>TSR1_YEAST (Q07381) Ribosome biogenesis protein TSR1 (20S rRNA accumulation|
            protein 1)
          Length = 788

 Score =  103 bits (256), Expect = 6e-22
 Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
 Frame = -1

Query: 665  APISFPPVPLIVLKN--IDGQQPVIAAVGTLKSVDPDQIILKKIVLTGYPQRVSKLKAMV 492
            AP+ F   P I  K    D +   +   GT  + D  +I+ K+ +LTG+P R  K    V
Sbjct: 658  APVDFTQSPAIFFKPSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTV 717

Query: 491  RYMFHHPEDVRWFKPVELWTKHGKRGRIKETVGTHGSMKCIFNSSVQQHDTVCMSLFKRA 312
            RYMF  PEDV WFK + L+TK G+ G IKE++GTHG  K  F+  +   D V MSL+KR 
Sbjct: 718  RYMFFRPEDVEWFKSIPLFTKSGRSGFIKESLGTHGYFKATFDGKLSAQDVVAMSLYKRM 777

Query: 311  FP 306
            +P
Sbjct: 778  WP 779

>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = -1

Query: 599  IAAVGTLKSVDPDQIILKKIVLTGYPQRVSKLKAMVRYMFHHPEDVRWFKPVELWTKHGK 420
            IAA G++ ++D    I+KK+ LTG P ++ K  A ++ MF  P +V  F+   + T  G 
Sbjct: 851  IAATGSVLNIDQSTDIVKKLKLTGVPYKIFKNTAFIKKMFSSPLEVAKFEGANIRTVSGI 910

Query: 419  RGRIKETVG-THGSMKCIFNSSVQQHDTV 336
            RG++K+ V   HG  +  F   +   D V
Sbjct: 911  RGQVKKAVDQEHGHFRATFEDKILMSDIV 939

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
 Frame = -1

Query: 668  YAPISFPPVPL----IVLKNIDGQQPVIAAVGTLKSVDPDQIILKKIVLTGYPQRVSKLK 501
            Y P+  P  P     IV  +  G    IAA G ++ +D +  I+KK+ L G+P ++ K  
Sbjct: 886  YGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIEIVKKLKLVGFPYKIFKNT 945

Query: 500  AMVRYMFHHPEDVRWFKPVELWTKHGKRGRIKETVG-THGSMKCIFNSSVQQHDTVCMSL 324
            A ++ MF    +V  F+  ++ T  G RG IK  +    G  +  F   +   D V   +
Sbjct: 946  AFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKPEGHYRAAFEDKILMSDIV---I 1002

Query: 323  FKRAFPKWPEHFYHQI 276
             +  +P   + FY+ +
Sbjct: 1003 LRSWYPVRVKKFYNPV 1018

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
 Frame = -1

Query: 668  YAPISFPPVPLIVLKNIDGQQPV--IAAVGTLKSVDPDQIILKKIVLTGYPQRVSKLKAM 495
            + PI+      + ++++ G  P   IAA G +  +D    I+KK+ LTG+P ++ K  + 
Sbjct: 983  WGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSF 1042

Query: 494  VRYMFHHPEDVRWFKPVELWTKHGKRGRIKETV-GTHGSMKCIFNSSVQQHDTVCM 330
            ++ MF+   +V  F+   + T  G RG+IK+ +    G+ +  F   +   D V M
Sbjct: 1043 IKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDIVFM 1098

>TTC8_HUMAN (Q8TAM2) Tetratricopeptide repeat protein 8 (TPR repeat protein 8)|
           (Bardet-Biedl syndrome 8 protein)
          Length = 531

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 599 IAAVGTLKSVDPDQIILKKIVLTGYPQRVSKLKAMVRYMFHHPEDVR 459
           +     L S D   I L ++ LT Y Q+    KA+  Y+FHH  DV+
Sbjct: 151 LGTASMLTSPDGPFINLSRLNLTKYSQKPKLAKALFEYIFHHENDVK 197

>TTC8_MOUSE (Q8VD72) Tetratricopeptide repeat protein 8 (TPR repeat protein 8)|
           (Bardet-Biedl syndrome 8 protein homolog)
          Length = 515

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
 Frame = -1

Query: 599 IAAVGTLKSVDPDQIILKKIVLTGYPQRVSKLKAMVRYMFHHPEDVRW----------FK 450
           +     L S D   I L ++ LT Y Q+    KA+  Y+ HH  DV+           + 
Sbjct: 161 LGTASMLTSPDGPFINLSRLNLTKYSQKPKLAKALFEYILHHENDVKMALDLASLSTEYS 220

Query: 449 PVELWTKHGKRGRIKETVGTHGSMKCIFNSSVQQHDTV------------------CMSL 324
             + W    + G+    +G +   +  F S+++Q + V                   ++L
Sbjct: 221 QYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYIILDQPVTALNL 280

Query: 323 FKRAFPKWP 297
           FK+   K+P
Sbjct: 281 FKQGLDKFP 289

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor|
           (Muscle attachment abnormal protein 3)
          Length = 3767

