| Clone Name | rbags39j11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF475114.1| Triticum aestivum 60s ribosomal protein L21 mRNA, partial cds Length = 519 Score = 842 bits (425), Expect = 0.0 Identities = 486/507 (95%) Strand = Plus / Minus Query: 130 ctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaat 189 |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| || Sbjct: 519 ctagtaaccaccnttgagatcgttgacgacgtcgtacgggatgggggtgaccgtctcgat 460 Query: 190 ggtggtgccctccaccatgaacccgggcttgggccctgctggctgcctctttgtgctgat 249 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 459 ggtggtgccctccaccatgaacccaggcttgggccctgctggctgcctcttcgtgctgat 400 Query: 250 gacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctggag 309 |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 399 gacctcgccacgcgccttggcctccgcnttcagcttgtcattgttgagtttcctctggag 340 Query: 310 gaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttctt 369 ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 339 gaactcctcgttgcacctggatggctgcacgtgctccacacgcacatggatcctcttctt 280 Query: 370 gatgatccggttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgtt 429 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 gatgatcctgttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgtt 220 Query: 430 ccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgcc 489 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 ccagacgcggccggtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgcc 160 Query: 490 gttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgc 549 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 159 gttcaccttgacgtcgacgtgctccccgaccttgtaggtgcgcaggtaggtggtgagcgg 100 Query: 550 gatgtaccccttcttccggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagccc 609 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 99 gatgtaccccttcttacggaagggccgcgcgaacaggtcgcgcgtccgcgaccgcagccc 40 Query: 610 gtgccccgccggcatcttccccttcct 636 ||||||||||||||||||||||||||| Sbjct: 39 gtgccccgccggcatcttccccttcct 13
>ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribosomal protein L21 (OSJNBa0006L06.3), mRNA Length = 783 Score = 597 bits (301), Expect = e-167 Identities = 450/497 (90%), Gaps = 2/497 (0%) Strand = Plus / Minus Query: 130 ctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaat 189 ||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| | Sbjct: 572 ctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctccag 513 Query: 190 ggtggtgccctccaccatgaacccgggcttggg-ccctgctggctgcctctttgtgctga 248 || | ||||| |||||||| |||||||| || |||||| ||||||||||| ||||||| Sbjct: 512 tgttgcaccctcaaccatgaagccgggcttaggaccctgc-ggctgcctcttcgtgctga 454 Query: 249 tgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgga 308 ||||||||||||| |||||||| || ||||| |||| ||| || |||| |||||| || Sbjct: 453 tgacctcaccacgagccttggcatctgccttgagctggtcgttcttgatcttcctcaggc 394 Query: 309 ggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttct 368 ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 393 ggaactcctcagtgcacctggatggctgcacatgctccacacggacatggatcctcttcc 334 Query: 369 tgatgatccggttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgt 428 |||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 tgataatgcggttcccaacctgcttgttgatctcgacgccgatggcgcgcttggtgacgt 274 Query: 429 tccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgc 488 ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 273 tccagacgcggccggtgcggccgtggtagaacttgtgcggcatccccttgtgcacggcgc 214 Query: 489 cgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtg 548 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | Sbjct: 213 cgttcaccttgacgtcgacgtgctcgccgatcttgtaggtgcggaggtaggtggtgagcg 154 Query: 549 cgatgtaccccttcttccggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcc 608 ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 153 ggatgtaccccttcttcctgaacggccgcgcgaacaggtcgcgcgtccgcgcacgcagcc 94 Query: 609 cgtgccccgccggcatc 625 |||| |||||||||||| Sbjct: 93 cgtggcccgccggcatc 77
>gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (RPL21) mRNA, complete cds Length = 753 Score = 581 bits (293), Expect = e-162 Identities = 448/497 (90%), Gaps = 2/497 (0%) Strand = Plus / Minus Query: 130 ctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaat 189 ||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| | Sbjct: 511 ctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctccag 452 Query: 190 ggtggtgccctccaccatgaacccgggcttggg-ccctgctggctgcctctttgtgctga 248 || | ||||| |||||||| || ||||| || |||||| ||||||||||| ||||||| Sbjct: 451 tgttgcaccctcaaccatgaagccaggcttaggaccctgc-ggctgcctcttcgtgctga 393 Query: 249 tgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgga 308 ||||||||||||| |||||||| || ||||| |||| ||| || |||| |||||| || Sbjct: 392 tgacctcaccacgagccttggcatctgccttgagctggtcgttcttgatcttcctcaggc 333 Query: 309 ggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttct 368 ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 332 ggaactcctcagtgcacctggatggctgcacatgctccacacggacatggatcctcttcc 273 Query: 369 tgatgatccggttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgt 428 |||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 tgataatgcggttcccaacctgcttgttgatctcgacgccgatggcgcgcttggtgacgt 213 Query: 429 tccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgc 488 ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 212 tccagacgcggccggtgcggccgtggtagaacttgtgcggcatccccttgtgcacggcgc 153 Query: 489 cgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtg 548 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | Sbjct: 152 cgttcaccttgacgtcgacgtgctcgccgatcttgtaggtgcggaggtaggtggtgagcg 93 Query: 549 cgatgtaccccttcttccggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcc 608 ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 92 ggatgtaccccttcttcctgaacggccgcgcgaacaggtcgcgcgtccgcgcacgcagcc 33 Query: 609 cgtgccccgccggcatc 625 |||| ||||||||||| Sbjct: 32 cgtggtccgccggcatc 16
>gb|AY105020.1| Zea mays PCO098402 mRNA sequence Length = 784 Score = 496 bits (250), Expect = e-137 Identities = 439/502 (87%) Strand = Plus / Minus Query: 128 ctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctca 187 ||||||||||| ||||||||||||||||| ||||| || || || || ||||||||||| Sbjct: 596 ctctagtaaccgcccttgagatcgttgaccacatcataaggaataggagtgactgtctcg 537 Query: 188 atggtggtgccctccaccatgaacccgggcttgggccctgctggctgcctctttgtgctg 247 | || | ||||| |||||||| || || ||||| || | ||||||||||| |||||| Sbjct: 536 agtgtagcaccctcaaccatgaagccaggtttgggtcccacaggctgcctcttggtgctg 477 Query: 248 atgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgg 307 || |||||||| ||||||||||| |||||||| |||| |||||| ||| ||||||| || Sbjct: 476 atcacctcaccgcgggccttggcatccgccttgagctggtcattcttggctttcctcagg 417 Query: 308 aggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttc 367 |||||||||| |||| | ||| |||||||| ||||| || ||||||||||||| |||| Sbjct: 416 cggaactcctctgtgcaacgggagggctgcacatgctccacgcggacatggatccgcttc 357 Query: 368 ttgatgatccggttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacg 427 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ctgatgatgcggccattaacctgcttgttgatctcgacgccgatggcgcgcttggtgacg 297 Query: 428 ttccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcg 487 |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 296 ttccagacgctcccggtgcggccgtggtagaacttgtgcggcatgcccttgtgcacggcg 237 Query: 488 ccgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagt 547 ||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||| Sbjct: 236 ccgttaaccttgacgtcgacgtagtcgccgatcttgtaggtgcgcaggtacgtggtgagt 177 Query: 548 gcgatgtaccccttcttccggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagc 607 | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 176 gggatgtaccccttcttgcggaagggccgcgcgaacaggtcgcgggtccgcgaccgcagc 117 Query: 608 ccgtgccccgccggcatcttcc 629 |||||||||||||||||||||| Sbjct: 116 ccgtgccccgccggcatcttcc 95
>gb|BT016206.1| Zea mays clone Contig39 mRNA sequence Length = 748 Score = 480 bits (242), Expect = e-132 Identities = 437/502 (87%) Strand = Plus / Minus Query: 128 ctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctca 187 ||||||||||| ||||||||||||||||| ||||| || || || || ||||||||||| Sbjct: 560 ctctagtaaccgcccttgagatcgttgaccacatcataaggaataggagtgactgtctcg 501 Query: 188 atggtggtgccctccaccatgaacccgggcttgggccctgctggctgcctctttgtgctg 247 | || | ||||| |||||||| || || ||||| || | ||||||||||| |||||| Sbjct: 500 agtgtagcaccctcaaccatgaagccaggtttgggtcccacgggctgcctcttggtgctg 441 Query: 248 atgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgg 307 || |||||||| ||| |||||| |||||||| |||| |||||| ||| ||||||| || Sbjct: 440 atcacctcaccgcggagcttggcatccgccttgagctggtcattcttggctttcctcagg 381 Query: 308 aggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttc 367 |||||||||| |||| | ||| |||||||| ||||| |||||||||||||||| |||| Sbjct: 380 cggaactcctctgtgcaacgggagggctgcacatgctccacacggacatggatccgcttc 321 Query: 368 ttgatgatccggttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacg 427 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 ctgatgatgcggccattaacctgcttgttgatctcgacgccgatggcgcgcttggtgacg 261 Query: 428 ttccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcg 487 |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 260 ttccagacgctcccggtgcggccgtggtagaacttgtgcggcatgcccttgtgcacggcg 201 Query: 488 ccgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagt 547 ||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||| Sbjct: 200 ccgttaaccttgacgtcgacgtagtcgccgatcttgtaggtgcgcaggtacgtggtgagc 141 Query: 548 gcgatgtaccccttcttccggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagc 607 | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 140 gggatgtaccccttcttgcggaagggccgcgcgaacaggtcgcgggtccgcgaccgcagc 81 Query: 608 ccgtgccccgccggcatcttcc 629 |||||||||||||||||||||| Sbjct: 80 ccgtgccccgccggcatcttcc 59
