ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2h19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 8e-62
2gb|AY107796.1| Zea mays PCO067331 mRNA sequence 200 4e-48
3gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 113 8e-22
4gb|AC136447.4| Oryza sativa (japonica cultivar-group) chromosome... 113 8e-22
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 8e-22
7ref|NM_103432.1| Arabidopsis thaliana unknown protein AT1G42440 ... 56 2e-04
8gb|BT000755.1| Arabidopsis thaliana clone RAFL09-54-N01 (R19034)... 56 2e-04
9gb|AY133551.1| Arabidopsis thaliana At1g42440/F7F22_7 mRNA, comp... 56 2e-04
10gb|AF361826.1| Arabidopsis thaliana At1g42440/F7F22_7 mRNA, comp... 56 2e-04
11ref|XM_824258.1| Trypanosoma brucei TREU927 hypothetical protein... 44 0.58
12gb|DQ020485.1| Sus scrofa clone BAC KNP_244B5, complete sequence 44 0.58
13emb|AL354948.7| Human DNA sequence from clone RP11-378F20 on chr... 42 2.3
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
15dbj|AP004662.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
16dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17emb|AL583785.2|HS536O18 Homo sapiens chromosome 9 BAC RP11-536O1... 42 2.3
18gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 9.1
19gb|AY350713.1| Capsella rubella clone BAC Cr33L6, complete sequence 40 9.1
20gb|AC110541.12| Mus musculus chromosome 7, clone RP23-105F19, co... 40 9.1
21emb|CR396585.6| Zebrafish DNA sequence from clone DKEY-270J5 in ... 40 9.1
22emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 o... 40 9.1
23emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in ... 40 9.1
24gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cance... 40 9.1
25gb|AC148528.15| Medicago truncatula clone mth2-53h4, complete se... 40 9.1
26gb|AC055769.4|AC055769 Arabidopsis thaliana chromosome 1 BAC T9G... 40 9.1
27gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana... 40 9.1
28gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Re... 40 9.1
29dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 9.1
30gb|DQ278875.1| Danio rerio thyroglobulin mRNA, partial cds 40 9.1 
>dbj|AK068577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157I04, full
            insert sequence
          Length = 2939

 Score =  246 bits (124), Expect = 8e-62
 Identities = 312/377 (82%)
 Strand = Plus / Minus

                                                                        
Query: 292  tgttctggccatttggggaaagctcgtttgaacaagctcatacacacggtatcgtgctgc 351
            |||||||||||||||||| |||| |||||| | | |||||| ||||||||||| ||||||
Sbjct: 2531 tgttctggccatttggggtaagcgcgtttgtaaaggctcatgcacacggtatcatgctgc 2472

                                                                        
Query: 352  tggacgctgctgttgaatatgcatttcatcgaaccatgggtgccgacagtctccttgatc 411
            ||||||||||| ||||||||||||||||| | |||||| ||||| |||||||||||||| 
Sbjct: 2471 tggacgctgctattgaatatgcatttcatagcaccatgagtgccaacagtctccttgatt 2412

                                                                        
Query: 412  cggccgcgtttgccatgtttcgtccacagctcaacaggcttgaaccatctgacgtcttct 471
            ||||| |||   |||||||||||||||| ||| |||||||| |||||  |||| ||||| 
Sbjct: 2411 cggccacgtcgaccatgtttcgtccacaactctacaggcttaaaccacttgacatcttca 2352

                                                                        
Query: 472  gggtggtggaacatgtaccgcaccattgctttgagtttcgagactctctggggataccca 531
            || | || ||||||||| ||||| | |||||| ||||| ||||| |  || ||||| |||
Sbjct: 2351 ggattgtagaacatgtatcgcactactgctttcagttttgagacccgttgaggataacca 2292

                                                                        
Query: 532  gtcaatacaannnnnnngagaataatctggtcaggatccacacttttcagtgtacctact 591
            ||||| ||||        ||||||||| |||| ||||||||||||||||||| ||| || 
Sbjct: 2291 gtcaaaacaattttcttaagaataatccggtccggatccacacttttcagtgaaccaaca 2232

                                                                        
Query: 592  gcagcaatgacaggttgttgcccatctatgttcttcaaaacaatcagaggaacgggtgga 651
            ||||||||| |||| || | ||||||| || |||| | |||||| ||||| |  || |||
Sbjct: 2231 gcagcaatggcaggctgctccccatctctgctctttagaacaataagagggagtggagga 2172

