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGS 203 Query: 585 -------SRVERP--PRQFASSFRA-------YVGNLPWQAEDSRLVQMFSEHGEVVNAT 454 S + P P + S+ +A +V NL ++ +L ++FS G V A Sbjct: 204 GLMNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRAD 263 Query: 453 IVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 I D++ G+SRG G VT + AIS +GQ + RP+ V + Sbjct: 264 IKEDKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKM 307 Score = 40.0 bits (92), Expect = 0.007 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NLP+ +L + FS+ G V+ A I E G+S+G G V S E + A ++ Sbjct: 526 FVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRIMN 583 Query: 357 GQEMDGRPLRVNV 319 G ++ GR + V + Sbjct: 584 GIKISGREIDVRL 596 Score = 39.7 bits (91), Expect = 0.009 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 R ++ N+P+ + + + E GEV + D E G+SRG G V +E + A+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 159 Query: 366 ALDGQEMDGRPLRV 325 ++ ++ GRPL + Sbjct: 160 TMNKYDLSGRPLNI 173
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 53.9 bits (128), Expect = 5e-07 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISG--RLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLP 520 FV ++ EA A+ + N I G L +N A+ G R + + AS + +VG+L Sbjct: 138 FVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISK--ASEYSIFVGDLS 194 Query: 519 WQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 + + +F S + +A I+ D +T SRG+GFV + D SA++ + GQ Sbjct: 195 PNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICG 254 Query: 342 GRPLRVNVAAER 307 RP+RV +A + Sbjct: 255 DRPIRVGLATPK 266
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.9 bits (128), Expect = 5e-07 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 FR +VGNL D L Q FSE+ +V +V DRE G++RGFGFV+ + A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 366 ALDGQEMDGRPLRVNVA 316 +G+ + RP++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 53.5 bits (127), Expect = 6e-07 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P++ + ++G L ++ D L + F + G++ + ++ D +T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAER 307 ++D+++SA ++DGR + A R Sbjct: 80 EVDASMSARP-HKVDGRVVEPKRAVSR 105 Score = 53.1 bits (126), Expect = 8e-07 Identities = 29/109 (26%), Positives = 52/109 (47%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S +EE D ++ + + GR++ RA R P + + +VG + Sbjct: 71 GFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKE 127 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 E+ L +G++ ++ DR++G+ RGF FVT + +D + Sbjct: 128 DTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 53.5 bits (127), Expect = 6e-07 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = -2 Query: 612 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRET 433 +V+ A + P Q A FR +VG L + S + +F G V TI + R Sbjct: 22 SVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVR 81 Query: 432 GRSR----GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 316 +R G FVT ++ED+D AI L+G+ +D R + V A Sbjct: 82 RGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124 Score = 34.7 bits (78), Expect = 0.28 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = -2 Query: 438 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 298 E R RGFGFV+ A+ ED AI ++G+++ L V A R + Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK 299
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 53.5 bits (127), Expect = 6e-07 Identities = 37/123 (30%), Positives = 61/123 (49%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 +V A KA++ G + V+ A++ SR +R +VGNLP++ Sbjct: 245 YVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS---------VFVGNLPYR 295 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++S L + F + G +V IV + TG RGFG+V + + + A+ L+ E+ GR Sbjct: 296 VDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRK 354 Query: 333 LRV 325 LRV Sbjct: 355 LRV 357
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 53.1 bits (126), Expect = 8e-07 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 + NL +Q + L + F +G++ + I D+ + +S+GFGFV + D + A+ DG Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 354 QEMDGRPLRVNVAA-ERP 304 + +DGR LRV +A +RP Sbjct: 83 KLVDGRELRVTLAKYDRP 100
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 53.1 bits (126), Expect = 8e-07 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L W L F++ GEVV+ TI D TGRSRGFGF+ +D S Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132 Query: 363 LDGQE--MDGR 337 LD +E +DGR Sbjct: 133 LDQKEHRLDGR 143 Score = 33.9 bits (76), Expect = 0.48 Identities = 20/109 (18%), Positives = 51/109 (46%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF+ +K ++ + + GR+++ +A +++ P + + +VG L Sbjct: 119 GFILFKDSSSVEKVLDQ-KEHRLDGRVIDPKKAMA----MKKDPVK-----KIFVGGLNP 168 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 +A + ++ + F + GE+ + D + + RGF F+T ++ + + Sbjct: 169 EATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect = 8e-07 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 ++ ++G L W L FS+ GEVV+ T+ D TGRSRGFGFV E +D + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156 Query: 366 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 268 L+G+ +D + + E ++ F G + ++ Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/103 (24%), Positives = 50/103 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV E DK ++ + ++G++++ RA + + + P ++ +VG L Sbjct: 141 GFVLFKESESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVKKI------FVGGLSP 191 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 + ++ + F GEV + + D +T + RGF F+T +E Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect = 8e-07 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 ++ ++G L W L FS+ GEVV+ T+ D TGRSRGFGFV E +D + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156 Query: 366 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 268 L+G+ +D + + E ++ F G + ++ Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/103 (24%), Positives = 50/103 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV E DK ++ + ++G++++ RA + + + P ++ +VG L Sbjct: 141 GFVLFKESESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVKKI------FVGGLSP 191 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 + ++ + F GEV + + D +T + RGF F+T +E Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 52.8 bits (125), Expect = 1e-06 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L W L F++ GEVV+ TI D TGRSRGFGF+ +D S Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125 Query: 363 LDGQE--MDGR 337 LD +E +DGR Sbjct: 126 LDQKEHRLDGR 136 Score = 32.7 bits (73), Expect = 1.1 Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNL-P 520 GF+ +K ++ + + GR+++ +A +++ P + + +VG L P Sbjct: 112 GFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKAMA----MKKDPVK-----KIFVGGLNP 161 Query: 519 WQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 + ++ + F E GE+ + D + + RGF F+T +E + + Sbjct: 162 ESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 211