>gb|AY107603.1| Zea mays PCO098394 mRNA sequence Length = 965 Score = 424 bits (214), Expect = e-115 Identities = 430/502 (85%) Strand = Plus / Minus Query: 128 ctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctca 187 ||||||||||| ||||||||||| || || ||||| || || || || || || |||||| Sbjct: 614 ctctagtaaccccccttgagatcatttaccacatcatagggaataggagtaacggtctca 555 Query: 188 atggtggtgccctccaccatgaacccgggcttgggccctgctggctgcctctttgtgctg 247 | || | ||||| |||||||| || || ||||| || | ||||||||||| |||||| Sbjct: 554 agtgtagcaccctcaaccatgaagccaggtttgggtcccacaggctgcctcttggtgctg 495 Query: 248 atgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgg 307 || ||||| |||||| ||||||| || |||| |||| || || ||| ||||||| | Sbjct: 494 atcacctcgccacggtccttggcatcaaccttgagctgatcgttcttggctttcctcaag 435 Query: 308 aggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttc 367 |||||||||| |||| | ||| |||||||| ||||| |||||||||||||| | |||| Sbjct: 434 cggaactcctctgtgcaacgggagggctgcacatgctccacacggacatggatacgcttc 375 Query: 368 ttgatgatccggttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacg 427 ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 374 ctgatgatgcggccattaacctgcttgttgatctcaacgccgatggcgcgcttggtgacg 315 Query: 428 ttccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcg 487 ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 314 ttccagacgcgaccggtgcggccgtggtagaacttgtgcggcatgcccttgtgcacggcg 255 Query: 488 ccgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagt 547 |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| Sbjct: 254 ccgttcaccttgacgtcgacgtagtcgccgatcttgtaggtgcgcaggtacgtggtgagc 195 Query: 548 gcgatgtaccccttcttccggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagc 607 | |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 194 gggatgtaacccttcttgcggaacggccgcgcgaacaggtcgcgggtccgcgaccgaagc 135 Query: 608 ccgtgccccgccggcatcttcc 629 |||||||||||||||||||||| Sbjct: 134 ccgtgccccgccggcatcttcc 113
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 381 bits (192), Expect = e-102 Identities = 228/240 (95%) Strand = Plus / Plus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 15073 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 15132 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 15133 cggccgtggtagaacttgtgcggcatccccttgtgcacggcgccgttcaccttgacgtcg 15192 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 ||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||| Sbjct: 15193 acgtgctcgccgatcttgtaggtgcggaggtaggtggtgagcgggatgtaccccttcttc 15252 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 | |||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 15253 ctgaacggccgcgcgaacaggtcgcgcgtccgcgcacgcagcccgtggcccgccggcatc 15312 Score = 224 bits (113), Expect = 3e-55 Identities = 220/253 (86%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 130 ctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaat 189 ||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| | Sbjct: 14082 ctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctccag 14141 Query: 190 ggtggtgccctccaccatgaacccgggcttggg-ccctgctggctgcctctttgtgctga 248 || | ||||| |||||||| |||||||| || |||||| ||||||||||| ||||||| Sbjct: 14142 tgttgcaccctcaaccatgaagccgggcttaggaccctgc-ggctgcctcttcgtgctga 14200 Query: 249 tgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgga 308 ||||||||||||| |||||||| || ||||| |||| ||| || |||| |||||| || Sbjct: 14201 tgacctcaccacgagccttggcatctgccttgagctggtcgttcttgatcttcctcaggc 14260 Query: 309 ggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttct 368 ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 14261 ggaactcctcagtgcacctggatggctgcacatgctccacacggacatggatcctcttcc 14320 Query: 369 tgatgatccggtt 381 |||| || ||||| Sbjct: 14321 tgataatgcggtt 14333
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 381 bits (192), Expect = e-102 Identities = 228/240 (95%) Strand = Plus / Plus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 16670556 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 16670615 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 16670616 cggccgtggtagaacttgtgcggcatccccttgtgcacggcgccgttcaccttgacgtcg 16670675 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 ||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||| Sbjct: 16670676 acgtgctcgccgatcttgtaggtgcggaggtaggtggtgagcgggatgtaccccttcttc 16670735 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 | |||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 16670736 ctgaacggccgcgcgaacaggtcgcgcgtccgcgcacgcagcccgtggcccgccggcatc 16670795 Score = 224 bits (113), Expect = 3e-55 Identities = 220/253 (86%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 130 ctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaat 189 ||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| | Sbjct: 16669565 ctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctccag 16669624 Query: 190 ggtggtgccctccaccatgaacccgggcttggg-ccctgctggctgcctctttgtgctga 248 || | ||||| |||||||| |||||||| || |||||| ||||||||||| ||||||| Sbjct: 16669625 tgttgcaccctcaaccatgaagccgggcttaggaccctgc-ggctgcctcttcgtgctga 16669683 Query: 249 tgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgga 308 ||||||||||||| |||||||| || ||||| |||| ||| || |||| |||||| || Sbjct: 16669684 tgacctcaccacgagccttggcatctgccttgagctggtcgttcttgatcttcctcaggc 16669743 Query: 309 ggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttct 368 ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 16669744 ggaactcctcagtgcacctggatggctgcacatgctccacacggacatggatcctcttcc 16669803 Query: 369 tgatgatccggtt 381 |||| || ||||| Sbjct: 16669804 tgataatgcggtt 16669816
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 381 bits (192), Expect = e-102 Identities = 228/240 (95%) Strand = Plus / Plus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 16679596 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 16679655 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 16679656 cggccgtggtagaacttgtgcggcatccccttgtgcacggcgccgttcaccttgacgtcg 16679715 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 ||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||| Sbjct: 16679716 acgtgctcgccgatcttgtaggtgcggaggtaggtggtgagcgggatgtaccccttcttc 16679775 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 | |||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 16679776 ctgaacggccgcgcgaacaggtcgcgcgtccgcgcacgcagcccgtggcccgccggcatc 16679835 Score = 224 bits (113), Expect = 3e-55 Identities = 220/253 (86%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 130 ctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaat 189 ||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| | Sbjct: 16678605 ctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctccag 16678664 Query: 190 ggtggtgccctccaccatgaacccgggcttggg-ccctgctggctgcctctttgtgctga 248 || | ||||| |||||||| |||||||| || |||||| ||||||||||| ||||||| Sbjct: 16678665 tgttgcaccctcaaccatgaagccgggcttaggaccctgc-ggctgcctcttcgtgctga 16678723 Query: 249 tgacctcaccacgggccttggcctccgccttcagcttgtcattgttgagtttcctctgga 308 ||||||||||||| |||||||| || ||||| |||| ||| || |||| |||||| || Sbjct: 16678724 tgacctcaccacgagccttggcatctgccttgagctggtcgttcttgatcttcctcaggc 16678783 Query: 309 ggaactcctcattgcacctggatggctgcacgtgctcaacacggacatggatcctcttct 368 ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 16678784 ggaactcctcagtgcacctggatggctgcacatgctccacacggacatggatcctcttcc 16678843 Query: 369 tgatgatccggtt 381 |||| || ||||| Sbjct: 16678844 tgataatgcggtt 16678856
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 367 bits (185), Expect = 3e-98 Identities = 230/245 (93%) Strand = Plus / Minus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2247017 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 2246958 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2246957 cggccgtggtagaacttgtgcggcatgcccttgtgcacggcgccgttcaccttgacgtcg 2246898 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 |||| ||||||| |||||| || | ||||||||||||||| | |||||| |||||||| Sbjct: 2246897 acgtaatcgccgatcttgtacgtcctcaggtaggtggtgagcgggatgtaacccttcttg 2246838 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 2246837 cggaacggccgcgcgaagaggtcgcgcgtccgcgcccgcagcccgtgccccgccggcatc 2246778 Query: 626 ttccc 630 ||||| Sbjct: 2246777 ttccc 2246773 Score = 184 bits (93), Expect = 3e-43 Identities = 228/273 (83%) Strand = Plus / Minus Query: 118 gaaacaagcgctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgt 177 ||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 2248346 gaaacaagcattctagtaaccacccttgagatcattgaccacatcatacggaatgggggt 2248287 Query: 178 gactgtctcaatggtggtgccctccaccatgaacccgggcttgggccctgctggctgcct 237 || ||||| | || | ||||| |||||||| || || ||||| || | ||||| || Sbjct: 2248286 aacagtctccagcgtagcaccctcaaccatgaaaccaggtttgggtccctcgggctgtct 2248227 Query: 238 ctttgtgctgatgacctcaccacgggccttggcctccgccttcagcttgtcattgttgag 297 ||| |||||||| |||||||||||||||||||| || ||||| |||| || || |||| Sbjct: 2248226 cttggtgctgataacctcaccacgggccttggcatcagccttgagctgatcgttcttgat 2248167 Query: 298 tttcctctggaggaactcctcattgcacctggatggctgcacgtgctcaacacggacatg 357 ||||||| || ||| |||||| |||||||||||||||| || ||||| ||||||||||| Sbjct: 2248166 tttcctcaggcggagctcctcggtgcacctggatggctggacatgctccacacggacatg 2248107 Query: 358 gatcctcttcttgatgatccggttgccgacctg 390 |||||||||| ||||||| ||||| |||||||| Sbjct: 2248106 gatcctcttcctgatgatgcggttaccgacctg 2248074
>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11, complete sequence Length = 156647 Score = 367 bits (185), Expect = 3e-98 Identities = 230/245 (93%) Strand = Plus / Minus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 137311 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 137252 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 137251 cggccgtggtagaacttgtgcggcatgcccttgtgcacggcgccgttcaccttgacgtcg 137192 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 |||| ||||||| |||||| || | ||||||||||||||| | |||||| |||||||| Sbjct: 137191 acgtaatcgccgatcttgtacgtcctcaggtaggtggtgagcgggatgtaacccttcttg 137132 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 137131 cggaacggccgcgcgaagaggtcgcgcgtccgcgcccgcagcccgtgccccgccggcatc 137072 Query: 626 ttccc 630 ||||| Sbjct: 137071 ttccc 137067 Score = 184 bits (93), Expect = 3e-43 Identities = 228/273 (83%) Strand = Plus / Minus Query: 118 gaaacaagcgctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgt 177 ||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 138640 gaaacaagcattctagtaaccacccttgagatcattgaccacatcatacggaatgggggt 138581 Query: 178 gactgtctcaatggtggtgccctccaccatgaacccgggcttgggccctgctggctgcct 237 || ||||| | || | ||||| |||||||| || || ||||| || | ||||| || Sbjct: 138580 aacagtctccagcgtagcaccctcaaccatgaaaccaggtttgggtccctcgggctgtct 138521 Query: 238 ctttgtgctgatgacctcaccacgggccttggcctccgccttcagcttgtcattgttgag 297 ||| |||||||| |||||||||||||||||||| || ||||| |||| || || |||| Sbjct: 138520 cttggtgctgataacctcaccacgggccttggcatcagccttgagctgatcgttcttgat 138461 Query: 298 tttcctctggaggaactcctcattgcacctggatggctgcacgtgctcaacacggacatg 357 ||||||| || ||| |||||| |||||||||||||||| || ||||| ||||||||||| Sbjct: 138460 tttcctcaggcggagctcctcggtgcacctggatggctggacatgctccacacggacatg 138401 Query: 358 gatcctcttcttgatgatccggttgccgacctg 390 |||||||||| ||||||| ||||| |||||||| Sbjct: 138400 gatcctcttcctgatgatgcggttaccgacctg 138368