                             
Query: 652  aaggaaattggagcata 668
            ||| |||||||||||||
Sbjct: 2171 aagcaaattggagcata 2155
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>gb|AY107796.1| Zea mays PCO067331 mRNA sequence
          Length = 818

 Score =  200 bits (101), Expect = 4e-48
 Identities = 283/346 (81%)
 Strand = Plus / Minus

                                                                       
Query: 323 acaagctcatacacacggtatcgtgctgctggacgctgctgttgaatatgcatttcatcg 382
           |||||||||| ||||| ||||| |||||||| | |||||| ||||||| ||||||||| |
Sbjct: 466 acaagctcatgcacacagtatcatgctgctgaatgctgctattgaataagcatttcatgg 407

                                                                       
Query: 383 aaccatgggtgccgacagtctccttgatccggccgcgtttgccatgtttcgtccacagct 442
            |||||| || || |||||||||||||| ||||| ||    |||||||| ||||||| ||
Sbjct: 406 caccatgagtaccaacagtctccttgatgcggccacgacgaccatgttttgtccacaact 347

                                                                       
Query: 443 caacaggcttgaaccatctgacgtcttctgggtggtggaacatgtaccgcaccattgctt 502
           ||||||||||||||||| | ||||| || || | ||||||||| |||||||| || | ||
Sbjct: 346 caacaggcttgaaccattttacgtcgtcgggattgtggaacatataccgcacgatcgatt 287

                                                                       
Query: 503 tgagtttcgagactctctggggatacccagtcaatacaannnnnnngagaataatctggt 562
           | ||||||||||||||||| |||||||| ||||  ||||        ||||| ||| |||
Sbjct: 286 tcagtttcgagactctctgtggatacccggtcagaacaattttcttcagaatgatccggt 227

                                                                       
Query: 563 caggatccacacttttcagtgtacctactgcagcaatgacaggttgttgcccatctatgt 622
           | |||||||||||||| || | |||||| ||||  ||| ||||||| |  |||||| |||
Sbjct: 226 ctggatccacactttttagcgaacctacagcagagatggcaggttgctcgccatctctgt 167

                                                         
Query: 623 tcttcaaaacaatcagaggaacgggtggaaaggaaattggagcata 668
           |||||||||| || |||||||  || || |||||||||||||||||
Sbjct: 166 tcttcaaaactattagaggaagtggagggaaggaaattggagcata 121
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>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14,
              complete sequence
          Length = 121894

 Score =  113 bits (57), Expect = 8e-22
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                          
Query: 292    tgttctggccatttggggaaagctcgtttgaacaagctcatacacacggtatcgtgctgc 351
              |||||||||||||||||| |||| |||||| | | |||||| ||||||||||| ||||||
Sbjct: 111165 tgttctggccatttggggtaagcgcgtttgtaaaggctcatgcacacggtatcatgctgc 111106

                                           
Query: 352    tggacgctgctgttgaatatgcatttcat 380
              ||||||||||| |||||||||||||||||
Sbjct: 111105 tggacgctgctattgaatatgcatttcat 111077



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                          
Query: 550    agaataatctggtcaggatccacacttttcagtgtacctactgcagcaatgacaggttgt 609
              ||||||||| |||| ||||||||||||||||||| ||| || ||||||||| |||| || 
Sbjct: 109910 agaataatccggtccggatccacacttttcagtgaaccaacagcagcaatggcaggctgc 109851

                                                                         
Query: 610    tgcccatctatgttcttcaaaacaatcagaggaacgggtggaaaggaaattggagcata 668
              | ||||||| || |||| | |||||| ||||| |  || |||||| |||||||||||||
Sbjct: 109850 tccccatctctgctctttagaacaataagagggagtggaggaaagcaaattggagcata 109792



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                          
Query: 384    accatgggtgccgacagtctccttgatccggccgcgtttgccatgtttcgtccacagctc 443
              |||||| ||||| |||||||||||||| ||||| |||   |||||||||||||||| |||
Sbjct: 110999 accatgagtgccaacagtctccttgattcggccacgtcgaccatgtttcgtccacaactc 110940

