ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39j14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 36 0.11
2FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 34 0.33
3PPNK_TREPA (O83455) Probable inorganic polyphosphate/ATP-NAD kin... 30 4.7

>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = -2

Query: 646 DDTPVTVHTVDSVLLPPELFG 584
           D+TPV + TVD+VLLP ELFG
Sbjct: 314 DETPVVIFTVDNVLLPAELFG 334



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -2

Query: 646 DDTPVTVHTVDSVLLPPELFG 584
           D TPV + TVD+VLLP ELFG
Sbjct: 313 DATPVVIFTVDNVLLPAELFG 333



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>PPNK_TREPA (O83455) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 305

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
 Frame = -2

Query: 313 ALCRSRRRVTPLIRPS----------VRHRALVLFSSGHA*CDAPRSRL*VLEPLKCSSE 164
           ALC S R   P++ PS          +RH+  VL   GH  C        +     CS+ 
Sbjct: 216 ALCLSNR---PVVVPSSGVVRIKVLSMRHKETVLSVDGHELCTLQEEDQLLASRSSCSAR 272

Query: 163 VVILLPGLDHLGDCDNLPW 107
           +V   P + +   C  L W
Sbjct: 273 LVFCTPHVFYHALCSKLAW 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,769,376
Number of Sequences: 219361
Number of extensions: 923826
Number of successful extensions: 2453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2453
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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