>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence Length = 134821 Score = 367 bits (185), Expect = 3e-98 Identities = 230/245 (93%) Strand = Plus / Plus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 79039 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 79098 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 79099 cggccgtggtagaacttgtgcggcatgcccttgtgcacggcgccgttcaccttgacgtcg 79158 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 |||| ||||||| |||||| || | ||||||||||||||| | |||||| |||||||| Sbjct: 79159 acgtaatcgccgatcttgtacgtcctcaggtaggtggtgagcgggatgtaacccttcttg 79218 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 79219 cggaacggccgcgcgaagaggtcgcgcgtccgcgcccgcagcccgtgccccgccggcatc 79278 Query: 626 ttccc 630 ||||| Sbjct: 79279 ttccc 79283 Score = 184 bits (93), Expect = 3e-43 Identities = 228/273 (83%) Strand = Plus / Plus Query: 118 gaaacaagcgctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgt 177 ||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 77710 gaaacaagcattctagtaaccacccttgagatcattgaccacatcatacggaatgggggt 77769 Query: 178 gactgtctcaatggtggtgccctccaccatgaacccgggcttgggccctgctggctgcct 237 || ||||| | || | ||||| |||||||| || || ||||| || | ||||| || Sbjct: 77770 aacagtctccagcgtagcaccctcaaccatgaaaccaggtttgggtccctcgggctgtct 77829 Query: 238 ctttgtgctgatgacctcaccacgggccttggcctccgccttcagcttgtcattgttgag 297 ||| |||||||| |||||||||||||||||||| || ||||| |||| || || |||| Sbjct: 77830 cttggtgctgataacctcaccacgggccttggcatcagccttgagctgatcgttcttgat 77889 Query: 298 tttcctctggaggaactcctcattgcacctggatggctgcacgtgctcaacacggacatg 357 ||||||| || ||| |||||| |||||||||||||||| || ||||| ||||||||||| Sbjct: 77890 tttcctcaggcggagctcctcggtgcacctggatggctggacatgctccacacggacatg 77949 Query: 358 gatcctcttcttgatgatccggttgccgacctg 390 |||||||||| ||||||| ||||| |||||||| Sbjct: 77950 gatcctcttcctgatgatgcggttaccgacctg 77982
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 367 bits (185), Expect = 3e-98 Identities = 230/245 (93%) Strand = Plus / Minus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2247029 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 2246970 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2246969 cggccgtggtagaacttgtgcggcatgcccttgtgcacggcgccgttcaccttgacgtcg 2246910 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 |||| ||||||| |||||| || | ||||||||||||||| | |||||| |||||||| Sbjct: 2246909 acgtaatcgccgatcttgtacgtcctcaggtaggtggtgagcgggatgtaacccttcttg 2246850 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 2246849 cggaacggccgcgcgaagaggtcgcgcgtccgcgcccgcagcccgtgccccgccggcatc 2246790 Query: 626 ttccc 630 ||||| Sbjct: 2246789 ttccc 2246785 Score = 184 bits (93), Expect = 3e-43 Identities = 228/273 (83%) Strand = Plus / Minus Query: 118 gaaacaagcgctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgt 177 ||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 2248358 gaaacaagcattctagtaaccacccttgagatcattgaccacatcatacggaatgggggt 2248299 Query: 178 gactgtctcaatggtggtgccctccaccatgaacccgggcttgggccctgctggctgcct 237 || ||||| | || | ||||| |||||||| || || ||||| || | ||||| || Sbjct: 2248298 aacagtctccagcgtagcaccctcaaccatgaaaccaggtttgggtccctcgggctgtct 2248239 Query: 238 ctttgtgctgatgacctcaccacgggccttggcctccgccttcagcttgtcattgttgag 297 ||| |||||||| |||||||||||||||||||| || ||||| |||| || || |||| Sbjct: 2248238 cttggtgctgataacctcaccacgggccttggcatcagccttgagctgatcgttcttgat 2248179 Query: 298 tttcctctggaggaactcctcattgcacctggatggctgcacgtgctcaacacggacatg 357 ||||||| || ||| |||||| |||||||||||||||| || ||||| ||||||||||| Sbjct: 2248178 tttcctcaggcggagctcctcggtgcacctggatggctggacatgctccacacggacatg 2248119 Query: 358 gatcctcttcttgatgatccggttgccgacctg 390 |||||||||| ||||||| ||||| |||||||| Sbjct: 2248118 gatcctcttcctgatgatgcggttaccgacctg 2248086
>dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I10, full insert sequence Length = 2007 Score = 367 bits (185), Expect = 3e-98 Identities = 230/245 (93%) Strand = Plus / Minus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 319 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggccggtg 260 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 259 cggccgtggtagaacttgtgcggcatgcccttgtgcacggcgccgttcaccttgacgtcg 200 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttc 565 |||| ||||||| |||||| || | ||||||||||||||| | |||||| |||||||| Sbjct: 199 acgtaatcgccgatcttgtacgtcctcaggtaggtggtgagcgggatgtaacccttcttg 140 Query: 566 cggaacggccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 139 cggaacggccgcgcgaagaggtcgcgcgtccgcgcccgcagcccgtgccccgccggcatc 80 Query: 626 ttccc 630 ||||| Sbjct: 79 ttccc 75 Score = 184 bits (93), Expect = 3e-43 Identities = 228/273 (83%) Strand = Plus / Minus Query: 118 gaaacaagcgctctagtaaccacccttgagatcgttgacgacatcgtacgggatgggtgt 177 ||||||||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 1648 gaaacaagcattctagtaaccacccttgagatcattgaccacatcatacggaatgggggt 1589 Query: 178 gactgtctcaatggtggtgccctccaccatgaacccgggcttgggccctgctggctgcct 237 || ||||| | || | ||||| |||||||| || || ||||| || | ||||| || Sbjct: 1588 aacagtctccagcgtagcaccctcaaccatgaaaccaggtttgggtccctcgggctgtct 1529 Query: 238 ctttgtgctgatgacctcaccacgggccttggcctccgccttcagcttgtcattgttgag 297 ||| |||||||| |||||||||||||||||||| || ||||| |||| || || |||| Sbjct: 1528 cttggtgctgataacctcaccacgggccttggcatcagccttgagctgatcgttcttgat 1469 Query: 298 tttcctctggaggaactcctcattgcacctggatggctgcacgtgctcaacacggacatg 357 ||||||| || ||| |||||| |||||||||||||||| || ||||| ||||||||||| Sbjct: 1468 tttcctcaggcggagctcctcggtgcacctggatggctggacatgctccacacggacatg 1409 Query: 358 gatcctcttcttgatgatccggttgccgacctg 390 |||||||||| ||||||| ||||| |||||||| Sbjct: 1408 gatcctcttcctgatgatgcggttaccgacctg 1376
>gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence Length = 526 Score = 301 bits (152), Expect = 2e-78 Identities = 258/292 (88%), Gaps = 1/292 (0%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgctt- 393 ||||| ||||| |||||||||||||| | |||| ||||||| || ||||||||| Sbjct: 328 tgcacatgctccacacggacatggatacgcttcctgatgatgcgcccattgacctgcttt 269 Query: 394 gttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtg 453 ||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 268 gttgacctcgacgccgatggcgcgcttggtgacgttccagacgcgaccggtgcggccgtg 209 Query: 454 gtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctc 513 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || Sbjct: 208 gtagaacttgtgcggcatccccttgtggacggcgccgttcaccttgacatcgacgtaatc 149 Query: 514 gccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacgg 573 ||||| |||||||||||| |||||||||||||| | |||||| |||||||| ||||| || Sbjct: 148 gccgatcttgtaggtgcggaggtaggtggtgagcgggatgtagcccttcttgcggaaggg 89 Query: 574 ccgcgcgaacaggtcgcgcgtccgcgaccggagcccgtgccccgccggcatc 625 |||||||| ||||||||||||||||| || || ||||| || ||||||||| Sbjct: 88 gcgcgcgaagaggtcgcgcgtccgcgagcgcaggccgtggccagccggcatc 37 Score = 48.1 bits (24), Expect = 0.039 Identities = 71/84 (84%), Gaps = 2/84 (2%) Strand = Plus / Minus Query: 140 cccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaa-tggtggtgcc 198 ||||||||||| ||||| ||||| || ||||||| || || ||||||| || || |||| Sbjct: 525 cccttgagatcattgaccacatcatatgggatgga-gttacggtctcaaatgttgttgcc 467 Query: 199 ctccaccatgaacccgggcttggg 222 ||| |||||||| ||||||||||| Sbjct: 466 ctcgaccatgaagccgggcttggg 443
>ref|NM_100841.2| Arabidopsis thaliana structural constituent of ribosome AT1G09690 mRNA, complete cds Length = 755 Score = 170 bits (86), Expect = 4e-39 Identities = 356/446 (79%) Strand = Plus / Minus Query: 140 cccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccc 199 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||| | || Sbjct: 526 cccttgagatcgttgacgacatcgtacgggattggagtgacagtctccaaggtcattcct 467 Query: 200 tccaccatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 || |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 466 tcgaccatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 407 Query: 260 cgggccttggcctccgccttcagcttgtcattgttgagtttcctctggaggaactcctca 319 ||| ||||| | ||||| |||| ||||| || |||||| | |||||||||| Sbjct: 406 ttggctttggctgcagccttgagctcatcattcttcttcttcctcagcttgaactcctca 347 Query: 320 ttgcacctggatggctgcacgtgctcaacacggacatggatcctcttcttgatgatccgg 379 || || ||| ||||||| ||||| ||||| ||||| ||||||||| | ||||||| | Sbjct: 346 gcacatcttgattgctgcacatgctccacacgcacatgaatcctcttccttatgatcctg 287 Query: 380 ttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcgg 439 ||||| | ||| ||||||| || || |||| |||||| || ||||||||||||| || Sbjct: 286 ttgccaatctgtttgttgacttcaacaccgacggcgcgtttagtgacgttccagatacga 227 Query: 440 cccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttg 499 || || || ||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct: 226 ccagtacgaccgtggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttc 167 Query: 500 acgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtacccc 559 || ||||||| |||||||||||| |||| | |||||| || | ||||| ||||| ||| Sbjct: 166 acatcgacgtaatcgccgaccttgaaggttctcaggtaagtcgagagtggaatgtaaccc 107 Query: 560 ttcttccggaacggccgcgcgaacag 585 ||||||| ||| |||| ||||||||| Sbjct: 106 ttcttcctgaatggcctcgcgaacag 81