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 52.8 bits (125), Expect = 1e-06 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS-------RVERPPRQFASSFRA 538 GFV E+A KA++ + + G L V R ++R + R ++ PR+ +S + Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEV-RISERATKPAVTLARKKQVPRKQTTS-KI 834 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRE-TGRSRGFGFVTMASKEDLDSAISAL 361 V N+P+QA + ++FS GE+ + TG RGFGFV +K+D A +AL Sbjct: 835 LVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894 Score = 51.2 bits (121), Expect = 3e-06 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPR---------------- 562 FV S EE +A++ NR + GR + V R + P Sbjct: 337 FVDFSNEEEVKQALKC-NREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEE 395 Query: 561 -QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 385 A S R +V NLP+ + + L ++FS++G + D T + +GF F+T E Sbjct: 396 EDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEH 455 Query: 384 LDSAISALDGQEMDGRPLRV 325 A S +DGQ GR L V Sbjct: 456 AVKAYSEVDGQVFQGRMLHV 475 Score = 39.3 bits (90), Expect = 0.012 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR---SRGFGFVTMASKEDLDSAIS 367 ++ NL + + +L ++FS+ G V + +I + S GFGFV E A+ Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792 Query: 366 ALDGQEMDGRPLRVNVA 316 L G +DG L V ++ Sbjct: 793 QLQGHVVDGHKLEVRIS 809 Score = 33.9 bits (76), Expect = 0.48 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 R V NLP ++ R Q+F+ G + + ++ + ++ G+ R FGF+ S+E+ A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG L + +D L F G++ + I D ET + RGF FV ED +AI ++ Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 357 GQEMDGRPLRVNVAAERPQR 298 E+ GR +RVN+A +P R Sbjct: 69 ESELFGRTIRVNLA--KPMR 86
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG L + +D L F G++ + I D ET + RGF FV ED +AI ++ Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 357 GQEMDGRPLRVNVAAERPQR 298 E+ GR +RVN+A +P R Sbjct: 69 ESELFGRTIRVNLA--KPMR 86
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 52.4 bits (124), Expect = 1e-06 Identities = 32/109 (29%), Positives = 53/109 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT S E D A++ + I G+ ++ RA R + S+ R YV + Sbjct: 67 GFVTFSGKTEVDAAMKQ-RPHIIDGKTVDPKRAVPRDDKNRSESN--VSTKRLYVSGVRE 123 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 + L + F+++G V + I+ D+ T + RGFGFVT + +D + Sbjct: 124 DHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172 Score = 50.4 bits (119), Expect = 5e-06 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS- 367 + +VG L D + + +S+ GE+ + ++ D T RSRGFGFVT + K ++D+A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 366 ---ALDGQEMD 343 +DG+ +D Sbjct: 84 RPHIIDGKTVD 94
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 PR + + YVGNLP + + +F ++G + I ++GR F FV Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHR 57 Query: 387 DLDSAISALDGQEMDGRPLRVNVAAERPQRG 295 D + A+ A DG E DGR +RV RG Sbjct: 58 DAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/127 (24%), Positives = 59/127 (46%) Frame = -2 Query: 672 EEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLV 493 E ++ +E R I R V + P Q + +V + + +S+L Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120 Query: 492 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 313 + F +G + +VY + +G+ RG+ F+ + D+ SA DG+++DGR + V+V Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 Query: 312 ERPQRGF 292 R +G+ Sbjct: 181 GRTVKGW 187
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/127 (24%), Positives = 59/127 (46%) Frame = -2 Query: 672 EEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLV 493 E ++ +E R I R V + P Q + +V + + +S+L Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120 Query: 492 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAA 313 + F +G + +VY + +G+ RG+ F+ + D+ SA DG+++DGR + V+V Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 Query: 312 ERPQRGF 292 R +G+ Sbjct: 181 GRTVKGW 187
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 52.0 bits (123), Expect = 2e-06 Identities = 21/70 (30%), Positives = 43/70 (61%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 Y+G++P+ + +++ + S G V+N +++D +TGRS+G+ F+ E SA+ L+ Sbjct: 21 YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 80 Query: 357 GQEMDGRPLR 328 G ++ R L+ Sbjct: 81 GYQLGSRFLK 90
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 52.0 bits (123), Expect = 2e-06 Identities = 23/82 (28%), Positives = 47/82 (57%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V + + +S+L + F +G + +VY++ +G+ RG+ F+ + D+ SA D Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 Query: 357 GQEMDGRPLRVNVAAERPQRGF 292 G+++DGR + V+V R +G+ Sbjct: 166 GKKIDGRRVLVDVERGRTVKGW 187
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 52.0 bits (123), Expect = 2e-06 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -2 Query: 546 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 367 ++ ++G L W L FS+ G+VV+ T+ D TGRSRGFGFV E +D + Sbjct: 95 WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 154 Query: 366 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 268 L+G+ +D + + E ++ F G + ++ Sbjct: 155 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 191 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/103 (24%), Positives = 50/103 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV E DK ++ + ++G++++ RA + + + P ++ +VG L Sbjct: 139 GFVLFKESESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVKKI------FVGGLSP 189 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 + ++ + F GEV + + D +T + RGF F+T +E Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 52.0 bits (123), Expect = 2e-06 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Frame = -2 Query: 687 TMSTIEEADKAIETFNRYDISG--RLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 T ST+E +A +Y + L N N Q+ ++ ++ +LP + Sbjct: 352 TGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQE 411 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 D L+QMF G VV+A + D++T S+ FGFV+ + +AI +++G ++ + Sbjct: 412 FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 471 Query: 333 LRVNV 319 L+V + Sbjct: 472 LKVQL 476 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G + + ++ + MFS G++ I+ + G SRG FVT ++ +AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 167 Query: 363 L-DGQEMDG 340 + Q M+G Sbjct: 168 MHQAQTMEG 176
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 52.0 bits (123), Expect = 2e-06 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Frame = -2 Query: 687 TMSTIEEADKAIETFNRYDISG--RLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 T ST+E +A +Y + L N N Q+ ++ ++ +LP + Sbjct: 352 TGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQE 411 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 D L+QMF G VV+A + D++T S+ FGFV+ + +AI +++G ++ + Sbjct: 412 FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 471 Query: 333 LRVNV 319 L+V + Sbjct: 472 LKVQL 476 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G + + ++ + MFS G++ I+ + G SRG FVT ++ +AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 167 Query: 363 L-DGQEMDG 340 + Q M+G Sbjct: 168 MHQAQTMEG 176
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L WQ L FS+ GE+ ++ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 363 LDGQEMDGRPLRVNVAAER 307 E+D + + VA R Sbjct: 82 -PHHELDSKTIDPKVAFPR 99 Score = 46.2 bits (108), Expect = 9e-05 Identities = 30/120 (25%), Positives = 58/120 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT + DK + +++ + ++ A R ++ P+ + + +VG L Sbjct: 65 GFVTFADPASVDKVLGQ-PHHELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSA 119 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + Q F + G+V +A +++D+ T R RGFGFVT ED+ + + E++ + Sbjct: 120 NTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNK 178