                      
Query: 444    aacaggct 451
               |||||||
Sbjct: 110939 tacaggct 110932
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>gb|AC136447.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0056F11, complete sequence
          Length = 89986

 Score =  113 bits (57), Expect = 8e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                         
Query: 292   tgttctggccatttggggaaagctcgtttgaacaagctcatacacacggtatcgtgctgc 351
             |||||||||||||||||| |||| |||||| | | |||||| ||||||||||| ||||||
Sbjct: 85520 tgttctggccatttggggtaagcgcgtttgtaaaggctcatgcacacggtatcatgctgc 85579

                                          
Query: 352   tggacgctgctgttgaatatgcatttcat 380
             ||||||||||| |||||||||||||||||
Sbjct: 85580 tggacgctgctattgaatatgcatttcat 85608



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 100/119 (84%)
 Strand = Plus / Plus

                                                                         
Query: 550   agaataatctggtcaggatccacacttttcagtgtacctactgcagcaatgacaggttgt 609
             ||||||||| |||| ||||||||||||||||||| ||| || ||||||||| |||| || 
Sbjct: 86775 agaataatccggtccggatccacacttttcagtgaaccaacagcagcaatggcaggctgc 86834

                                                                        
Query: 610   tgcccatctatgttcttcaaaacaatcagaggaacgggtggaaaggaaattggagcata 668
             | ||||||| || |||| | |||||| ||||| |  || |||||| |||||||||||||
Sbjct: 86835 tccccatctctgctctttagaacaataagagggagtggaggaaagcaaattggagcata 86893



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                         
Query: 384   accatgggtgccgacagtctccttgatccggccgcgtttgccatgtttcgtccacagctc 443
             |||||| ||||| |||||||||||||| ||||| |||   |||||||||||||||| |||
Sbjct: 85686 accatgagtgccaacagtctccttgattcggccacgtcgaccatgtttcgtccacaactc 85745

                     
Query: 444   aacaggct 451
              |||||||
Sbjct: 85746 tacaggct 85753
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 8e-22
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                            
Query: 292      tgttctggccatttggggaaagctcgtttgaacaagctcatacacacggtatcgtgctgc 351
                |||||||||||||||||| |||| |||||| | | |||||| ||||||||||| ||||||
Sbjct: 10921645 tgttctggccatttggggtaagcgcgtttgtaaaggctcatgcacacggtatcatgctgc 10921586

                                             
Query: 352      tggacgctgctgttgaatatgcatttcat 380
                ||||||||||| |||||||||||||||||
Sbjct: 10921585 tggacgctgctattgaatatgcatttcat 10921557



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                            
Query: 550      agaataatctggtcaggatccacacttttcagtgtacctactgcagcaatgacaggttgt 609
                ||||||||| |||| ||||||||||||||||||| ||| || ||||||||| |||| || 
Sbjct: 10920390 agaataatccggtccggatccacacttttcagtgaaccaacagcagcaatggcaggctgc 10920331

                                                                           
Query: 610      tgcccatctatgttcttcaaaacaatcagaggaacgggtggaaaggaaattggagcata 668
                | ||||||| || |||| | |||||| ||||| |  || |||||| |||||||||||||
Sbjct: 10920330 tccccatctctgctctttagaacaataagagggagtggaggaaagcaaattggagcata 10920272



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 384      accatgggtgccgacagtctccttgatccggccgcgtttgccatgtttcgtccacagctc 443
                |||||| ||||| |||||||||||||| ||||| |||   |||||||||||||||| |||
Sbjct: 10921479 accatgagtgccaacagtctccttgattcggccacgtcgaccatgtttcgtccacaactc 10921420

                        
Query: 444      aacaggct 451
                 |||||||
Sbjct: 10921419 tacaggct 10921412
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 8e-22
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                            
Query: 292      tgttctggccatttggggaaagctcgtttgaacaagctcatacacacggtatcgtgctgc 351
                |||||||||||||||||| |||| |||||| | | |||||| ||||||||||| ||||||
Sbjct: 11000834 tgttctggccatttggggtaagcgcgtttgtaaaggctcatgcacacggtatcatgctgc 11000775

                                             
Query: 352      tggacgctgctgttgaatatgcatttcat 380
                ||||||||||| |||||||||||||||||
Sbjct: 11000774 tggacgctgctattgaatatgcatttcat 11000746