>gb|AY081656.1| Arabidopsis thaliana similar to ribosomal protein L21 (At1g09690) mRNA, complete cds Length = 538 Score = 170 bits (86), Expect = 4e-39 Identities = 356/446 (79%) Strand = Plus / Minus Query: 140 cccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccc 199 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||| | || Sbjct: 485 cccttgagatcgttgacgacatcgtacgggattggagtgacagtctccaaggtcattcct 426 Query: 200 tccaccatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 || |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 425 tcgaccatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 366 Query: 260 cgggccttggcctccgccttcagcttgtcattgttgagtttcctctggaggaactcctca 319 ||| ||||| | ||||| |||| ||||| || |||||| | |||||||||| Sbjct: 365 ttggctttggctgcagccttgagctcatcattcttcttcttcctcagcttgaactcctca 306 Query: 320 ttgcacctggatggctgcacgtgctcaacacggacatggatcctcttcttgatgatccgg 379 || || ||| ||||||| ||||| ||||| ||||| ||||||||| | ||||||| | Sbjct: 305 gcacatcttgattgctgcacatgctccacacgcacatgaatcctcttccttatgatcctg 246 Query: 380 ttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcgg 439 ||||| | ||| ||||||| || || |||| |||||| || ||||||||||||| || Sbjct: 245 ttgccaatctgtttgttgacttcaacaccgacggcgcgtttagtgacgttccagatacga 186 Query: 440 cccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttg 499 || || || ||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct: 185 ccagtacgaccgtggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttc 126 Query: 500 acgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtacccc 559 || ||||||| |||||||||||| |||| | |||||| || | ||||| ||||| ||| Sbjct: 125 acatcgacgtaatcgccgaccttgaaggttctcaggtaagtcgagagtggaatgtaaccc 66 Query: 560 ttcttccggaacggccgcgcgaacag 585 ||||||| ||| |||| ||||||||| Sbjct: 65 ttcttcctgaatggcctcgcgaacag 40
>gb|AY059923.1| Arabidopsis thaliana Similar to ribosomal protein L21 (At1g09690; F21M12.8) mRNA, complete cds Length = 665 Score = 170 bits (86), Expect = 4e-39 Identities = 356/446 (79%) Strand = Plus / Minus Query: 140 cccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccc 199 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||| | || Sbjct: 526 cccttgagatcgttgacgacatcgtacgggattggagtgacagtctccaaggtcattcct 467 Query: 200 tccaccatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 || |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 466 tcgaccatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 407 Query: 260 cgggccttggcctccgccttcagcttgtcattgttgagtttcctctggaggaactcctca 319 ||| ||||| | ||||| |||| ||||| || |||||| | |||||||||| Sbjct: 406 ttggctttggctgcagccttgagctcatcattcttcttcttcctcagcttgaactcctca 347 Query: 320 ttgcacctggatggctgcacgtgctcaacacggacatggatcctcttcttgatgatccgg 379 || || ||| ||||||| ||||| ||||| ||||| ||||||||| | ||||||| | Sbjct: 346 gcacatcttgattgctgcacatgctccacacgcacatgaatcctcttccttatgatcctg 287 Query: 380 ttgccgacctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcgg 439 ||||| | ||| ||||||| || || |||| |||||| || ||||||||||||| || Sbjct: 286 ttgccaatctgtttgttgacttcaacaccgacggcgcgtttagtgacgttccagatacga 227 Query: 440 cccgtgcggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttg 499 || || || ||||||||||||||||| ||||| |||||||||| || || |||||||| Sbjct: 226 ccagtacgaccgtggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttc 167 Query: 500 acgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtacccc 559 || ||||||| |||||||||||| |||| | |||||| || | ||||| ||||| ||| Sbjct: 166 acatcgacgtaatcgccgaccttgaaggttctcaggtaagtcgagagtggaatgtaaccc 107 Query: 560 ttcttccggaacggccgcgcgaacag 585 ||||||| ||| |||| ||||||||| Sbjct: 106 ttcttcctgaatggcctcgcgaacag 81
>dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT11C13, TM0029a, complete sequence Length = 53909 Score = 161 bits (81), Expect = 4e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 ||||||||||||| ||||||||||||||||||||||||||| |||||||| || || ||| Sbjct: 14959 acctgcttgttgacctcgacgccgatggcgcgcttggtgacattccagacacgaccggtg 14900 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcg 505 ||||| |||||||||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 14899 cggccatggtagaacttgtgaggcatacccttgtggacggcgccgttaactctgacgtcg 14840 Query: 506 acgtgctcgccgaccttgtaggtgcgcaggtaggtggtgag 546 |||| ||||||| ||| || || |||||||||||||| Sbjct: 14839 acgtagtcgccgatgcggtacgtacggaggtaggtggtgag 14799 Score = 87.7 bits (44), Expect = 5e-14 Identities = 152/188 (80%) Strand = Plus / Minus Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcaccacgg 262 |||||||| || || |||||||| || ||||||||||| |||||||| |||||||| | Sbjct: 15798 accatgaaacctggtttgggcccagcaggctgcctcttggtgctgatcacctcacccttg 15739 Query: 263 gccttggcctccgccttcagcttgtcattgttgagtttcctctggaggaactcctcattg 322 ||||| ||||| |||||||||| ||||| || | ||||| | ||||||||||| || Sbjct: 15738 gccttagcctcggccttcagctgatcattcttaaccttcctgagacggaactcctcagtg 15679 Query: 323 cacctggatggctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttg 382 || | ||||||| ||| ||||| ||||| ||||| || |||||| |||| |||||||| Sbjct: 15678 caacgggatggcatcacatgctccacacgcacatgaattctcttcctgataatccggttt 15619 Query: 383 ccgacctg 390 || ||||| Sbjct: 15618 cccacctg 15611
>emb|BX814291.1|CNS0ADUZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 660 Score = 137 bits (69), Expect = 5e-29 Identities = 207/253 (81%) Strand = Plus / Minus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgct 392 ||||||| ||||| ||||| ||||| ||||||||| | ||||||| |||||| | ||| | Sbjct: 320 gctgcacatgctccacacgcacatgaatcctcttccttatgatcctgttgccaatctgtt 261 Query: 393 tgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgt 452 ||| || || || |||| |||||| || ||||||||||||| || || || || |||| Sbjct: 260 tgtcgacttcaacaccgacggcgcgtttagtgacgttccagatacgaccagtacgaccgt 201 Query: 453 ggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgct 512 ||||||||||||| ||||| |||||||||| || || |||||||| || ||||||| | Sbjct: 200 ggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatcgacgtaat 141 Query: 513 cgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacg 572 ||||||||||| |||| | |||||| || | ||||| ||||| |||||||||| ||| | Sbjct: 140 cgccgaccttgaaggttctcaggtaagtcgagagtggaatgtaacccttcttcctgaatg 81 Query: 573 gccgcgcgaacag 585 ||| ||||||||| Sbjct: 80 gcctcgcgaacag 68 Score = 71.9 bits (36), Expect = 3e-09 Identities = 99/120 (82%) Strand = Plus / Minus Query: 140 cccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccc 199 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||| | || Sbjct: 513 cccttgagatcgttgacgacatcgtacgggattggagtgacagtctccaaggtcattcct 454 Query: 200 tccaccatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 || |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 453 tcgaccatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 394
>ref|NM_100831.2| Arabidopsis thaliana structural constituent of ribosome AT1G09590 mRNA, complete cds Length = 675 Score = 129 bits (65), Expect = 1e-26 Identities = 206/253 (81%) Strand = Plus / Minus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgct 392 ||||||| ||||| ||||| ||||| ||||||||| | ||||||| ||| || | ||| | Sbjct: 306 gctgcacatgctccacacgaacatgaatcctcttccttatgatcctgttcccaatctgtt 247 Query: 393 tgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgt 452 |||||| || || |||| ||||||||||||||||||||||| || || || || || | Sbjct: 246 tgttgacttcaacaccgacggcgcgcttggtgacgttccagatacgaccagtacgaccat 187 Query: 453 ggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgct 512 ||||||||||||| ||||| |||||||||| || || |||||||| || ||||||| | Sbjct: 186 ggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatcgacgtaat 127 Query: 513 cgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacg 572 ||||||||||| |||| | |||||| || | || | ||||| |||||||||| ||| | Sbjct: 126 cgccgaccttgaaggtcctcaggtaagtcgatagaggaatgtaacccttcttcctgaaag 67 Query: 573 gccgcgcgaacag 585 ||| ||||||||| Sbjct: 66 gcctcgcgaacag 54 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 143 ttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccctcc 202 ||||||||||||||||||||||| ||||| || ||||| ||||| | ||| | || || Sbjct: 496 ttgagatcgttgacgacatcgtaggggattggagtgacagtctccaaggtcattccttcg 437 Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 436 accatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 380
>gb|BT000775.1| Arabidopsis thaliana clone RAFL04-10-C15 (R11681) putative 60S ribosomal protein L21 (At1g09590) mRNA, complete cds Length = 672 Score = 129 bits (65), Expect = 1e-26 Identities = 206/253 (81%) Strand = Plus / Minus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgct 392 ||||||| ||||| ||||| ||||| ||||||||| | ||||||| ||| || | ||| | Sbjct: 306 gctgcacatgctccacacgaacatgaatcctcttccttatgatcctgttcccaatctgtt 247 Query: 393 tgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgt 452 |||||| || || |||| ||||||||||||||||||||||| || || || || || | Sbjct: 246 tgttgacttcaacaccgacggcgcgcttggtgacgttccagatacgaccagtacgaccat 187 Query: 453 ggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgct 512 ||||||||||||| ||||| |||||||||| || || |||||||| || ||||||| | Sbjct: 186 ggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatcgacgtaat 127 Query: 513 cgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacg 572 ||||||||||| |||| | |||||| || | || | ||||| |||||||||| ||| | Sbjct: 126 cgccgaccttgaaggtcctcaggtaagtcgatagaggaatgtaacccttcttcctgaaag 67 Query: 573 gccgcgcgaacag 585 ||| ||||||||| Sbjct: 66 gcctcgcgaacag 54 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 143 ttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccctcc 202 ||||||||||||||||||||||| ||||| || ||||| ||||| | ||| | || || Sbjct: 496 ttgagatcgttgacgacatcgtaggggattggagtgacagtctccaaggtcattccttcg 437 Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 436 accatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 380
>gb|AY059119.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g09590) mRNA, complete cds Length = 526 Score = 129 bits (65), Expect = 1e-26 Identities = 206/253 (81%) Strand = Plus / Minus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgct 392 ||||||| ||||| ||||| ||||| ||||||||| | ||||||| ||| || | ||| | Sbjct: 292 gctgcacatgctccacacgaacatgaatcctcttccttatgatcctgttcccaatctgtt 233 Query: 393 tgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgt 452 |||||| || || |||| ||||||||||||||||||||||| || || || || || | Sbjct: 232 tgttgacttcaacaccgacggcgcgcttggtgacgttccagatacgaccagtacgaccat 173 Query: 453 ggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgct 512 ||||||||||||| ||||| |||||||||| || || |||||||| || ||||||| | Sbjct: 172 ggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatcgacgtaat 113 Query: 513 cgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacg 572 ||||||||||| |||| | |||||| || | || | ||||| |||||||||| ||| | Sbjct: 112 cgccgaccttgaaggtcctcaggtaagtcgatagaggaatgtaacccttcttcctgaaag 53 Query: 573 gccgcgcgaacag 585 ||| ||||||||| Sbjct: 52 gcctcgcgaacag 40 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 143 ttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccctcc 202 ||||||||||||||||||||||| ||||| || ||||| ||||| | ||| | || || Sbjct: 482 ttgagatcgttgacgacatcgtaggggattggagtgacagtctccaaggtcattccttcg 423 Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 422 accatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 366