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 606 TCHCCSRYTEKCGS*PDYSQKNCIDWVSPESLETQSNGAVHVPPPRRRQMVQAC*AVDET 427
           TC C   Y ++      +  KNC+  V P+  E   +  +   P +R    + C  V+ T
Sbjct: 787 TCRCKDSYRDESSDTLKHPGKNCVRTVQPDPPECDVSDPMSCDPAKR----EVCIFVENT 842

Query: 426 WQTRPDQGDCRHP 388
           ++ R   G  R P
Sbjct: 843 YKCRCANGYSRLP 855

>NIRS_PSEAE (P24474) Nitrite reductase precursor (EC 1.7.2.1) (Cytochrome cd1)|
           (Cytochrome oxidase) (Hydroxylamine reductase) (EC
           1.7.99.1)
          Length = 568

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 587 GTLKSVDPDQIILKKIVLTGYPQRVSKLKAMVRYMFHHPEDVRWFKPVELWTK 429
           G +  VD D   + K++ TGY   +S++ A  RY+     D R    ++LW K
Sbjct: 184 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDAR-IDMIDLWAK 235

>ISPE_STRA5 (Q8E245) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 283

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
 Frame = +1

Query: 292 CSGHLGKARLNKLIHTVSCCWTLLLNMHFIEPWVPTVSLIRPRLPCFVHSSTGLNHL--- 462
           CS  LGK  + K + T+  CW +L+   F    + T S+ R  + C   S   ++ L   
Sbjct: 145 CSLVLGKGEIVKPLPTLRPCWIVLVKPDF---GISTKSIFRD-IDCKSISRVDIDLLKSA 200

Query: 463 -TSSGWWNMYRTIALSFE--TLWGYPV-NTIFLRIIWSGSTLFSVPTAAMTGCCPSMF 624
             SS +  M +++  S E  T+   PV +TI  R++ SG+ +     A MTG  P++F
Sbjct: 201 ILSSDYQLMVKSMGNSLEDITITKNPVISTIKERMLNSGADV-----ALMTGSGPTVF 253

>ISPE_STRA3 (Q8E7K5) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 283

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
 Frame = +1

Query: 292 CSGHLGKARLNKLIHTVSCCWTLLLNMHFIEPWVPTVSLIRPRLPCFVHSSTGLNHL--- 462
           CS  LGK  + K + T+  CW +L+   F    + T S+ R  + C   S   ++ L   
Sbjct: 145 CSLVLGKGEIVKPLPTLRPCWIVLVKPDF---GISTKSIFRD-IDCKSISRVDIDLLKSA 200

Query: 463 -TSSGWWNMYRTIALSFE--TLWGYPV-NTIFLRIIWSGSTLFSVPTAAMTGCCPSMF 624
             SS +  M +++  S E  T+   PV +TI  R++ SG+ +     A MTG  P++F
Sbjct: 201 ILSSDYQLMVKSMGNSLEDITITKNPVISTIKERMLNSGADV-----ALMTGSGPTVF 253

>ISPE_STRA1 (Q3K3L9) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 283

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
 Frame = +1

Query: 292 CSGHLGKARLNKLIHTVSCCWTLLLNMHFIEPWVPTVSLIRPRLPCFVHSSTGLNHL--- 462
           CS  LGK  + K + T+  CW +L+   F    + T S+ R  + C   S   ++ L   
Sbjct: 145 CSLVLGKGEIVKPLPTLRPCWIVLVKPDF---GISTKSIFRD-IDCKSISRVDIDLLKSA 200

Query: 463 -TSSGWWNMYRTIALSFE--TLWGYPV-NTIFLRIIWSGSTLFSVPTAAMTGCCPSMF 624
             SS +  M +++  S E  T+   PV +TI  R++ SG+ +     A MTG  P++F
Sbjct: 201 ILSSDYQLMVKSMGNSLEDITITKNPVISTIKERMLNSGADV-----ALMTGSGPTVF 253

>ALR_RICCN (Q92JD9) Alanine racemase (EC 5.1.1.1)|
          Length = 355

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 LLLNMHFIEPWVPTVSLIRPRLPCFVHSSTGLNHL 462
           +L N+  IE W    +L    LPC++H +TG+N L
Sbjct: 100 VLNNLKQIEIWQKFSNLKNRLLPCYLHFNTGINRL 134

>NIRS_PARPN (P72181) Nitrite reductase precursor (EC 1.7.2.1) (Cytochrome cd1)|
           (Cytochrome oxidase) (Hydroxylamine reductase) (EC
           1.7.99.1)
          Length = 596

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 587 GTLKSVDPDQIILKKIVLTGYPQRVSKLKAMVRYMFHHPEDVRWFKPVELWTK 429
           G +  +D     +K ++ TGY   +S+L A  RY+F    D +    ++LW K
Sbjct: 206 GQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGK-VNMIDLWMK 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,660,448
Number of Sequences: 219361
Number of extensions: 2281671
Number of successful extensions: 6585
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6585
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)