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L WQ L FS+ GE+ ++ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 363 LDGQEMDGRPLRVNVAAER 307 E+D + + VA R Sbjct: 82 -PHHELDSKTIDPKVAFPR 99 Score = 46.2 bits (108), Expect = 9e-05 Identities = 30/120 (25%), Positives = 58/120 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT + DK + +++ + ++ A R ++ P+ + + +VG L Sbjct: 65 GFVTFADPASVDKVLGQ-PHHELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSA 119 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + Q F + G+V +A +++D+ T R RGFGFVT ED+ + + E++ + Sbjct: 120 NTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHFHEINNK 178
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 51.2 bits (121), Expect = 3e-06 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = -2 Query: 555 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 376 +S+ + +VG++P A + + F +HG V+ ++ D+ TG+ +G FV A+ +D D Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 375 AISALDGQ 352 AI AL Q Sbjct: 177 AIRALHNQ 184 Score = 48.5 bits (114), Expect = 2e-05 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Frame = -2 Query: 693 FVTMSTIEEADKAIETF-NRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 FV +T ++AD+AI N+ + G V G R R F+ +VG+L Sbjct: 165 FVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER----ERIGTLEFKLFVGSLNK 220 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG-QEMDG 340 QA + + ++F + G V + ++ D E +SRG GFV +SKE +AI L+G M G Sbjct: 221 QATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRG 279 Query: 339 --RPLRVNVA-AERPQRG 295 +PL V A +RP+ G Sbjct: 280 CNQPLIVRFAEPKRPKPG 297
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 51.2 bits (121), Expect = 3e-06 Identities = 27/106 (25%), Positives = 57/106 (53%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF++ D+ ++T ++ + G++++ RA R + + + + +VG + Sbjct: 203 GFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQDK--------TGKIFVGGIGP 252 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 379 + FS+ G +++A ++ D++TG+SRGFGFVT S + +D Sbjct: 253 DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298 Score = 51.2 bits (121), Expect = 3e-06 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 S + ++G L W + L + F ++G V + I+ D TGRSRGFGF++ +D + Sbjct: 158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217 Query: 369 SA---LDGQEMD 343 LDG+ +D Sbjct: 218 KTQHILDGKVID 229
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 50.8 bits (120), Expect = 4e-06 Identities = 24/80 (30%), Positives = 45/80 (56%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 Y+GNL + + ++ +FSE+G V+ + D TG S+GF ++ + A+ L+ Sbjct: 34 YIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G ++ GR L+++ RP+R Sbjct: 94 GFKIGGRALKIDHTFYRPKR 113
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.8 bits (120), Expect = 4e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 363 LDGQEMDGRPLRVNVAAER 307 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/120 (25%), Positives = 59/120 (49%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT DK + +R+++ + ++ A R ++ P+ + + +VG L Sbjct: 64 GFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSV 118 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + F + G+V +A +++D+ T R RGFGFVT S ED+ + + E++ + Sbjct: 119 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNK 177
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.8 bits (120), Expect = 4e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 363 LDGQEMDGRPLRVNVAAER 307 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/120 (25%), Positives = 59/120 (49%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT DK + +R+++ + ++ A R ++ P+ + + +VG L Sbjct: 64 GFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSV 118 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + F + G+V +A +++D+ T R RGFGFVT S ED+ + + E++ + Sbjct: 119 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNK 177
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.8 bits (120), Expect = 4e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 363 LDGQEMDGRPLRVNVAAER 307 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98 Score = 49.7 bits (117), Expect = 9e-06 Identities = 32/120 (26%), Positives = 60/120 (50%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFVT DK + +R+++ + ++ A R ++ P+ + + +VG L Sbjct: 64 GFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQ----PKMVTRTKKIFVGGLSV 118 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + Q F + G+V +A +++D+ T R RGFGFVT S ED+ + + E++ + Sbjct: 119 NTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNK 177
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 50.8 bits (120), Expect = 4e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 ++ ++ NL + E++ L Q+F G V + IV D T + +G+GFV+M + ++ AI Sbjct: 437 AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 496 Query: 369 SALDGQEMDGRPLRVN 322 AL+G M R L+V+ Sbjct: 497 RALNGYTMGNRVLQVS 512 Score = 38.5 bits (88), Expect = 0.020 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 13/86 (15%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR-------------ETGRSRGFGFVTMAS 394 V LP + + +FS GE+ + ++ D+ G+S G+GFV Sbjct: 189 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVR 248 Query: 393 KEDLDSAISALDGQEMDGRPLRVNVA 316 +D + A++ L+G + + ++V+ A Sbjct: 249 PQDAEQAVNVLNGLRLQNKTIKVSFA 274
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 50.8 bits (120), Expect = 4e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 ++ ++ NL + E++ L Q+F G V + IV D T + +G+GFV+M + ++ AI Sbjct: 401 AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 460 Query: 369 SALDGQEMDGRPLRVN 322 AL+G M R L+V+ Sbjct: 461 RALNGYTMGNRVLQVS 476 Score = 38.9 bits (89), Expect = 0.015 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 13/112 (11%) Frame = -2 Query: 612 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR-- 439 N +Q GS R V LP + + +FS GE+ + ++ D+ Sbjct: 132 NAGSGSQNGSNGSTETRT-----NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQ 186 Query: 438 -----------ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 316 G+S G+GFV +D + A++ L+G + + ++V+ A Sbjct: 187 VYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 50.8 bits (120), Expect = 4e-06 Identities = 28/81 (34%), Positives = 43/81 (53%) Frame = -2 Query: 567 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 388 P Q + +VGNL + + L ++F + G + TI DRE G+ + FGFV E Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61 Query: 387 DLDSAISALDGQEMDGRPLRV 325 + AI+ L+G + GRP+ V Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 50.8 bits (120), Expect = 4e-06 Identities = 27/91 (29%), Positives = 46/91 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + +VG L W+ + L F ++GE+ + + D +TGRSRGF F+ + E +D +SA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSA 115 Query: 363 LDGQEMDGRPLRVNVAAERPQRGF*CGAAAE 271 D ++ + + A R + F G E Sbjct: 116 ADEHIINSKKVDPKKAKARHGKIFVGGLTTE 146 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/131 (19%), Positives = 59/131 (45%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 F+ + E DK + + + I+ + ++ +A R ++ +VG L + Sbjct: 101 FIVFTNTEAIDK-VSAADEHIINSKKVDPKKAKARHGKI-------------FVGGLTTE 146 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 D + F + G +V + +D++ + +GF F+T S++ + + Q++ G+ Sbjct: 147 ISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT-PKQKIAGKE 205 Query: 333 LRVNVAAERPQ 301 + V A +P+ Sbjct: 206 VDVKRATPKPE 216