>gb|AF370227.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g09590) mRNA, complete cds Length = 674 Score = 129 bits (65), Expect = 1e-26 Identities = 206/253 (81%) Strand = Plus / Minus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgct 392 ||||||| ||||| ||||| ||||| ||||||||| | ||||||| ||| || | ||| | Sbjct: 306 gctgcacatgctccacacgaacatgaatcctcttccttatgatcctgttcccaatctgtt 247 Query: 393 tgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgt 452 |||||| || || |||| ||||||||||||||||||||||| || || || || || | Sbjct: 246 tgttgacttcaacaccgacggcgcgcttggtgacgttccagatacgaccagtacgaccat 187 Query: 453 ggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgct 512 ||||||||||||| ||||| |||||||||| || || |||||||| || ||||||| | Sbjct: 186 ggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatcgacgtaat 127 Query: 513 cgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacg 572 ||||||||||| |||| | |||||| || | || | ||||| |||||||||| ||| | Sbjct: 126 cgccgaccttgaaggtcctcaggtaagtcgatagaggaatgtaacccttcttcctgaaag 67 Query: 573 gccgcgcgaacag 585 ||| ||||||||| Sbjct: 66 gcctcgcgaacag 54 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 143 ttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccctcc 202 ||||||||||||||||||||||| ||||| || ||||| ||||| | ||| | || || Sbjct: 496 ttgagatcgttgacgacatcgtaggggattggagtgacagtctccaaggtcattccttcg 437 Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 436 accatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 380
>emb|BX816463.1|CNS0AANS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH4ZD12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 569 Score = 129 bits (65), Expect = 1e-26 Identities = 206/253 (81%) Strand = Plus / Minus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgct 392 ||||||| ||||| ||||| ||||| ||||||||| | ||||||| ||| || | ||| | Sbjct: 274 gctgcacatgctccacacgaacatgaatcctcttccttatgatcctgttcccaatctgtt 215 Query: 393 tgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgt 452 |||||| || || |||| ||||||||||||||||||||||| || || || || || | Sbjct: 214 tgttgacttcaacaccgacggcgcgcttggtgacgttccagatacgaccagtacgaccat 155 Query: 453 ggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgct 512 ||||||||||||| ||||| |||||||||| || || |||||||| || ||||||| | Sbjct: 154 ggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatcgacgtaat 95 Query: 513 cgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacg 572 ||||||||||| |||| | |||||| || | || | ||||| |||||||||| ||| | Sbjct: 94 cgccgaccttgaaggtcctcaggtaagtcgatagaggaatgtaacccttcttcctgaaag 35 Query: 573 gccgcgcgaacag 585 ||| ||||||||| Sbjct: 34 gcctcgcgaacag 22 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 143 ttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccctcc 202 ||||||||||||||||||||||| ||||| || ||||| ||||| | ||| | || || Sbjct: 464 ttgagatcgttgacgacatcgtaggggattggagtgacagtctccaaggtcattccttcg 405 Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 404 accatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 348
>gb|AF092950.1|AF092950 Cyanophora paradoxa ribosomal protein L21E (rpl21) mRNA, complete cds Length = 486 Score = 125 bits (63), Expect = 2e-25 Identities = 114/131 (87%) Strand = Plus / Minus Query: 350 cggacatggatcctcttcttgatgatccggttgccgacctgcttgttgatctcgacgccg 409 ||||| ||||| | |||||||||||| |||| || |||| ||||||||||||| || ||| Sbjct: 275 cggacgtggatgcgcttcttgatgatgcggtggcggacccgcttgttgatctccacaccg 216 Query: 410 atggcgcgcttggtgacgttccagacgcggcccgtgcggccgtggtagaacttgtgcggc 469 |||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| ||| Sbjct: 215 atggcgcgcttggtcacgttccagacgatgccagtgcggccgtggtagtacttgaagggc 156 Query: 470 atgcccttgtg 480 ||||||||||| Sbjct: 155 atgcccttgtg 145
>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence Length = 146505 Score = 113 bits (57), Expect = 8e-22 Identities = 165/201 (82%) Strand = Plus / Plus Query: 385 gacctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgt 444 |||||| ||||||| || || |||| |||||| || ||||||||||||| || || || Sbjct: 24077 gacctgtttgttgacttcaacaccgacggcgcgtttagtgacgttccagatacgaccagt 24136 Query: 445 gcggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtc 504 || ||||||||||||||||| ||||| |||||||||| || || |||||||| || || Sbjct: 24137 acgaccgtggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatc 24196 Query: 505 gacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttctt 564 ||||| |||||||||||| |||| | |||||| || | ||||| ||||| |||||||| Sbjct: 24197 gacgtaatcgccgaccttgaaggttctcaggtaagtcgagagtggaatgtaacccttctt 24256 Query: 565 ccggaacggccgcgcgaacag 585 || ||| |||| ||||||||| Sbjct: 24257 cctgaatggcctcgcgaacag 24277 Score = 73.8 bits (37), Expect = 7e-10 Identities = 193/245 (78%) Strand = Plus / Plus Query: 140 cccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccc 199 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||| | || Sbjct: 23303 cccttgagatcgttgacgacatcgtacgggattggagtgacagtctccaaggtcattcct 23362 Query: 200 tccaccatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 || |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 23363 tcgaccatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 23422 Query: 260 cgggccttggcctccgccttcagcttgtcattgttgagtttcctctggaggaactcctca 319 ||| ||||| | ||||| |||| ||||| || |||||| | |||||||||| Sbjct: 23423 ttggctttggctgcagccttgagctcatcattcttcttcttcctcagcttgaactcctca 23482 Query: 320 ttgcacctggatggctgcacgtgctcaacacggacatggatcctcttcttgatgatccgg 379 || || ||| ||||||| ||||| ||||| ||||| ||||||||| | ||||||| | Sbjct: 23483 gcacatcttgattgctgcacatgctccacacgcacatgaatcctcttccttatgatcctg 23542 Query: 380 ttgcc 384 ||||| Sbjct: 23543 ttgcc 23547
>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains phyA marker, complete sequence Length = 95865 Score = 105 bits (53), Expect = 2e-19 Identities = 164/201 (81%) Strand = Plus / Minus Query: 385 gacctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgt 444 |||||| ||||||| || || |||| ||||||||||||||||||||||| || || || Sbjct: 88391 gacctgtttgttgacttcaacaccgacggcgcgcttggtgacgttccagatacgaccagt 88332 Query: 445 gcggccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtc 504 || || |||||||||||||| ||||| |||||||||| || || |||||||| || || Sbjct: 88331 acgaccatggtagaacttgtgaggcatacccttgtggatcgcaccattcaccttcacatc 88272 Query: 505 gacgtgctcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttctt 564 ||||| |||||||||||| |||| | |||||| || | || | ||||| |||||||| Sbjct: 88271 gacgtaatcgccgaccttgaaggtcctcaggtaagtcgatagaggaatgtaacccttctt 88212 Query: 565 ccggaacggccgcgcgaacag 585 || ||| |||| ||||||||| Sbjct: 88211 cctgaaaggcctcgcgaacag 88191 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 143 ttgagatcgttgacgacatcgtacgggatgggtgtgactgtctcaatggtggtgccctcc 202 ||||||||||||||||||||||| ||||| || ||||| ||||| | ||| | || || Sbjct: 89196 ttgagatcgttgacgacatcgtaggggattggagtgacagtctccaaggtcattccttcg 89137 Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacca 259 |||||||| || || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct: 89136 accatgaatcctggtttgggtcctttaggctgtctcttggtgctgatggtctcacca 89080 Score = 44.1 bits (22), Expect = 0.61 Identities = 106/134 (79%) Strand = Plus / Plus Query: 452 tggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgc 511 ||||||||||| || || || |||||||| | || || || |||||||| ||||||| Sbjct: 44727 tggtagaacttatgaggaatacccttgtgaatagctccattaaccttgacatcgacgtaa 44786 Query: 512 tcgccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaac 571 |||||||||||| |||| ||||| |||| ||||| || || |||||||||| ||| Sbjct: 44787 tcgccgaccttgaaggttatgaggtaagtggagagtggaatataacccttcttcctgaat 44846 Query: 572 ggccgcgcgaacag 585 || | ||||||||| Sbjct: 44847 ggtctcgcgaacag 44860
>ref|NM_104563.3| Arabidopsis thaliana structural constituent of ribosome AT1G57660 mRNA, complete cds Length = 715 Score = 85.7 bits (43), Expect = 2e-13 Identities = 199/251 (79%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| ||| Sbjct: 337 tgcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttg 278 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 |||| || || || | ||| ||||| ||||| ||||||| ||| || || || || ||| Sbjct: 277 ttgacttcaacaccaacggcacgcttagtgacattccagatgcgaccagtacgaccatgg 218 Query: 455 tagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcg 514 |||||||| || ||||| |||||||||| || || || |||||||| ||||||| ||| Sbjct: 217 tagaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcg 158 Query: 515 ccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggc 574 ||||||||| |||| | ||||| |||| ||||| || || |||||||||| ||| || Sbjct: 157 ccgaccttgaaggttctgaggtaagtggagagtggaatataacccttcttcctgaatggt 98 Query: 575 cgcgcgaacag 585 | ||||||||| Sbjct: 97 ctcgcgaacag 87 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 538 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 486
>gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660) mRNA, complete cds Length = 526 Score = 85.7 bits (43), Expect = 2e-13 Identities = 199/251 (79%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| ||| Sbjct: 290 tgcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttg 231 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 |||| || || || | ||| ||||| ||||| ||||||| ||| || || || || ||| Sbjct: 230 ttgacttcaacaccaacggcacgcttagtgacattccagatgcgaccagtacgaccatgg 171 Query: 455 tagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcg 514 |||||||| || ||||| |||||||||| || || || |||||||| ||||||| ||| Sbjct: 170 tagaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcg 111 Query: 515 ccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggc 574 ||||||||| |||| | ||||| |||| ||||| || || |||||||||| ||| || Sbjct: 110 ccgaccttgaaggttctgaggtaagtggagagtggaatataacccttcttcctgaatggt 51 Query: 575 cgcgcgaacag 585 | ||||||||| Sbjct: 50 ctcgcgaacag 40 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 491 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 439
>gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660) mRNA, complete cds Length = 681 Score = 85.7 bits (43), Expect = 2e-13 Identities = 199/251 (79%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| ||| Sbjct: 337 tgcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttg 278 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 |||| || || || | ||| ||||| ||||| ||||||| ||| || || || || ||| Sbjct: 277 ttgacttcaacaccaacggcacgcttagtgacattccagatgcgaccagtacgaccatgg 218 Query: 455 tagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcg 514 |||||||| || ||||| |||||||||| || || || |||||||| ||||||| ||| Sbjct: 217 tagaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcg 158 Query: 515 ccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggc 574 ||||||||| |||| | ||||| |||| ||||| || || |||||||||| ||| || Sbjct: 157 ccgaccttgaaggttctgaggtaagtggagagtggaatataacccttcttcctgaatggt 98 Query: 575 cgcgcgaacag 585 | ||||||||| Sbjct: 97 ctcgcgaacag 87 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 538 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 486
>gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete sequence Length = 627 Score = 85.7 bits (43), Expect = 2e-13 Identities = 199/251 (79%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| ||| Sbjct: 334 tgcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttg 275 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 |||| || || || | ||| ||||| ||||| ||||||| ||| || || || || ||| Sbjct: 274 ttgacttcaacaccaacggcacgcttagtgacattccagatgcgaccagtacgaccatgg 215 Query: 455 tagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcg 514 |||||||| || ||||| |||||||||| || || || |||||||| ||||||| ||| Sbjct: 214 tagaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcg 155 Query: 515 ccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggc 574 ||||||||| |||| | ||||| |||| ||||| || || |||||||||| ||| || Sbjct: 154 ccgaccttgaaggttctgaggtaagtggagagtggaatataacccttcttcctgaatggt 95 Query: 575 cgcgcgaacag 585 | ||||||||| Sbjct: 94 ctcgcgaacag 84 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 535 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 483
>ref|NM_104579.3| Arabidopsis thaliana structural constituent of ribosome AT1G57860 mRNA, complete cds Length = 669 Score = 77.8 bits (39), Expect = 4e-11 Identities = 198/251 (78%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| ||| Sbjct: 328 tgcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttg 269 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 |||| || || || | ||| || || ||||| ||||||| ||| || || || || ||| Sbjct: 268 ttgacttcaacaccaacggcacgtttagtgacattccagatgcgaccagtacgaccatgg 209 Query: 455 tagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcg 514 |||||||| || ||||| |||||||||| || || || |||||||| ||||||| ||| Sbjct: 208 tagaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcg 149 Query: 515 ccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggc 574 ||||||||| |||| | ||||| |||| ||||| || || |||||||||| ||| || Sbjct: 148 ccgaccttgaaggttctgaggtaagtggagagtggaatataacccttcttcctgaatggt 89 Query: 575 cgcgcgaacag 585 | ||||||||| Sbjct: 88 ctcgcgaacag 78 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 529 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 477
>gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds Length = 495 Score = 77.8 bits (39), Expect = 4e-11 Identities = 198/251 (78%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| ||| Sbjct: 290 tgcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttg 231 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 |||| || || || | ||| || || ||||| ||||||| ||| || || || || ||| Sbjct: 230 ttgacttcaacaccaacggcacgtttagtgacattccagatgcgaccagtacgaccatgg 171 Query: 455 tagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcg 514 |||||||| || ||||| |||||||||| || || || |||||||| ||||||| ||| Sbjct: 170 tagaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcg 111 Query: 515 ccgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggc 574 ||||||||| |||| | ||||| |||| ||||| || || |||||||||| ||| || Sbjct: 110 ccgaccttgaaggttctgaggtaagtggagagtggaatataacccttcttcctgaatggt 51 Query: 575 cgcgcgaacag 585 | ||||||||| Sbjct: 50 ctcgcgaacag 40 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 491 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 439
>emb|AJ131099.1|PAB131099 Picea abies microsatellite RNA, clone PAAG5, 5' end Length = 1129 Score = 75.8 bits (38), Expect = 2e-10 Identities = 119/146 (81%) Strand = Plus / Minus Query: 335 tgcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttg 394 ||||| ||||||| || ||||| || ||||||||||| ||| ||| | ||||| ||| Sbjct: 332 tgcacatgctcaattcgtacatgaattctcttcttgataatcttgttacgaacctgtttg 273 Query: 395 ttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtgg 454 || || ||||||||||| || ||||||||||| |||||||| || ||||| || ||| Sbjct: 272 ttcatttcgacgccgattgctcgcttggtgacattccagacaacaccggtgcgaccatgg 213 Query: 455 tagaacttgtgcggcatgcccttgtg 480 ||||||||||| ||||| |||||||| Sbjct: 212 tagaacttgtgaggcatacccttgtg 187
>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete sequence Length = 90448 Score = 75.8 bits (38), Expect = 2e-10 Identities = 137/170 (80%) Strand = Plus / Minus Query: 416 cgcttggtgacgttccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgccc 475 ||||| ||||| ||||||| ||| || || || || ||||||||||| || ||||| ||| Sbjct: 46418 cgcttagtgacattccagatgcgaccagtacgaccatggtagaacttatgaggcataccc 46359 Query: 476 ttgtggacggcgccgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcagg 535 ||||||| || || || |||||||| ||||||| |||||||||||| |||| | ||| Sbjct: 46358 ttgtggatagctccattaaccttgacatcgacgtaatcgccgaccttgaaggttctgagg 46299 Query: 536 taggtggtgagtgcgatgtaccccttcttccggaacggccgcgcgaacag 585 || |||| ||||| || || |||||||||| ||| || | ||||||||| Sbjct: 46298 taagtggagagtggaatataacccttcttcctgaatggtctcgcgaacag 46249 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 47003 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 46951
>emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB62ZA08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 674 Score = 75.8 bits (38), Expect = 2e-10 Identities = 197/250 (78%) Strand = Plus / Minus Query: 336 gcacgtgctcaacacggacatggatcctcttcttgatgatccggttgccgacctgcttgt 395 |||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || | ||| |||| Sbjct: 295 gcacatgctccacacgcacatgtatcctcttccttatgattctgttcccaatctgtttgt 236 Query: 396 tgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtgcggccgtggt 455 ||| || || || | ||| ||||| ||||| ||||||| ||| || || || || |||| Sbjct: 235 tgacttcaacaccaacggcacgcttagtgacattccagatgcgaccagtacgaccatggt 176 Query: 456 agaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgacgtgctcgc 515 ||||||| || ||||| |||||||||| || || || |||||||| ||||||| |||| Sbjct: 175 agaacttatgaggcatacccttgtggatagctccattaaccttgacatcgacgtaatcgc 116 Query: 516 cgaccttgtaggtgcgcaggtaggtggtgagtgcgatgtaccccttcttccggaacggcc 575 |||||||| |||| | ||||| |||| || || || || |||||||||| ||| || | Sbjct: 115 cgaccttgaaggttctgaggtaagtggagattggaatataacccttcttcctgaatggtc 56 Query: 576 gcgcgaacag 585 ||||||||| Sbjct: 55 tcgcgaacag 46 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 497 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 445
>gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12K22 genomic sequence, complete sequence Length = 43985 Score = 71.9 bits (36), Expect = 3e-09 Identities = 132/164 (80%) Strand = Plus / Minus Query: 422 gtgacgttccagacgcggcccgtgcggccgtggtagaacttgtgcggcatgcccttgtgg 481 ||||| ||||||| ||| || || || || ||||||||||| || ||||| ||||||||| Sbjct: 5736 gtgacattccagatgcgaccagtacgaccatggtagaacttatgaggcatacccttgtgg 5677 Query: 482 acggcgccgttcaccttgacgtcgacgtgctcgccgaccttgtaggtgcgcaggtaggtg 541 | || || || |||||||| ||||||| |||||||||||| |||| | ||||| ||| Sbjct: 5676 atagctccattaaccttgacatcgacgtaatcgccgaccttgaaggttctgaggtaagtg 5617 Query: 542 gtgagtgcgatgtaccccttcttccggaacggccgcgcgaacag 585 | ||||| || || |||||||||| ||| || | ||||||||| Sbjct: 5616 gagagtggaatataacccttcttcctgaatggtctcgcgaacag 5573 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 6323 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 6271
>emb|BX841874.1|CNS09Y44 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 658 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 134 taaccacccttgagatcgttgacgacatcgtacgggatgggtgtgactgtctc 186 ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct: 533 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctc 481 Score = 52.0 bits (26), Expect = 0.003 Identities = 66/78 (84%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 452 tggtagaacttgtgcggcatgcccttgtggacggcg-ccgttcaccttgacgtcgacgtg 510 ||||||||||| || ||||| |||||||||| ||| || || |||||||| ||||||| Sbjct: 209 tggtagaacttatgaggcatacccttgtggatagcgtccattaaccttgacatcgacgta 150 Query: 511 ctcgccgaccttgtaggt 528 |||||||||||| |||| Sbjct: 149 atcgccgaccttgaaggt 132
>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence Length = 38975 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 390 gcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacg 436 ||||||| ||||| || |||||||||||||| ||||||||||||||| Sbjct: 5042 gcttgtttatctccacaccgatggcgcgcttagtgacgttccagacg 4996
>gb|AY310808.1| Nicotiana benthamiana clone 12-130 unknown mRNA Length = 388 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacc 258 ||||||||||| || ||||| ||| || |||||||||||||||||||||||||| Sbjct: 195 accatgaaccctggtttgggtccttgaggttgcctctttgtgctgatgacctcacc 140
>emb|AJ718457.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-11-430, cultivar Bright Yellow 2 Length = 384 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 203 accatgaacccgggcttgggccctgctggctgcctctttgtgctgatgacctcacc 258 ||||||||||| || ||||| ||| || |||||||||||||||||||||||||| Sbjct: 146 accatgaaccctggtttgggtccttgaggttgcctctttgtgctgatgacctcacc 91
>ref|XM_959139.1| Neurospora crassa OR74A hypothetical protein (NCU01948.1) partial mRNA Length = 483 Score = 52.0 bits (26), Expect = 0.003 Identities = 65/78 (83%) Strand = Plus / Minus Query: 448 gccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgac 507 ||||||||||| |||||| | ||| ||||| ||||| || ||||| ||||||| |||||| Sbjct: 177 gccgtggtagaccttgtgggccatacccttctggacagcaccgttgaccttgatgtcgac 118 Query: 508 gtgctcgccgaccttgta 525 | ||||| |||||||| Sbjct: 117 gatgtcgccaaccttgta 100
