ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags39j17 |
|---|---|
| Clone Library Name | barley_pub |
>ACL1_SCHPO (Q9P7W3) Probable ATP-citrate synthase subunit 1 (EC 2.3.3.8)| (ATP-citrate (pro-S-)-lyase 1) (Citrate cleavage enzyme subunit 1) Length = 615 Score = 133 bits (334), Expect = 6e-31 Identities = 63/120 (52%), Positives = 82/120 (68%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYAHAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIXXXX 516 GHRIKSR+N D RV+L++ Y +FPS K ++YA+ VE T SK +NL++NVDG I Sbjct: 494 GHRIKSRNNPDLRVELVKGYVKKNFPSTKLLDYALAVENVTTSKKDNLILNVDGCIAVCF 553 Query: 515 XXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 336 + +E +E + +G LNG+FVL RSIGLIGH DQKRL+ PLYRHPW+D LY Sbjct: 554 VDLLRNCGAFTLEEANEYINLGILNGMFVLGRSIGLIGHHLDQKRLRAPLYRHPWDDFLY 613
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 132 bits (332), Expect = 1e-30 Identities = 61/120 (50%), Positives = 81/120 (67%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYAHAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIXXXX 516 GHR+KS +N D RVQ+L+ Y HFP+ ++YA++VE T SK NL++NVDG I Sbjct: 974 GHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPNLILNVDGLIGVAF 1033 Query: 515 XXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 336 +++E DE ++IG LNG+FVL RS+G IGH DQKRLKQ LYRHPW+D+ Y Sbjct: 1034 VDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1093
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 130 bits (327), Expect = 4e-30 Identities = 61/120 (50%), Positives = 81/120 (67%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYAHAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIXXXX 516 GHR+KS +N D RVQ+L+ + HFP+ ++YA++VE T SK NL++NVDG I Sbjct: 964 GHRVKSINNPDMRVQILKDFVKQHFPATPLLDYALEVEKITTSKKPNLILNVDGFIGVAF 1023 Query: 515 XXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 336 +++E DE V+IG LNG+FVL RS+G IGH DQKRLKQ LYRHPW+D+ Y Sbjct: 1024 VDMLRNCGSFTREEADEYVDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1083
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 130 bits (326), Expect = 5e-30 Identities = 61/120 (50%), Positives = 81/120 (67%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYAHAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIXXXX 516 GHR+KS +N D RVQ+L+ + HFP+ ++YA++VE T SK NL++NVDG I Sbjct: 973 GHRVKSINNPDMRVQILKDFVKQHFPATPLLDYALEVEKITTSKKPNLILNVDGFIGVAF 1032 Query: 515 XXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 336 +++E DE V+IG LNG+FVL RS+G IGH DQKRLKQ LYRHPW+D+ Y Sbjct: 1033 VDMLRNCGSFTREEADEYVDIGALNGVFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1092
>ACL1_SORMA (O93988) ATP-citrate synthase subunit 1 (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase 1) (Citrate cleavage enzyme subunit 1) Length = 674 Score = 129 bits (324), Expect = 8e-30 Identities = 62/120 (51%), Positives = 82/120 (68%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYAHAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIXXXX 516 GHR+KSR+N D RV+L+++Y A FPS K ++YA+ VET T SK +NL++NVDG I Sbjct: 534 GHRVKSRNNPDLRVELVKEYVKAKFPSSKLLDYALAVETVTTSKKDNLILNVDGCIAVCF 593 Query: 515 XXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 336 S +E ++ + +G LNGLFVL RSIGLI H DQKRL+ LYRHPW+D+ Y Sbjct: 594 VDLLRNCGAFSTEEAEDYLSMGVLNGLFVLGRSIGLIAHYLDQKRLRTGLYRHPWDDITY 653
>ACL1_NEUCR (Q8X097) Probable ATP-citrate synthase subunit 1 (EC 2.3.3.8)| (ATP-citrate (pro-S-)-lyase 1) (Citrate cleavage enzyme subunit 1) Length = 670 Score = 128 bits (322), Expect = 1e-29 Identities = 61/120 (50%), Positives = 82/120 (68%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYAHAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIXXXX 516 GHR+KSR+N D RV+L+++Y A FPS K ++YA+ VE+ T SK +NL++NVDG I Sbjct: 530 GHRVKSRNNPDLRVELVKEYVKAKFPSTKLLDYALAVESVTTSKKDNLILNVDGCIAVCF 589 Query: 515 XXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 336 S +E ++ + +G LNGLFVL RSIGLI H DQKRL+ LYRHPW+D+ Y Sbjct: 590 VDLLRNCGAFSTEEAEDYLSMGVLNGLFVLGRSIGLIAHYLDQKRLRTGLYRHPWDDITY 649