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 50.8 bits (120), Expect = 4e-06 Identities = 27/74 (36%), Positives = 43/74 (58%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V + + ++ L Q+FS+ G V + I+ + T SRGFGF++ ++ E+ SAI L+ Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163 Query: 357 GQEMDGRPLRVNVA 316 QE GR L V A Sbjct: 164 SQEFYGRVLNVQKA 177 Score = 37.7 bits (86), Expect = 0.034 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF++ ST+EEA AI+ N + GR+LNV +A + P + R + P Sbjct: 145 GFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPS 204 Query: 516 QAED 505 +D Sbjct: 205 NNKD 208
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 50.1 bits (118), Expect = 7e-06 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 12/141 (8%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFAS-------SFRA 538 GFV T E A KA++ ++I G+ L V + AQRG+ +R ++ S + Sbjct: 584 GFVGFKTKEAATKALKALEGFEIDGKSLEV-KFAQRGAEDDRETKKGGDAEGGKTKSTKV 642 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATI---VYDRETG--RSRGFGFVTMASKEDLDSA 373 V NLP++A + ++FS +G++ + + TG +RGF F+ + + A Sbjct: 643 LVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARA 702 Query: 372 ISALDGQEMDGRPLRVNVAAE 310 + AL + GR L + A E Sbjct: 703 MEALKHTHLLGRHLVLQWANE 723 Score = 36.2 bits (82), Expect = 0.098 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = -2 Query: 426 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 295 S G+GFV +KE A+ AL+G E+DG+ L V A QRG Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFA----QRG 619
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 50.1 bits (118), Expect = 7e-06 Identities = 37/130 (28%), Positives = 56/130 (43%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A+ AI + Y + G +N+N VE + +S + +VGN+ Sbjct: 38 GFVHIEDKTAAEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISP 87 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 + L F E+G V+ IV D + FV M ED AI LD E G+ Sbjct: 88 TCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGK 139 Query: 336 PLRVNVAAER 307 + V ++ R Sbjct: 140 RMHVQLSTSR 149 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/79 (25%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++GNLP +A + + +F ++G+V+ I+ + +GFV + K + AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 363 LDGQEMDGRPLRVNVAAER 307 L ++ G + +NV A + Sbjct: 55 LHHYKLHG--VNINVEASK 71
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 50.1 bits (118), Expect = 7e-06 Identities = 32/109 (29%), Positives = 53/109 (48%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF+T S D A + + I GR + RA R + P A+ + +VG L Sbjct: 68 GFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPR--QEIDSPNAGATVKKLFVGGLRD 124 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 ++ L + F + G++V+ IV D++TG+ RGF F+ + +D I Sbjct: 125 DHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/81 (30%), Positives = 45/81 (55%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L ++ D L F + G +V+ ++ D +T RSRGFGF+T + +D+A +A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 363 LDGQEMDGRPLRVNVAAERPQ 301 ++DGR + A R + Sbjct: 85 RP-HKIDGRTVEPKRAVPRQE 104
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 49.7 bits (117), Expect = 9e-06 Identities = 32/109 (29%), Positives = 52/109 (47%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF+T S D+A ++ + I GR++ RA R P A+ + +VG L Sbjct: 75 GFITYSHSSMIDEAQKS-RPHKIDGRVVEPKRAVPRQDIDS--PNAGATVKKLFVGALKD 131 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 ++ + F G +V+ IV D+ETG+ RGF FV + +D + Sbjct: 132 DHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 180 Score = 46.6 bits (109), Expect = 7e-05 Identities = 24/79 (30%), Positives = 41/79 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L ++ D L F + G +V+ ++ D T RSRGFGF+T + +D A + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 363 LDGQEMDGRPLRVNVAAER 307 ++DGR + A R Sbjct: 92 RP-HKIDGRVVEPKRAVPR 109
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 49.7 bits (117), Expect = 9e-06 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNR------AAQRGSRVERPPRQFASSFRAY 535 G V + E AI F+ R L V + AA+ S+ + + + F + Sbjct: 164 GTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSK-KATREEIDNGFEVF 222 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 + NLP+ L MF E G V+ A + D G SRGFG V +++++ AI +G Sbjct: 223 IINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNG 281 Query: 354 QEMDGRPLRV 325 E++GR L V Sbjct: 282 MEVEGRVLEV 291 Score = 40.8 bits (94), Expect = 0.004 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Frame = -2 Query: 603 RAAQRGSRVERP-PRQFASSFR-----AYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD 442 R G VER RQF ++ R +V NL + L ++F GEVV A I+ Sbjct: 97 RGRTLGPIVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS 156 Query: 441 RETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 + G RG G V E + AIS DG R L V Sbjct: 157 K--GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMV 193
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 361 +VG+L +S+L ++F + + +A IV+D+ TG S+G+GFV + ++ A+S + Sbjct: 166 FVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEM 225 Query: 360 DGQEMDGRPLRVNVAAERPQ 301 G ++GR ++V + + Q Sbjct: 226 QGVFLNGRAIKVGPTSGQQQ 245
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/79 (35%), Positives = 39/79 (49%) Frame = -2 Query: 552 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 SS YVGNLP + + +FS++G VV + + R G+ FV D + A Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDA 61 Query: 372 ISALDGQEMDGRPLRVNVA 316 I DG + DG LRV +A Sbjct: 62 IHGRDGYDFDGHRLRVELA 80
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/77 (33%), Positives = 42/77 (54%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V ++P D +L FS + +A +V D RSRGFGFV+ A ++D A++ Sbjct: 29 FVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKAR 87 Query: 357 GQEMDGRPLRVNVAAER 307 + +G LRV++A R Sbjct: 88 KTKFNGHILRVDIAKRR 104 Score = 45.4 bits (106), Expect = 2e-04 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -2 Query: 534 VGNLPWQAEDS-RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 + N+PW D +L ++F +G VV ATI R+ G+ GF FVTM + A+ Sbjct: 151 IRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALENTK 209 Query: 357 GQEMDGRPLRVNVAAER 307 ++DGR + V+ A ++ Sbjct: 210 DLKIDGRKVAVDFAVQK 226
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/84 (30%), Positives = 44/84 (52%) Frame = -2 Query: 555 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 376 +S +V L + L +FS+HG+V+ A +V + + +R +GFVTM++ ++ Sbjct: 448 SSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATK 507 Query: 375 AISALDGQEMDGRPLRVNVAAERP 304 IS L E+ GR + V A P Sbjct: 508 CISHLHRTELHGRMISVEKAKNEP 531 Score = 37.7 bits (86), Expect = 0.034 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQ 559 GFVTMST +EA K I +R ++ GR+++V +A S + R+ Sbjct: 495 GFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPSEKKSSDRR 540
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 48.9 bits (115), Expect = 1e-05 Identities = 18/82 (21%), Positives = 47/82 (57%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 ++ + + +S+L + F +G + +++D+E+G+ +G+ F+ + D+ +A D Sbjct: 105 FIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHAD 164 Query: 357 GQEMDGRPLRVNVAAERPQRGF 292 G+++D + + V+V R +G+ Sbjct: 165 GKKIDSKRVLVDVERARTVKGW 186
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 48.5 bits (114), Expect = 2e-05 Identities = 21/77 (27%), Positives = 43/77 (55%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V L +++ +S++ + F +G + +V D+ T + +G+ F+ D+ +A D Sbjct: 141 FVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQAD 200 Query: 357 GQEMDGRPLRVNVAAER 307 GQ++DGR + V+V R Sbjct: 201 GQKIDGRRVLVDVERGR 217