>ref|XM_329137.1| Neurospora crassa OR74A hypothetical protein (NCU01948.1) partial mRNA Length = 483 Score = 52.0 bits (26), Expect = 0.003 Identities = 65/78 (83%) Strand = Plus / Minus Query: 448 gccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgac 507 ||||||||||| |||||| | ||| ||||| ||||| || ||||| ||||||| |||||| Sbjct: 177 gccgtggtagaccttgtgggccatacccttctggacagcaccgttgaccttgatgtcgac 118 Query: 508 gtgctcgccgaccttgta 525 | ||||| |||||||| Sbjct: 117 gatgtcgccaaccttgta 100
>emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17 Length = 109016 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 138 cacccttgagatcgttgacgacatcgtacgggatgggtgtga 179 ||||||||| ||||||||||||||||| |||||||| |||| Sbjct: 13266 cacccttgaagtcgttgacgacatcgtatgggatgggagtga 13307 Score = 40.1 bits (20), Expect = 9.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 333 gctgcacgtgctcaacacggacatggatcctcttcttgatgatc 376 ||||||| ||||| ||| | ||||||||||||||| | |||||| Sbjct: 13461 gctgcacatgctccacaagaacatggatcctcttccttatgatc 13504
>gb|DQ066307.1| Ixodes scapularis isolate IS-6-12L-52 ribosomal protein L21 mRNA, complete cds Length = 486 Score = 52.0 bits (26), Expect = 0.003 Identities = 53/62 (85%) Strand = Plus / Minus Query: 448 gccgtggtagaacttgtgcggcatgcccttgtggacggcgccgttcaccttgacgtcgac 507 |||||||||||| ||||||||||| ||||| |||| ||| ||||| |||| ||||| || Sbjct: 177 gccgtggtagaatttgtgcggcatacccttttggaaggctccgttgcccttaacgtcaac 118 Query: 508 gt 509 || Sbjct: 117 gt 116
>ref|XM_505036.1| Yarrowia lipolytica CLIB122, YALI0F05522g predicted mRNA Length = 486 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtgga 482 |||||||||||||||||||| ||||| ||||| |||| Sbjct: 179 cggccgtggtagaacttgtggggcatacccttctgga 143
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Plus Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtgga 482 |||||||||||||||||||| ||||| ||||| |||| Sbjct: 825780 cggccgtggtagaacttgtggggcatacccttctgga 825816
>ref|XM_799307.1| Trypanosoma cruzi strain CL Brener ribosomal protein L21E (60S) (Tc00.1047053507251.20) partial mRNA Length = 480 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 440 cccgtgcggccgtggtagaacttgtgcggcat 471 |||||||||||||||||| ||||||| ||||| Sbjct: 185 cccgtgcggccgtggtagtacttgtgtggcat 154
>ref|XM_807657.1| Trypanosoma cruzi strain CL Brener ribosomal protein L21E (60S) (Tc00.1047053506405.149) partial mRNA Length = 480 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 440 cccgtgcggccgtggtagaacttgtgcggcat 471 |||||||||||||||||| ||||||| ||||| Sbjct: 185 cccgtgcggccgtggtagtacttgtgtggcat 154
>emb|AL606756.17| Mouse DNA sequence from clone RP23-265O19 on chromosome 3, complete sequence Length = 193976 Score = 48.1 bits (24), Expect = 0.039 Identities = 27/28 (96%) Strand = Plus / Minus Query: 627 tccccttcctccttgccttctctctccc 654 |||||||||||||| ||||||||||||| Sbjct: 48440 tccccttcctccttcccttctctctccc 48413
>ref|XM_455019.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E23727g predicted mRNA Length = 483 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 452 tggtagaacttgtgcggcatgcccttgtgga 482 |||||||||||||| ||||| |||||||||| Sbjct: 173 tggtagaacttgtgtggcatacccttgtgga 143
>gb|DQ191668.1| Solanum tuberosum 60S ribosomal protein L21-like protein mRNA, complete cds Length = 751 Score = 46.1 bits (23), Expect = 0.15 Identities = 77/95 (81%) Strand = Plus / Minus Query: 386 acctgcttgttgatctcgacgccgatggcgcgcttggtgacgttccagacgcggcccgtg 445 ||||||||||||| || || || | |||||| ||||| || ||||| || || || || Sbjct: 298 acctgcttgttgacttcaacaccaacggcgcgtttggtaacattccaaacacgaccagta 239 Query: 446 cggccgtggtagaacttgtgcggcatgcccttgtg 480 || || |||||||||||||| ||||| |||||||| Sbjct: 238 cgtccatggtagaacttgtgaggcattcccttgtg 204
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Plus Query: 452 tggtagaacttgtgcggcatgcccttgtgga 482 |||||||||||||| ||||| |||||||||| Sbjct: 2101952 tggtagaacttgtgtggcatacccttgtgga 2101982
>ref|NM_190560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 303 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 441 ccgtgcggccgtggtagaacttgtgc 466 |||||||||||||| ||||||||||| Sbjct: 71 ccgtgcggccgtggcagaacttgtgc 46
>gb|AY292616.1| Oikopleura dioica 60S ribosomal protein L21 (RL21) gene, complete cds Length = 578 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 449 ccgtggtagaacttgtgcggcatgcccttgtgga 482 |||||||||| |||||||||||| ||||| |||| Sbjct: 229 ccgtggtagaccttgtgcggcatacccttctgga 196
>ref|XM_570887.1| Cryptococcus neoformans var. neoformans JEC21 60s ribosomal protein l21-a (CNE02170) partial mRNA Length = 559 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 448 gccgtggtagaacttgtgcggcatgccctt 477 |||||||||||||||||| ||||| ||||| Sbjct: 191 gccgtggtagaacttgtggggcataccctt 162
>ref|XM_525315.1| PREDICTED: Pan troglodytes similar to disks large-associated protein 4 isoform a; disks large associated protein 4; SAP90/PSD-95-associated protein 4; PSD-95/SAP90 binding protein 4 (LOC469930), mRNA Length = 4473 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ctcaccacgggccttggcctc 273 ||||||||||||||||||||| Sbjct: 1665 ctcaccacgggccttggcctc 1645
>gb|DQ207854.1| Solanum tuberosum clone 076C12 unknown mRNA Length = 725 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 452 tggtagaacttgtgcggcatgcccttgtg 480 |||||||||||||| ||||| |||||||| Sbjct: 199 tggtagaacttgtgaggcattcccttgtg 171
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ggccgcgcgaacaggtcgcgc 592 ||||||||||||||||||||| Sbjct: 893453 ggccgcgcgaacaggtcgcgc 893473
>ref|NM_014902.2| Homo sapiens discs, large (Drosophila) homolog-associated protein 4 (DLGAP4), transcript variant 1, mRNA Length = 5007 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ctcaccacgggccttggcctc 273 ||||||||||||||||||||| Sbjct: 837 ctcaccacgggccttggcctc 817
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 628 ccccttcctccttgccttctctctc 652 |||||||||||||||| |||||||| Sbjct: 490268 ccccttcctccttgccctctctctc 490292
>ref|XM_534410.2| PREDICTED: Canis familiaris similar to disks large-associated protein 4 isoform b, transcript variant 1 (LOC477219), mRNA Length = 3855 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ctcaccacgggccttggcctc 273 ||||||||||||||||||||| Sbjct: 402 ctcaccacgggccttggcctc 382
>ref|XM_860394.1| PREDICTED: Canis familiaris similar to disks large-associated protein 4 isoform b, transcript variant 4 (LOC477219), mRNA Length = 3846 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ctcaccacgggccttggcctc 273 ||||||||||||||||||||| Sbjct: 402 ctcaccacgggccttggcctc 382
>emb|AL390374.16| Human DNA sequence from clone CTD-2182L9 on chromosome 20 Contains part of a novel gene (KIAA0964) and two CpG islands, complete sequence Length = 65831 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ctcaccacgggccttggcctc 273 ||||||||||||||||||||| Sbjct: 8568 ctcaccacgggccttggcctc 8548
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ggccgcgcgaacaggtcgcgc 592 ||||||||||||||||||||| Sbjct: 2212110 ggccgcgcgaacaggtcgcgc 2212130
>gb|AC008540.6| Homo sapiens chromosome 19 clone CTC-496P20, complete sequence Length = 224931 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 625 cttccccttcctccttgccttctct 649 |||||||||||||||| |||||||| Sbjct: 191763 cttccccttcctccttcccttctct 191739
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 452 tggtagaacttgtgcggcatgcccttgtg 480 |||||||||||||| ||||| |||||||| Sbjct: 163902 tggtagaacttgtgtggcatacccttgtg 163874
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ggccgcgcgaacaggtcgcgc 592 ||||||||||||||||||||| Sbjct: 1785534 ggccgcgcgaacaggtcgcgc 1785554
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 615 ccgccggcatcttccccttcctcct 639 ||||||||| ||||||||||||||| Sbjct: 16111284 ccgccggcagcttccccttcctcct 16111308
>gb|AE004570.1| Pseudomonas aeruginosa PAO1, section 131 of 529 of the complete genome Length = 11398 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 ggcctccgccttcagcttgtc 288 ||||||||||||||||||||| Sbjct: 6089 ggcctccgccttcagcttgtc 6109
>gb|AC114732.5| Homo sapiens BAC clone RP13-1012F16 from 2, complete sequence Length = 91526 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 627 tccccttcctccttgccttctctct 651 |||||||||||||||||||| |||| Sbjct: 69825 tccccttcctccttgccttccctct 69801
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0618D11 Length = 150103 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 615 ccgccggcatcttccccttcctcct 639 ||||||||| ||||||||||||||| Sbjct: 140013 ccgccggcagcttccccttcctcct 140037
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 615 ccgccggcatcttccccttcctcct 639 ||||||||| ||||||||||||||| Sbjct: 16077 ccgccggcagcttccccttcctcct 16101
>dbj|AB023181.1| Homo sapiens mRNA for KIAA0964 protein, partial cds Length = 5007 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ctcaccacgggccttggcctc 273 ||||||||||||||||||||| Sbjct: 837 ctcaccacgggccttggcctc 817
>gb|U95739.1|HSU95739 Human chromosome 16p11.2-p12 BAC clone CIT987SK-224D6 complete sequence Length = 69015 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 625 cttccccttcctccttgccttctct 649 |||||||||||||||| |||||||| Sbjct: 7007 cttccccttcctccttcccttctct 6983
>ref|NM_209960.1| Eremothecium gossypii AEL254Wp (AEL254W), mRNA Length = 483 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 452 tggtagaacttgtgcggcatgcccttgtg 480 |||||||||||||| ||||| |||||||| Sbjct: 173 tggtagaacttgtgtggcatacccttgtg 145
>emb|AL845474.6| Mouse DNA sequence from clone RP23-380N15 on chromosome 2, complete sequence Length = 41316 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 ccttcctccttgccttctctc 650 ||||||||||||||||||||| Sbjct: 8772 ccttcctccttgccttctctc 8792
>emb|AL662780.20| Mouse DNA sequence from clone RP23-375M9 on chromosome 11, complete sequence Length = 203324 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 631 cttcctccttgccttctctctccct 655 ||||||||||||| ||||||||||| Sbjct: 106515 cttcctccttgccatctctctccct 106539
>ref|NM_189018.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1159 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 cccgtgccccgccggcatcttccc 630 ||||||||||||||||||| |||| Sbjct: 281 cccgtgccccgccggcatcatccc 258
>gb|AC129554.13| Mus musculus chromosome 17, clone RP24-358N7, complete sequence Length = 182184 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 cttccccttcctccttgccttctc 648 |||||||||||||||| ||||||| Sbjct: 59765 cttccccttcctccttcccttctc 59742