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 122 bits (306), Expect = 1e-27 Identities = 62/123 (50%), Positives = 79/123 (64%), Gaps = 3/123 (2%) Frame = -1 Query: 695 GHRIKSRDNRDKRVQLLQKYA---HAHFPSVKYMEYAVQVETYTLSKANNLVMNVDGAIX 525 GHR+KS +N DKRV++L+++A EYA++VE T +K NL++NVDGAI Sbjct: 974 GHRVKSINNPDKRVEILKRFAMDKKEFAQETPLFEYALEVEKITTAKKPNLILNVDGAIA 1033 Query: 524 XXXXXXXXXXXXXSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWED 345 +KQE +E +EIG LNGLFVL RSIG IGH DQ RLKQ LYRHPW+D Sbjct: 1034 ILFVDILRHSGMFTKQEAEETIEIGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRHPWDD 1093 Query: 344 VLY 336 + Y Sbjct: 1094 ISY 1096
>S28A1_PIG (O62667) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside| cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) Length = 647 Score = 30.8 bits (68), Expect = 4.1 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = +1 Query: 223 WFSIPPCVVPS*ILCSYARFYFYGVHTGGIHYMVP-------HLV*RTSSQG*R*SGCLS 381 W S+ ++ + LC +A F G+ GG+ MVP +V R G C+S Sbjct: 524 WISVRAEILTTYALCGFANFSSIGIMLGGLTSMVPQRKGDFSQIVLRALCTG----ACVS 579 Query: 382 LFWSKVCPIRPIERASTKSPLRYPISTISSIS 477 L + V I + R + + + +T+SS S Sbjct: 580 LVNACVAGILYVPRGAEVDCVSFLNTTLSSSS 611
>S28A1_RABIT (Q9MZT2) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside| cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) Length = 658 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 223 WFSIPPCVVPS*ILCSYARFYFYGVHTGGIHYMVPH 330 W S+ V+ + LC +A G+ GG+ MVPH Sbjct: 520 WISVRAEVITTFSLCGFANLSSIGITLGGLTSMVPH 555
>S28A1_RAT (Q62674) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside| cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) Length = 648 Score = 30.4 bits (67), Expect = 5.4 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +1 Query: 184 WLNEKNETNFHL*WFSIPPCVVPS*ILCSYARFYFYGVHTGGIHYMVP 327 WL +K + W S+ ++ + LC +A F G+ GG+ +VP Sbjct: 518 WLGDKKQ------WISVRAEILTTYALCGFANFSSIGIMLGGLTSLVP 559
>FUT9_RAT (Q99JB3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 9) (FUCT-IX) Length = 359 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 102 QTFGEYCNDYDAVPHHKTXIIYCQFRNKIY 13 Q FGEY ND + +P T Y F N I+ Sbjct: 220 QAFGEYVNDKNLIPTISTCKFYLSFENSIH 249
>FUT9_PANTR (Q659L0) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 9) (FUCT-IX) Length = 359 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 102 QTFGEYCNDYDAVPHHKTXIIYCQFRNKIY 13 Q FGEY ND + +P T Y F N I+ Sbjct: 220 QAFGEYVNDKNLIPTISTCKFYLSFENSIH 249
>FUT9_MOUSE (O88819) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 9) (FUCT-IX) Length = 359 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 102 QTFGEYCNDYDAVPHHKTXIIYCQFRNKIY 13 Q FGEY ND + +P T Y F N I+ Sbjct: 220 QAFGEYVNDKNLIPTISTCKFYLSFENSIH 249
>FUT9_CANFA (Q659L1) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 9) (FUCT-IX) Length = 359 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 102 QTFGEYCNDYDAVPHHKTXIIYCQFRNKIY 13 Q FGEY ND + +P T Y F N I+ Sbjct: 220 QAFGEYVNDKNLIPTISTCKFYLSFENSIH 249
>TR10A_HUMAN (O00220) Tumor necrosis factor receptor superfamily member 10A| precursor (Death receptor 4) (TNF-related apoptosis-inducing ligand receptor 1) (TRAIL receptor 1) (TRAIL-R1) (CD261 antigen) Length = 468 Score = 30.0 bits (66), Expect = 7.0 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +2 Query: 557 CWPLTGCRSQPEQRTPCT 610 C P T C+S E+R+PCT Sbjct: 164 CLPCTACKSDEEERSPCT 181
>THYG_RAT (P06882) Thyroglobulin precursor| Length = 2768 Score = 29.6 bits (65), Expect = 9.1 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 13/123 (10%) Frame = -2 Query: 691 TGSKAETTGTSECSFY-----RNMLTH----TSLQSSTWSTLFRLRPTPCQRPTIWL*ML 539 T S + T +C + RN+ + +L+S W TL P CQRP +W M Sbjct: 1234 TASSSGVTTVQQCQLFCRQGLRNVFSPGPLICNLESQRWVTL--PLPRACQRPQLWQTMQ 1291 Query: 538 TVRSARFSWIFFLGVECSASKRLTRL*RSGILMDSLC----LHVQLA*LGTPLTRRGSSN 371 T A F + G CS ++D L +Q+ GT ++R N Sbjct: 1292 T--QAHFQLLLPPGKMCSIDYSGLLQAFQVFILDELITRGFCQIQVKTFGTLVSRTVCDN 1349 Query: 370 HSI 362 SI Sbjct: 1350 SSI 1352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,178,452 Number of Sequences: 219361 Number of extensions: 2008660 Number of successful extensions: 4727 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4724 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