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                            
Query: 550      agaataatctggtcaggatccacacttttcagtgtacctactgcagcaatgacaggttgt 609
                ||||||||| |||| ||||||||||||||||||| ||| || ||||||||| |||| || 
Sbjct: 10999579 agaataatccggtccggatccacacttttcagtgaaccaacagcagcaatggcaggctgc 10999520

                                                                           
Query: 610      tgcccatctatgttcttcaaaacaatcagaggaacgggtggaaaggaaattggagcata 668
                | ||||||| || |||| | |||||| ||||| |  || |||||| |||||||||||||
Sbjct: 10999519 tccccatctctgctctttagaacaataagagggagtggaggaaagcaaattggagcata 10999461



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 384      accatgggtgccgacagtctccttgatccggccgcgtttgccatgtttcgtccacagctc 443
                |||||| ||||| |||||||||||||| ||||| |||   |||||||||||||||| |||
Sbjct: 11000668 accatgagtgccaacagtctccttgattcggccacgtcgaccatgtttcgtccacaactc 11000609

                        
Query: 444      aacaggct 451
                 |||||||
Sbjct: 11000608 tacaggct 11000601
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>ref|NM_103432.1| Arabidopsis thaliana unknown protein AT1G42440 mRNA, complete cds
          Length = 2741

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 442  tcaacaggcttgaaccatctgacgtcttctgggtggtggaacat 485
            |||||||||||||||||| | |||||||| |||| |||||||||
Sbjct: 2326 tcaacaggcttgaaccatttcacgtcttcggggttgtggaacat 2283
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>gb|BT000755.1| Arabidopsis thaliana clone RAFL09-54-N01 (R19034) unknown protein
            (At1g42440) mRNA, complete cds
          Length = 2717

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 442  tcaacaggcttgaaccatctgacgtcttctgggtggtggaacat 485
            |||||||||||||||||| | |||||||| |||| |||||||||
Sbjct: 2306 tcaacaggcttgaaccatttcacgtcttcggggttgtggaacat 2263
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>gb|AY133551.1| Arabidopsis thaliana At1g42440/F7F22_7 mRNA, complete cds
          Length = 2382

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 442  tcaacaggcttgaaccatctgacgtcttctgggtggtggaacat 485
            |||||||||||||||||| | |||||||| |||| |||||||||
Sbjct: 2210 tcaacaggcttgaaccatttcacgtcttcggggttgtggaacat 2167
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>gb|AF361826.1| Arabidopsis thaliana At1g42440/F7F22_7 mRNA, complete cds
          Length = 2742

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 442  tcaacaggcttgaaccatctgacgtcttctgggtggtggaacat 485
            |||||||||||||||||| | |||||||| |||| |||||||||
Sbjct: 2326 tcaacaggcttgaaccatttcacgtcttcggggttgtggaacat 2283
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>ref|XM_824258.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.52.0010)
           partial mRNA
          Length = 1293

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 336 cacggtatcgtgctgctggacg 357
           ||||||||||||||||||||||
Sbjct: 661 cacggtatcgtgctgctggacg 682
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>gb|DQ020485.1| Sus scrofa clone BAC KNP_244B5, complete sequence
          Length = 151947

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 552    aataatctggtcaggatccaca 573
              ||||||||||||||||||||||
Sbjct: 114135 aataatctggtcaggatccaca 114156
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>emb|AL354948.7| Human DNA sequence from clone RP11-378F20 on chromosome 9 Contains
           a novel gene, complete sequence
          Length = 175097

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 166 agcacccaccaccgctccact 186
           |||||||||||||||||||||
Sbjct: 321 agcacccaccaccgctccact 301
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 274      tatatttgatgatagaaatgt 294
                |||||||||||||||||||||
Sbjct: 22201843 tatatttgatgatagaaatgt 22201823
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>dbj|AP004662.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0048G02
          Length = 155542

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 274   tatatttgatgatagaaatgt 294
             |||||||||||||||||||||
Sbjct: 18219 tatatttgatgatagaaatgt 18199
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>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1117_F10
          Length = 169948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 274    tatatttgatgatagaaatgt 294
              |||||||||||||||||||||
Sbjct: 164806 tatatttgatgatagaaatgt 164786
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>emb|AL583785.2|HS536O18 Homo sapiens chromosome 9 BAC RP11-536O18, complete sequence
          Length = 174798