>gb|AC139043.6| Mus musculus chromosome 3, clone RP23-321I11, complete sequence Length = 194537 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 cccttcctccttgccttctc 648 |||||||||||||||||||| Sbjct: 116826 cccttcctccttgccttctc 116845
>ref|XM_364335.1| Magnaporthe grisea 70-15 hypothetical protein (MG09180.4) partial mRNA Length = 1332 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 acgtcgacgtgctcgccgac 519 |||||||||||||||||||| Sbjct: 437 acgtcgacgtgctcgccgac 456
>ref|XM_877380.1| PREDICTED: Bos taurus similar to tumor necrosis factor (ligand) superfamily, member 15, transcript variant 2 (LOC514239), mRNA Length = 1199 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 gcaggtaggtggtgagtgcg 550 |||||||||||||||||||| Sbjct: 181 gcaggtaggtggtgagtgcg 162
>ref|XM_592054.2| PREDICTED: Bos taurus similar to tumor necrosis factor (ligand) superfamily, member 15, transcript variant 1 (LOC514239), mRNA Length = 1208 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 gcaggtaggtggtgagtgcg 550 |||||||||||||||||||| Sbjct: 181 gcaggtaggtggtgagtgcg 162
>gb|AC119886.7| Mus musculus chromosome 14, clone RP24-218I13, complete sequence Length = 138803 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 638 cttgccttctctctccctgc 657 |||||||||||||||||||| Sbjct: 113349 cttgccttctctctccctgc 113368
>gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 522h13, complete sequence Length = 148334 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 cttccccttcctccttgccttctc 648 |||||||||||||||| ||||||| Sbjct: 132005 cttccccttcctccttcccttctc 131982
>ref|XM_753406.1| Ustilago maydis 521 hypothetical protein (UM02352.1) partial mRNA Length = 516 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 cggccgtggtagaacttgtgcggcatgccctt 477 |||||||||||| ||||||| ||||| ||||| Sbjct: 212 cggccgtggtagtacttgtggggcataccctt 181
>ref|XM_750518.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g12800) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gagatcgttgacgacatcgt 164 |||||||||||||||||||| Sbjct: 510 gagatcgttgacgacatcgt 491
>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence Length = 191814 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 637 ccttgccttctctctccctg 656 |||||||||||||||||||| Sbjct: 30977 ccttgccttctctctccctg 30958
>gb|AC122238.4| Mus musculus BAC clone RP23-143D4 from chromosome 10, complete sequence Length = 188476 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 630 ccttcctccttgccttctctctcc 653 ||||||| |||||||||||||||| Sbjct: 16385 ccttccttcttgccttctctctcc 16362
>gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, complete sequence Length = 230457 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 cccttcctccttgccttctc 648 |||||||||||||||||||| Sbjct: 6707 cccttcctccttgccttctc 6726
>emb|Z83851.17|HS989H11 Human DNA sequence from clone CTA-989H11 on chromosome 22q13.1-13.2, complete sequence Length = 118831 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ttgggccctgctggctgcct 237 |||||||||||||||||||| Sbjct: 65360 ttgggccctgctggctgcct 65341
>emb|AL591521.8| Human DNA sequence from clone RP5-965F6 on chromosome 1 Contains the 5' end of a novel gene and a thioredoxin (TXN) pseudogene, complete sequence Length = 97110 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 cttgtcattgttgagtttcc 302 |||||||||||||||||||| Sbjct: 35963 cttgtcattgttgagtttcc 35982
>emb|AL445470.5| Human DNA sequence from clone RP11-421L10 on chromosome 1 Contains a novel gene, complete sequence Length = 86332 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 cttccccttcctccttgcct 644 |||||||||||||||||||| Sbjct: 19602 cttccccttcctccttgcct 19621
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 gttccagacgcggcccgtgcggcc 450 ||||||| |||||||||||||||| Sbjct: 1119374 gttccagtcgcggcccgtgcggcc 1119351
>emb|AL355522.11| Human DNA sequence from clone RP11-546O15 on chromosome 6 Contains the 3' end of the CLIC5 gene for chloride intracellular channel 5, complete sequence Length = 182982 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gccttcagcttgtcattgtt 294 |||||||||||||||||||| Sbjct: 13227 gccttcagcttgtcattgtt 13208
>emb|AL162726.16| Human DNA sequence from clone RP11-15B24 on chromosome 9 Contains a cytochrome c oxidase III (COIII) (MTCO3) pseudogene, a novel pseudogene and three novel genes, complete sequence Length = 195824 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tgtctcaatggtggtgccct 200 |||||||||||||||||||| Sbjct: 66411 tgtctcaatggtggtgccct 66392
>emb|AL353616.14| Human DNA sequence from clone RP11-274B18 on chromosome 9 Contains the 3' end of the PGM5 gene for phosphoglucomutase 5 (PGMRP), a novel gene (MGC34760), a squamous cell carcinoma antigen recognized by T cell (SART2) pseudogene and 2 novel genes, complete sequence Length = 169993 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttcagcttgtcattgttgag 297 |||||||||||||||||||| Sbjct: 126861 ttcagcttgtcattgttgag 126842
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 cgccgatggcgcgcttggtgacgt 428 ||||| |||||||||||||||||| Sbjct: 249841 cgccgttggcgcgcttggtgacgt 249864
>emb|BX255277.5| Mouse DNA sequence from clone RP23-478B14 on chromosome 11, complete sequence Length = 169765 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 638 cttgccttctctctccctgc 657 |||||||||||||||||||| Sbjct: 148927 cttgccttctctctccctgc 148946
>ref|NM_135006.2| Drosophila melanogaster CG15634-RA (CG15634), mRNA Length = 1444 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 615 ccgccggcatcttccccttcctccttgc 642 |||||||||||||||| |||||||||| Sbjct: 483 ccgccggcatcttccctctcctccttgc 456
>gb|AC104021.5| Homo sapiens chromosome 8, clone RP11-378A12, complete sequence Length = 135998 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tcagcttgtcattgttgagt 298 |||||||||||||||||||| Sbjct: 126504 tcagcttgtcattgttgagt 126485
>gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25A-25A, BAC clone BACR37J18, complete sequence Length = 199916 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 615 ccgccggcatcttccccttcctccttgc 642 |||||||||||||||| |||||||||| Sbjct: 77152 ccgccggcatcttccctctcctccttgc 77179
>gb|AY051954.1| Drosophila melanogaster LD42284 full length cDNA Length = 1449 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 615 ccgccggcatcttccccttcctccttgc 642 |||||||||||||||| |||||||||| Sbjct: 469 ccgccggcatcttccctctcctccttgc 442
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 cccgtgccccgccggcatcttccc 630 ||||||||||||||||||| |||| Sbjct: 25636651 cccgtgccccgccggcatcatccc 25636628
>gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 from the MHC region, complete sequence Length = 192871 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 cttccccttcctccttgccttctc 648 |||||||||||||||| ||||||| Sbjct: 48410 cttccccttcctccttcccttctc 48387
>gb|AC133633.5| Homo sapiens chromosome 8, clone CTD-2517C5, complete sequence Length = 94195 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tcagcttgtcattgttgagt 298 |||||||||||||||||||| Sbjct: 84591 tcagcttgtcattgttgagt 84610
>emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in linkage group 7, complete sequence Length = 226160 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 625 cttccccttcctccttgccttctctctc 652 |||||||| ||||||| ||||||||||| Sbjct: 14674 cttcccctccctccttcccttctctctc 14647
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 cccgtgccccgccggcatcttccc 630 ||||||||||||||||||| |||| Sbjct: 123342 cccgtgccccgccggcatcatccc 123319
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0700D12 Length = 145177 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 cccgtgccccgccggcatcttccc 630 ||||||||||||||||||| |||| Sbjct: 14399 cccgtgccccgccggcatcatccc 14376
>dbj|AK072516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131A13, full insert sequence Length = 1158 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 cccgtgccccgccggcatcttccc 630 ||||||||||||||||||| |||| Sbjct: 281 cccgtgccccgccggcatcatccc 258
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 gcttggtgacgttccagacg 436 |||||||||||||||||||| Sbjct: 1213929 gcttggtgacgttccagacg 1213948
>gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16 of 83 of the complete sequence Length = 330399 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 615 ccgccggcatcttccccttcctccttgc 642 |||||||||||||||| |||||||||| Sbjct: 76910 ccgccggcatcttccctctcctccttgc 76883
>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence Length = 168722 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 637 ccttgccttctctctccctg 656 |||||||||||||||||||| Sbjct: 63651 ccttgccttctctctccctg 63670
>gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163881 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 621 gcatcttccccttcctccttgcct 644 |||||||||||||||||| ||||| Sbjct: 56861 gcatcttccccttcctccatgcct 56838
>gb|AC005807.1|AC005807 Mus musculus chromosome 17 BAC clone citb585c7 from MHC region, complete sequence Length = 65870 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 625 cttccccttcctccttgccttctc 648 |||||||||||||||| ||||||| Sbjct: 17598 cttccccttcctccttcccttctc 17621
>emb|CT030728.6| Mouse DNA sequence from clone RP23-108F2 on chromosome 17, complete sequence Length = 219013 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 625 cttccccttcctccttgccttctc 648 |||||||||||||||| ||||||| Sbjct: 40813 cttccccttcctccttcccttctc 40836
>dbj|AP003072.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-573M3, complete sequence Length = 106000 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 630 ccttcctccttgccttctct 649 |||||||||||||||||||| Sbjct: 67029 ccttcctccttgccttctct 67010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,018,212 Number of Sequences: 3902068 Number of extensions: 5018212 Number of successful extensions: 105590 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104684 Number of HSP's gapped (non-prelim): 889 length of query: 697 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 674 effective length of database: 17,143,297,704 effective search space: 11554582652496 effective search space used: 11554582652496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)