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/109 (30%), Positives = 52/109 (47%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GF+T + D+A E + I G+ + RA R R R S + +VG L Sbjct: 76 GFITYTKSLMVDRAQEN-RPHIIDGKTVEAKRALPRPERESRETN--ISVKKLFVGGLKD 132 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 ++ L + F + G VV+ ++ D+ TG+ RGF FV + +D AI Sbjct: 133 NHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/82 (29%), Positives = 40/82 (48%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L + L + + G+VV+ ++ D T RSRGFGF+T +D A Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA-QE 91 Query: 363 LDGQEMDGRPLRVNVAAERPQR 298 +DG+ + A RP+R Sbjct: 92 NRPHIIDGKTVEAKRALPRPER 113
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/83 (31%), Positives = 43/83 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R +VG + ++ +S L + FS++G V IV DR G S+G+GFVT ++ED + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 + + L + A + Q G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/83 (31%), Positives = 43/83 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R +VG + ++ +S L + FS++G V IV DR G S+G+GFVT ++ED + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 + + L + A + Q G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/127 (26%), Positives = 60/127 (47%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV S+ E A+ A + + + + G L + + + RG E + A + + NLP+ Sbjct: 654 GFVEFSSKEAAEIAQKAMDGHVLDGHKLQL-KISNRGQDEETTETKKAIDSKILIKNLPF 712 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 +A + ++F G + + + SRGF F S ++ + A+SAL G + GR Sbjct: 713 EATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGR 771 Query: 336 PLRVNVA 316 L + A Sbjct: 772 RLVLQYA 778 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/73 (30%), Positives = 40/73 (54%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R ++ NL + A++ Q+FS++GE+ + + +TG+ +GF V E+ +A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 363 LDGQEMDGRPLRV 325 DG+ GR L + Sbjct: 362 QDGKIFQGRLLHI 374 Score = 38.9 bits (89), Expect = 0.015 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Frame = -2 Query: 615 LNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRE 436 L+ + GS ERP +S +V NL ++ L F + A + + Sbjct: 585 LSASDVMDTGSNDERPA---TASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPD 641 Query: 435 TGR-----SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 316 + S GFGFV +SKE + A A+DG +DG L++ ++ Sbjct: 642 SKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/108 (30%), Positives = 54/108 (50%) Frame = -2 Query: 642 NRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVV 463 N +I +++ +A + GS V +V NL ++ +L ++FS G VV Sbjct: 183 NNPNIPNEIIHALQAGRLGSTV-------------FVANLDYKVGWKKLKEVFSMAGVVV 229 Query: 462 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 A I+ D++ G+SRG G VT + AIS +GQ + RP+ V + Sbjct: 230 RADILEDKD-GKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 276 Score = 45.4 bits (106), Expect = 2e-04 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = -2 Query: 612 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRE 436 N+ R R P +++ RA++ N+P+ + L + E GEV ++ D E Sbjct: 51 NIKRGGNRFEPYSNPTKRY----RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE 106 Query: 435 TGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 G+SRG V +E + A L+ + GRPL+V Sbjct: 107 -GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Score = 39.7 bits (91), Expect = 0.009 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 654 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 711 Query: 357 GQEMDGRPLRVNV 319 G ++ GR + V + Sbjct: 712 GMKLSGREIDVRI 724
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 YVG L + + L F G++ + + D E+ R RGF F+ ED +AI ++ Sbjct: 9 YVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMN 68 Query: 357 GQEMDGRPLRVNVA 316 E+ GR +RVN+A Sbjct: 69 DSELCGRTIRVNLA 82
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRA-YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 427 + +Q+ S+ E+ Q + R+ +VGN+ ++ F + G++ T++YDR TG Sbjct: 44 QVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGT 103 Query: 426 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 322 +G+G++ S + A+ L+G E+ G+ + V+ Sbjct: 104 PKGYGYIEFESPAYREKALQ-LNGGELKGKKIAVS 137
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 + ++G L + + L +F +HG + ++ DR T +SRGF F+T + D +A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 363 LDGQEMDGRPLRVNVA 316 ++G+ + G+ ++V A Sbjct: 68 MNGKSLHGKAIKVEQA 83
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 S R +V NLP+ A +S L +FS+ G++ + +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 369 SALDGQEMDGRPLRV 325 LDG+ GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 45.8 bits (107), Expect = 1e-04 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 8/137 (5%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNR------AAQRGSRVERPPRQFASSFRAY 535 GFV T +A A+ + Y + L V AA+ R + + A + Sbjct: 646 GFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKII 705 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISAL 361 + NLP+QA + +F +G++ + + +DR +RGFGF S + ++A+ AL Sbjct: 706 IKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS---ARGFGFADFVSAREAENAMDAL 762 Query: 360 DGQEMDGRPLRVNVAAE 310 + GR L + A E Sbjct: 763 KNTHLLGRRLVLEFANE 779 Score = 36.6 bits (83), Expect = 0.075 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 373 +V NL + + R ++F V+A I + R S GFGFV +K +A Sbjct: 600 FVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAA 659 Query: 372 ISALDGQEMDGRPLRVNVA 316 ++A+DG ++D L V + Sbjct: 660 LAAMDGYKLDQHELVVRAS 678
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 47.4 bits (111), Expect = 4e-05 Identities = 33/108 (30%), Positives = 54/108 (50%) Frame = -2 Query: 642 NRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVV 463 N +I +++ +A + GS V +V NL ++ +L ++FS G VV Sbjct: 184 NNPNIPNEIIHALQAGRLGSTV-------------FVANLDYKVGWKKLKEVFSMAGVVV 230 Query: 462 NATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 319 A I+ D++ G+SRG G VT + AIS +GQ + RP+ V + Sbjct: 231 RADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 277 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = -2 Query: 612 NVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRE 436 N+ R R P +++ RA++ N+P+ + L + E GEV ++ D E Sbjct: 52 NIKRGGNRFEPYANPTKRY----RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE 107 Query: 435 TGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 325 G+SRG V +E + A L+ + GRPL+V Sbjct: 108 -GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 143 Score = 39.7 bits (91), Expect = 0.009 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 655 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 712 Query: 357 GQEMDGRPLRVNV 319 G ++ GR + V + Sbjct: 713 GMKLSGREIDVRI 725
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 47.4 bits (111), Expect = 4e-05 Identities = 26/83 (31%), Positives = 45/83 (54%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R YVGNL + + L F+++G++ + I ++ GF FV ++D + A Sbjct: 8 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP-----GFAFVEFEHRDDAEKACDI 62 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 L+G E+ G LRV ++ RP++G Sbjct: 63 LNGSELLGSQLRVEISKGRPRQG 85