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 166   agcacccaccaccgctccact 186
             |||||||||||||||||||||
Sbjct: 97299 agcacccaccaccgctccact 97279
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 300     ccatttggggaaagctcgtttgaa 323
               ||||||||| ||||||||||||||
Sbjct: 2397685 ccatttgggtaaagctcgtttgaa 2397708
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>gb|AY350713.1| Capsella rubella clone BAC Cr33L6, complete sequence
          Length = 74492

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   cttctgggtggtggaacatg 486
             ||||||||||||||||||||
Sbjct: 27382 cttctgggtggtggaacatg 27363
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>gb|AC110541.12| Mus musculus chromosome 7, clone RP23-105F19, complete sequence
          Length = 213499

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 582    tgtacctactgcagcaatgacagg 605
              |||||||||||||||| |||||||
Sbjct: 115571 tgtacctactgcagcactgacagg 115548
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>emb|CR396585.6| Zebrafish DNA sequence from clone DKEY-270J5 in linkage group 15,
              complete sequence
          Length = 138953

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gacagtacaacacaaggcaa 96
              ||||||||||||||||||||
Sbjct: 118911 gacagtacaacacaaggcaa 118892
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>emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 on chromosome 22 Contains the
              genes for SREBF2 (sterol regulatory element binding
              transcription factor 2), NAGA
              (alpha-N-acetylgalactosaminidase), a gene similar to
              neuronal-specific septin 3, a pseudogene similar to ANT2
              (adenine nucleotide translocator 2), 2 mRNAs based on ESTs,
              a genomic marker D22S1178, a CA repeat polymorpism, ESTs
              and a CpG island, complete sequence
          Length = 220895

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 155    ctgcatcaacaagcacccaccacc 178
              ||||||||||| ||||||||||||
Sbjct: 198390 ctgcatcaacaggcacccaccacc 198413
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>emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in linkage group 1, complete
              sequence
          Length = 201673

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    ctgctggacgctgctgttga 367
              ||||||||||||||||||||
Sbjct: 161466 ctgctggacgctgctgttga 161485



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    ctgctggacgctgctgttga 367
              ||||||||||||||||||||
Sbjct: 133283 ctgctggacgctgctgttga 133302
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>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184696

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 615    atctatgttcttcaaaacaa 634
              ||||||||||||||||||||
Sbjct: 124702 atctatgttcttcaaaacaa 124721
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>gb|AC148528.15| Medicago truncatula clone mth2-53h4, complete sequence
          Length = 141776

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     acagtacaacacaaggcaaa 97
              ||||||||||||||||||||
Sbjct: 133350 acagtacaacacaaggcaaa 133331
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>gb|AC055769.4|AC055769 Arabidopsis thaliana chromosome 1 BAC T9G5 genomic sequence, complete
             sequence
          Length = 33913

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 567   atccacacttttcagtgtacctac 590
             |||||||||||||| |||||||||
Sbjct: 33645 atccacacttttcattgtacctac 33622
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>gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome
            I, complete sequence
          Length = 92219

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 567  atccacacttttcagtgtacctac 590
            |||||||||||||| |||||||||
Sbjct: 4762 atccacacttttcattgtacctac 4739
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>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC
             RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid
             U35B5 (from Lawrence Livermore), complete sequence
          Length = 259202

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   tgatgatagaaatgttctgg 299
             ||||||||||||||||||||
Sbjct: 63705 tgatgatagaaatgttctgg 63686
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 311     aagctcgtttgaacaagctcatac 334
               |||||||||||| |||||||||||
Sbjct: 4129648 aagctcgtttgaccaagctcatac 4129671
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>gb|DQ278875.1| Danio rerio thyroglobulin mRNA, partial cds
          Length = 1011

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  tgcccaaaattcagccatgt 47
           ||||||||||||||||||||
Sbjct: 655 tgcccaaaattcagccatgt 636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,374,908
Number of Sequences: 3902068
Number of extensions: 5374908
Number of successful extensions: 87448
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87281
Number of HSP's gapped (non-prelim): 166
length of query: 668
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 645
effective length of database: 17,143,297,704
effective search space: 11057427019080
effective search space used: 11057427019080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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