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 47.4 bits (111), Expect = 4e-05 Identities = 21/80 (26%), Positives = 41/80 (51%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +VG + L +FS++G +++ ++YD+ G G+GF++ I L+ Sbjct: 198 FVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKELN 257 Query: 357 GQEMDGRPLRVNVAAERPQR 298 G+ ++G L +N ER +R Sbjct: 258 GRTVNGSTLFINYHVERKER 277 Score = 34.3 bits (77), Expect = 0.37 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 20/97 (20%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVY-------------------DRETGRSRGF 415 YV ++P D L + GE+++ ++ D G SRG+ Sbjct: 543 YVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRGY 602 Query: 414 GFVTMASKEDLDSAISALDGQEMD-GRPLRVNVAAER 307 GFV+ S D AI DG ++ + L V+ A +R Sbjct: 603 GFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKR 639 Score = 30.4 bits (67), Expect = 5.4 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQ 592 GF+ + E+A AIETFN + G L VN+A Q Sbjct: 384 GFIKLINHEQALAAIETFNGFMWHGNRLVVNKAVQ 418
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 47.0 bits (110), Expect = 6e-05 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRET---GRSRGFGFVTMASKEDLDSAIS 367 +V + + +S+L + F +G + IVY++ + G+ RG+ F+ + D+ SA Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYK 165 Query: 366 ALDGQEMDGRPLRVNVAAERPQRGF 292 DG+++DGR + V+V R +G+ Sbjct: 166 HADGKKIDGRRVLVDVERGRTVKGW 190
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 47.0 bits (110), Expect = 6e-05 Identities = 24/83 (28%), Positives = 43/83 (51%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R +VG + ++ ++ L + FS++G V IV DR G S+G+GF+T ++ED + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 363 LDGQEMDGRPLRVNVAAERPQRG 295 + + L + A + Q G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 47.0 bits (110), Expect = 6e-05 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E+ R +++S +VGNL + + L + FS+ G+VV A I+ R G RG G V Sbjct: 128 EKVNRNYSNSI--FVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFT 183 Query: 396 SKEDLDSAISALDG 355 + +D+D AI DG Sbjct: 184 NSDDVDRAIRQYDG 197 Score = 44.7 bits (104), Expect = 3e-04 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 22/149 (14%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQ--------------RGSRVERPPRQ 559 G V+ I++ +AIE +N Y I G +L+V S V R+ Sbjct: 279 GTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARK 338 Query: 558 FASSFRA--------YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVT 403 F + Y NLP+ S L +F G+V NA + YD + G G V Sbjct: 339 FTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSK-GAPTGIAVVE 397 Query: 402 MASKEDLDSAISALDGQEMDGRPLRVNVA 316 + +D D I L+ G L ++ A Sbjct: 398 YDNVDDADVCIERLNNYNYGGCDLDISYA 426
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 47.0 bits (110), Expect = 6e-05 Identities = 24/78 (30%), Positives = 39/78 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R ++ N+ + + + ++FS +GE+ + D TG S+GF +V A E+ A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 363 LDGQEMDGRPLRVNVAAE 310 LD Q GR L + A E Sbjct: 386 LDKQIFQGRLLHILAADE 403 Score = 44.7 bits (104), Expect = 3e-04 Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV T E+A I + I G + + + ++G+ + ++ A + + V NLP+ Sbjct: 689 GFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKK-AKNGKIIVKNLPF 747 Query: 516 QAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 +A + ++F+ G++ + + +D+ +RGF FV ++ ++A+ L G + Sbjct: 748 EATRKDVFELFNSFGQLKSVRVPKKFDKS---ARGFAFVEFVLPKEAENAMDQLQGVHLL 804 Query: 342 GRPLRVNVAAE 310 GR L + A + Sbjct: 805 GRRLVMQPAEQ 815 Score = 36.6 bits (83), Expect = 0.075 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 373 ++ NL ++ +L F V A + + + S GFGFV +KE + Sbjct: 643 FIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATAV 702 Query: 372 ISALDGQEMDGRPLRVNVAAERPQRG 295 ISA+DG +DG +++ ++ + G Sbjct: 703 ISAMDGTVIDGHKIQLKLSHRQGNAG 728
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 46.6 bits (109), Expect = 7e-05 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRG--SRVERPPRQFASSFRA----- 538 GF T +A A+ N Y + L V RA+ +G + ER A A Sbjct: 641 GFADFKTKAQAQAALAVMNGYTLDRHTLVV-RASHKGMDAAEERRKEDTAKKIAARRTKI 699 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISA 364 + NLP+QA + +F +G++ + + +DR +RGFGF S + ++A+ A Sbjct: 700 IIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS---ARGFGFADFVSAREAENAMDA 756 Query: 363 LDGQEMDGRPLRVNVAAE 310 L + GR L + A E Sbjct: 757 LKNTHLLGRRLVLEFANE 774 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = -2 Query: 549 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 370 S R +V NL ++ ++S L +FS G++ + +D S+GF +V A + A Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 369 SALDGQEMDGRPLRVNVAAER 307 LDG+ GR L + A+++ Sbjct: 354 RNLDGKIFQGRLLHILPASQK 374
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 46.6 bits (109), Expect = 7e-05 Identities = 27/99 (27%), Positives = 44/99 (44%) Frame = -2 Query: 603 RAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 424 +A Q + ++ Q S R ++ NLP+ A ++ F G V I D++T S Sbjct: 295 KAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKAS 354 Query: 423 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 307 +G FV+ + +A A DG GR L + A + Sbjct: 355 KGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNK 393 Score = 40.8 bits (94), Expect = 0.004 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV +I+ A A + + + L V A+R + S + + NLP+ Sbjct: 670 GFVGFKSIDAARTAQKAMDGKVLDAHTLVVT-FARRNAEASTTSISSGGSTKILIKNLPF 728 Query: 516 QAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 +A + +FS G++ + + +D T RGFGFV ++ + SA+ AL + Sbjct: 729 EATKRDIRDLFSSQGQLKSVRLPKKFDNTT---RGFGFVEYSTVREAQSAMEALKHTHLL 785 Query: 342 GRPL 331 GR L Sbjct: 786 GRHL 789 Score = 36.6 bits (83), Expect = 0.075 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R V LP D+RL + FS+ G V + ++ R G SR FGFV S+++ A+ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 363 LDGQEMDGRPLRVNVA 316 + +D + + +A Sbjct: 62 FNRTFIDTSRISIELA 77 Score = 33.5 bits (75), Expect = 0.63 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 373 YV NL + D RL F + A I + R S G+GFV S + +A Sbjct: 624 YVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTA 683 Query: 372 ISALDGQEMDGRPLRVNVA 316 A+DG+ +D L V A Sbjct: 684 QKAMDGKVLDAHTLVVTFA 702
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 46.6 bits (109), Expect = 7e-05 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQ--RGSRVERPPRQFASSF-RAYVGNL 523 FV E A A+E N + GR + V R + + +V ++ A SF R YV ++ Sbjct: 175 FVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASI 234 Query: 522 PWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMD 343 + + +F G ++ + +G+GF+ A+K+ +D AI++++ ++ Sbjct: 235 HPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLG 294 Query: 342 GRPLRVNVAAERP 304 G+ LRV + P Sbjct: 295 GQLLRVGRSITPP 307
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 46.6 bits (109), Expect = 7e-05 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V L + L +FS++G+VV A +V + + +R +GFVTM++ ++ IS L Sbjct: 410 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLH 469 Query: 357 GQEMDGRPLRVNVAAERP 304 E+ GR + V A P Sbjct: 470 RTELHGRMISVEKAKNEP 487 Score = 36.6 bits (83), Expect = 0.075 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRA 598 GFVTMST +EA K I +R ++ GR+++V +A Sbjct: 451 GFVTMSTSDEATKCISHLHRTELHGRMISVEKA 483
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 46.6 bits (109), Expect = 7e-05 Identities = 24/87 (27%), Positives = 45/87 (51%) Frame = -2 Query: 585 SRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFV 406 S E+ ++ + R ++ N+ + A + ++FS +GE+ I D TG+S+GF +V Sbjct: 317 SEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYV 376 Query: 405 TMASKEDLDSAISALDGQEMDGRPLRV 325 + ++ +A LD Q GR L + Sbjct: 377 LFKNADNAATAFVELDKQIFQGRLLHI 403 Score = 43.1 bits (100), Expect = 8e-04 Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPP--RQFASSFRAYVGNL 523 GF T E+A+ I + G L + + ++G+ ++ + + V NL Sbjct: 700 GFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNL 759 Query: 522 PWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQE 349 P++A + ++FS G++ + + +D+ +RGF FV ++ ++A+ L G Sbjct: 760 PFEATRKDVFELFSSFGQLKSVRVPKKFDKS---ARGFAFVEFLLPKEAENAMDQLQGVH 816 Query: 348 MDGRPLRVNVAAERPQ 301 + GR L + + P+ Sbjct: 817 LLGRRLVMEFVEQDPE 832 Score = 35.8 bits (81), Expect = 0.13 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD---RETGR--SRGFGFVTMASKEDLDSA 373 ++ NL + +L + F V A + ++ G+ S GFGF +KE ++ Sbjct: 654 FIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAV 713 Query: 372 ISALDGQEMDGRPLRVNVA 316 ISA++G +DG L++ ++ Sbjct: 714 ISAMEGTILDGHKLQLKLS 732
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 46.2 bits (108), Expect = 9e-05 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 543 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 364 R ++ N+ + A + Q+FS +GE+ + D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 363 LDGQEMDGRPLRV 325 LD Q GR L + Sbjct: 362 LDKQIFQGRLLHI 374 Score = 39.7 bits (91), Expect = 0.009 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGS--RVERPPRQFASSFRAYVGNL 523 GF+ T E+A I + I G + + + ++ S + + ++ S + V NL Sbjct: 661 GFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISG-KIIVKNL 719 Query: 522 PWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISALDGQE 349 P++A + ++FS G++ + + +D+ +RGF FV + ++A+ L G Sbjct: 720 PFEATRKDVFELFSSFGQLKSVRVPKKFDKS---ARGFAFVEFLLPSEAENAMDQLQGVH 776 Query: 348 MDGRPLRVNVAAE 310 + GR L + A + Sbjct: 777 LLGRRLVMQYAEQ 789 Score = 36.6 bits (83), Expect = 0.075 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVY-----DRETGRSRGFGFVTMASKEDLDSA 373 +V NL + ++L + F V A + + + S GFGF+ +KE + Sbjct: 615 FVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAV 674 Query: 372 ISALDGQEMDGRPLRVNVA 316 I+A+DG +DG +++ ++ Sbjct: 675 IAAMDGAVIDGHKIQLKIS 693
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 46.2 bits (108), Expect = 9e-05 Identities = 22/85 (25%), Positives = 47/85 (55%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E P++ + +V + +A + + F+E+GE+ N + DR TG +G+ V Sbjct: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122 Query: 396 SKEDLDSAISALDGQEMDGRPLRVN 322 + ++ +A+ L+GQ++ G+P+ V+ Sbjct: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 46.2 bits (108), Expect = 9e-05 Identities = 22/85 (25%), Positives = 47/85 (55%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E P++ + +V + +A + + F+E+GE+ N + DR TG +G+ V Sbjct: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122 Query: 396 SKEDLDSAISALDGQEMDGRPLRVN 322 + ++ +A+ L+GQ++ G+P+ V+ Sbjct: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 46.2 bits (108), Expect = 9e-05 Identities = 22/79 (27%), Positives = 41/79 (51%) Frame = -2 Query: 552 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 S + Y+ NLP + ++V++ G++++ ++ + G S+GF F + D + A Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367 Query: 372 ISALDGQEMDGRPLRVNVA 316 IS LDG++ G L A Sbjct: 368 ISGLDGKDTYGNKLHAQFA 386
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V NL + D+ + ++F+E G + A + YDR +GRS G V + D A+ G Sbjct: 79 VSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG 137 Query: 354 QEMDGRPLRVNVAAER--PQR 298 +DGRP+ + + A + PQR Sbjct: 138 VPLDGRPMDIQLVASQIDPQR 158
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V NLP + + L +F + G V+ I D+ TG +GF FVT S++D AI+ L+ Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 354 QEMDGRPLRV 325 M L+V Sbjct: 240 IRMYHMVLKV 249
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/86 (25%), Positives = 49/86 (56%) Frame = -2 Query: 579 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 400 +E P++ + +V ++ +A++ + + F ++GE+ N + DR TG S+G+ V Sbjct: 62 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY 121 Query: 399 ASKEDLDSAISALDGQEMDGRPLRVN 322 + + +A AL+G E+ G+ ++V+ Sbjct: 122 ETHKQALAAKEALNGAEIMGQTIQVD 147
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V NL + D+ + ++F+E G + A + YDR +GRS G V K D A+ +G Sbjct: 109 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG 167 Query: 354 QEMDGRPLRVNVAAER 307 +DGRP+ + + + Sbjct: 168 VPLDGRPMNIQLVTSQ 183
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 45.4 bits (106), Expect = 2e-04 Identities = 34/124 (27%), Positives = 55/124 (44%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FVT+ E+A+ AI TF++ +R +R V+ P + V NLP Sbjct: 97 FVTLLNGEQAEAAINTFHQ----------SRLRERELSVQLQP----TDALLCVANLPPS 142 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ ++ G + +VY TG S+G+GF K+ A S L G+ + R Sbjct: 143 LTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 202 Query: 333 LRVN 322 L V+ Sbjct: 203 LYVH 206
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 45.4 bits (106), Expect = 2e-04 Identities = 34/124 (27%), Positives = 55/124 (44%) Frame = -2 Query: 693 FVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQ 514 FVT+ E+A+ AI TF++ +R +R V+ P + V NLP Sbjct: 97 FVTLLNGEQAEAAINTFHQ----------SRLRERELSVQLQP----TDALLCVANLPPS 142 Query: 513 AEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRP 334 ++ ++ G + +VY TG S+G+GF K+ A S L G+ + R Sbjct: 143 LTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 202 Query: 333 LRVN 322 L V+ Sbjct: 203 LYVH 206
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 45.4 bits (106), Expect = 2e-04 Identities = 31/115 (26%), Positives = 48/115 (41%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A KA+ + AQ + E+ P Y+ NLP Sbjct: 106 GFVDFDSPAAAQKAVSALKASGVQ---------AQMAKQQEQDPTNL------YISNLPL 150 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 352 ++ L M G+V++ I+ D +G SRG GF M S E ++ I +G+ Sbjct: 151 SMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGK 204 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -2 Query: 552 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 S Y+ LP D LV++ +G++V+ + D+ T + +G+GFV S A Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 119 Query: 372 ISAL 361 +SAL Sbjct: 120 VSAL 123
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 45.4 bits (106), Expect = 2e-04 Identities = 29/97 (29%), Positives = 49/97 (50%) Frame = -2 Query: 594 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 415 +R SR E+ +F +V L + L +FS +G+VV A +V + + +R + Sbjct: 414 KRLSREEKGRSSCGRNF--WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCY 471 Query: 414 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 304 GFVTM++ E+ I+ L E+ G+ + V A P Sbjct: 472 GFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEP 508 Score = 37.4 bits (85), Expect = 0.044 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASS 547 GFVTMST EEA K I ++ ++ G++++V +A + P R+ S Sbjct: 472 GFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKRVPDRRDGDS 521
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 355 V NL + D+ + ++F+E G + A + YDR +GRS G V K D A+ +G Sbjct: 108 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG 166 Query: 354 QEMDGRPLRVNVAAER 307 +DGRP+ + + + Sbjct: 167 VPLDGRPMNIQLVTSQ 182
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 45.4 bits (106), Expect = 2e-04 Identities = 21/80 (26%), Positives = 42/80 (52%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +VGNL + D L + F G++V + ++G+ +GF F+ ++E + + Sbjct: 242 FVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKS 301 Query: 357 GQEMDGRPLRVNVAAERPQR 298 +++ GRPLR+ +R +R Sbjct: 302 CRKIAGRPLRMEYGEDRSKR 321
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +VG LP A +L ++FS+ G V +V ++ + RGFG+VT + ED+ A+ + Sbjct: 6 FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 64 Query: 357 GQEMDGRPLRVNVAAER 307 +G + V VA ++ Sbjct: 65 -TTFEGCKINVTVAKKK 80 Score = 42.7 bits (99), Expect = 0.001 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Frame = -2 Query: 681 STIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPWQAEDS 502 ST E+ DKA++ N+ + + P ++ NL + +E+ Sbjct: 307 STEEQEDKAVQVSNK------------------KKRKLPSDVNEGKTVFIRNLSFDSEEE 348 Query: 501 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD------GQEMDG 340 L ++ + GE+ IV +T S+G F ++E + A G ++DG Sbjct: 349 ELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDG 408 Query: 339 RPLRVNVAAERPQ 301 R L+V++A R + Sbjct: 409 RQLKVDLAVTRDE 421 Score = 42.7 bits (99), Expect = 0.001 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 16/146 (10%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYD--------ISGRLLNVNRAAQRGSRVERPPRQFASS-- 547 G+VT S +E+ +A++ ++ +L N + + E P ++ + Sbjct: 47 GYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKA 106 Query: 546 ------FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 385 R + NL ++ + L +F++ G V+ I + G+ RGFGFV + + Sbjct: 107 KVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLE 165 Query: 384 LDSAISALDGQEMDGRPLRVNVAAER 307 A+ ++ +E+ GR + V+ A + Sbjct: 166 AGKALKGMNMKEIKGRTVAVDWAVAK 191
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/115 (26%), Positives = 48/115 (41%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A KA+ + AQ + E+ P Y+ NLP Sbjct: 106 GFVDFDSPAAAQKAVSALKANGVQ---------AQMAKQQEQDPTNL------YISNLPL 150 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQ 352 ++ L M G+V++ ++ D +G SRG GF M S E ++ I +G+ Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHFNGK 204 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -2 Query: 552 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 373 S Y+ LP D LV++ +G++V+ + D+ T + +G+GFV S A Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 119 Query: 372 ISAL 361 +SAL Sbjct: 120 VSAL 123
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +V L + L +FS++G+VV A +V + + +R +GFVTM++ E+ I+ L Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 357 GQEMDGRPLRVNVAAERP 304 E+ G+ + V A P Sbjct: 469 KTELHGKMISVEKAKNEP 486 Score = 35.8 bits (81), Expect = 0.13 Identities = 15/33 (45%), Positives = 24/33 (72%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRA 598 GFVTMST EEA K I ++ ++ G++++V +A Sbjct: 450 GFVTMSTAEEATKCINHLHKTELHGKMISVEKA 482
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/121 (26%), Positives = 51/121 (42%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A KA+ + AQ + E+ P Y+ NLP Sbjct: 102 GFVDFDSPSSAQKAVTALKASGVQ---------AQMAKQQEQDPTNL------YISNLPL 146 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 ++ L M G+V++ I+ D +G SRG GF M S E ++ I+ +G+ + Sbjct: 147 SMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEKCEAIITHFNGKYIKTP 205 Query: 336 P 334 P Sbjct: 206 P 206
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 44.7 bits (104), Expect = 3e-04 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = -2 Query: 585 SRVERP-PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 409 S + RP + + R +VGNLP + ++F+++GE I + +GFGF Sbjct: 275 SLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGF 328 Query: 408 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 316 + + S+ + A + LD M GR LRV A Sbjct: 329 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 359 Score = 30.8 bits (68), Expect = 4.1 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 391 V NL + L + FS+ G + A ++ D + GRS G G V ASK Sbjct: 367 VRNLSPYVSNELLEEAFSQFGPIERAVVIVD-DRGRSTGKGIVEFASK 413
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/85 (25%), Positives = 44/85 (51%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E + S YVGNL + + ++ ++FS+ G++ + D+ + GF FV Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 Query: 396 SKEDLDSAISALDGQEMDGRPLRVN 322 S+ D ++A+ ++G +D R +R + Sbjct: 90 SRADAENAMRYINGTRLDDRIIRTD 114
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/85 (25%), Positives = 44/85 (51%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E + S YVGNL + + ++ ++FS+ G++ + D+ + GF FV Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 Query: 396 SKEDLDSAISALDGQEMDGRPLRVN 322 S+ D ++A+ ++G +D R +R + Sbjct: 90 SRADAENAMRYINGTRLDDRIIRTD 114
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/85 (25%), Positives = 44/85 (51%) Frame = -2 Query: 576 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 397 E + S YVGNL + + ++ ++FS+ G++ + D+ + GF FV Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 Query: 396 SKEDLDSAISALDGQEMDGRPLRVN 322 S+ D ++A+ ++G +D R +R + Sbjct: 90 SRADAENAMRYINGTRLDDRIIRTD 114
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 44.7 bits (104), Expect = 3e-04 Identities = 32/121 (26%), Positives = 51/121 (42%) Frame = -2 Query: 696 GFVTMSTIEEADKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQFASSFRAYVGNLPW 517 GFV + A KA+ + AQ + E+ P Y+ NLP Sbjct: 100 GFVDFDSPSAAQKAVTALKASGVQ---------AQMAKQQEQDPTNL------YISNLPL 144 Query: 516 QAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGR 337 ++ L M G+V++ I+ D +G SRG GF M S E ++ I+ +G+ + Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIKTP 203 Query: 336 P 334 P Sbjct: 204 P 204
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 44.7 bits (104), Expect = 3e-04 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = -2 Query: 585 SRVERP-PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 409 S + RP + + R +VGNLP + ++F+++GE I + +GFGF Sbjct: 283 SLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGF 336 Query: 408 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 316 + + S+ + A + LD M GR LRV A Sbjct: 337 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 367 Score = 30.8 bits (68), Expect = 4.1 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 534 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 391 V NL + L + FS+ G + A ++ D + GRS G G V ASK Sbjct: 375 VRNLSPYVSNELLEEAFSQFGPIERAVVIVD-DRGRSTGKGIVEFASK 421
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 44.3 bits (103), Expect = 4e-04 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = -2 Query: 537 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 358 +VG LP A +L ++FS+ G V +V ++ + RGFG+VT + ED+ A+ + Sbjct: 6 FVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 64 Query: 357 GQEMDGRPLRVNVAAER 307 +G + V VA ++ Sbjct: 65 -TTFEGCKIDVTVAKKK 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,211,012 Number of Sequences: 219361 Number of extensions: 2094371 Number of successful extensions: 6737 Number of sequences better than 10.0: 429 Number of HSP's better than 10.0 without gapping: 6035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6589 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
