ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39i24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108966.1| Zea mays PCO112928 mRNA sequence 490 e-135
2dbj|AK073511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 369 8e-99
3dbj|AK103992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 299 6e-78
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
6dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
7gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete s... 50 0.010
8gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete s... 50 0.010
9gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 46 0.15
10gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, co... 46 0.15
11ref|NM_121942.2| Arabidopsis thaliana isomerase AT5G19370 mRNA, ... 44 0.59
12emb|AL355608.11| Human DNA sequence from clone RP11-567J2 on chr... 44 0.59
13emb|Z86095.1|ATZ86095 A.thaliana mRNA for peptidyl-prolyl cis-tr... 44 0.59
14gb|AY059127.1| Arabidopsis thaliana putative peptidyl-prolyl cis... 44 0.59
15gb|AF370165.1| Arabidopsis thaliana putative peptidyl-prolyl cis... 44 0.59
16emb|BX829992.1|CNS09YUV Arabidopsis thaliana Full-length cDNA Co... 44 0.59
17gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, comple... 44 0.59
18gb|AY086512.1| Arabidopsis thaliana clone 25533 mRNA, complete s... 44 0.59
19gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24 44 0.59
20gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.59
21ref|XM_649731.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 2.3
22ref|XM_850101.1| PREDICTED: Canis familiaris heparan sulfate pro... 42 2.3
23emb|AL121868.11|HSA541I12 Human DNA sequence from clone RP11-541... 42 2.3
24gb|AC090806.12| Homo sapiens chromosome 8, clone RP11-94A24, com... 42 2.3
25gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome... 42 2.3
26dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 2.3
27dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.3
28dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.3
29gb|AC162792.5| Mus musculus chromosome 7, clone RP24-187H10, com... 40 9.2
30gb|AC109227.12| Mus musculus chromosome 7, clone RP23-396C19, co... 40 9.2
31emb|AL845315.3| Human DNA sequence from clone RP11-642C7 on chro... 40 9.2
32gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence 40 9.2
33emb|CR378666.1| Photobacterium profundum SS9; segment 4/12 40 9.2
34gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, co... 40 9.2
35gb|AC119868.2| Homo sapiens chromosome 18, clone RP11-465I4, com... 40 9.2
36gb|AC103871.2| Homo sapiens chromosome 15, clone RP11-730G13, co... 40 9.2
37gb|AC068254.6| Homo sapiens chromosome 18, clone RP11-543H23, co... 40 9.2
38gb|AC011912.7|AC011912 Homo sapiens chromosome 15 clone RP11-547... 40 9.2
39gb|AC025272.6|AC025272 Homo sapiens chromosome 15 clone RP11-548... 40 9.2
40gb|AC137152.2| Mus musculus BAC clone RP24-269A16 from chromosom... 40 9.2
41dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 9.2
42gb|AC135002.2| Homo sapiens 3 BAC RP11-151I3 (Roswell Park Cance... 40 9.2 
>gb|AY108966.1| Zea mays PCO112928 mRNA sequence
          Length = 1143

 Score =  490 bits (247), Expect = e-135
 Identities = 376/419 (89%)
 Strand = Plus / Minus

                                                                       
Query: 252 attccgcccgcaacattgtaaatcttttggaatccctgtgactgcagccacttggctacc 311
           ||||| ||||||||||||||||  |||| ||| ||||||||||||| ||| || || |||
Sbjct: 941 attccacccgcaacattgtaaacttttttgaaaccctgtgactgcaaccatttagccacc 882

                                                                       
Query: 312 tgcatcgagcgcatgccatggtggcacagaacataagtgtccttttggggattaaattca 371
           ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 881 tgcattgagcgcatgccatggtggcacagaacataagtgtccttttgaggattaaactcg 822

                                                                       
Query: 372 tctgtcatgaccggtccccaggttccaaattggcggagaggtagaactttgaagcctgga 431
           |||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 821 tctgtcataactggtccccaggtcccaaattggcggagcggtagaaccttgaagcctgga 762

                                                                       
Query: 432 agggatgctctctccacttcatcaggctcccgaacatcaatcaattgagcttcttcaata 491
           || || ||| |||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 761 agcgaagctttctccacttcatcaggctcccgaacatcaatcaattgagcttcttcgaga 702

                                                                       
Query: 492 aaactaggatcttgcatttttgcgtgaagctcttctggttgaatatcttgcagcaagcat 551
           |||||||| ||||||| ||||||||||||||||||||| | ||| |||||||| | ||||
Sbjct: 701 aaactagggtcttgcaattttgcgtgaagctcttctgggtcaatgtcttgcagtacgcat 642

                                                                       
Query: 552 tgatccctctcagagagcacctgcactaaatgccatccaaattttgtcttacaccgcaca 611
           |||||||||||||  || || ||||||| |||||||||||||||||||||||| || |||
Sbjct: 641 tgatccctctcagcaagaacttgcactagatgccatccaaattttgtcttacatcgtaca 582

                                                                      
Query: 612 actttattcaaaggcgcactaaatgctgcttcttcaaactctggtaccatctgtcccct 670
           ||||| |||||||| |||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 581 actttgttcaaaggagcactaaatgctgcctcctcaaattctggtaccatttgtcccct 523
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>dbj|AK073511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041I16, full
            insert sequence
          Length = 1259

 Score =  369 bits (186), Expect = 8e-99
 Identities = 394/462 (85%), Gaps = 1/462 (0%)
 Strand = Plus / Minus

                                                                        
Query: 206  ctagtaagtcgggatggaagaatcgactttcaccgagtacgcgtggattccgcccgcaac 265
            ||||||||| ||||||||||||||| |||| || |  || ||||| || || ||||||||
Sbjct: 1007 ctagtaagttgggatggaagaatcggctttaacggcataagcgtgaatcccacccgcaac 948

                                                                        
Query: 266  attgtaaatcttttggaatccctgtgactgcagccacttggctacctgcatcgagcgcat 325
            ||||||||  |||  ||| |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 947  attgtaaacttttctgaacccctgtgattgcagccatttagctacctgcattgagcgcat 888

                                                                        
Query: 326  gccatggtggcacagaacataagtgtccttttggggattaaattcatctgtcatgaccgg 385
             ||||||||||||||||||||||||||||| || |||| ||||||||||||||| || ||
Sbjct: 887  accatggtggcacagaacataagtgtccttctgaggatcaaattcatctgtcataactgg 828

                                                                        
Query: 386  tccccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
            |||||| |||||||| || || |||||||||||||| || |||  ||| || ||| | ||
Sbjct: 827  tccccaagttccaaactgtcgaagaggtagaactttaaacccttcaagagaagctttatc 768

                                                                        
Query: 446  cacttcatcaggctcccgaacatcaatcaattgagcttcttcaataaaactaggatcttg 505
             ||||||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||
Sbjct: 767  tacttcatcaggctcccgaacatcaatcaactgagcttcttcaagaaagttaggatcttg 708

                                                                        
Query: 506  catttttgcgtgaagctcttctggttgaatatcttgcagcaagcattgatccctctcaga 565
            ||||||||| |||||||| |||||| |||| |||| ||  | |||||| || ||||||| 
Sbjct: 707  catttttgcatgaagctcctctggtggaatgtcttccactacgcattgttctctctcagc 648

                                                                        
Query: 566  gagcacctgcactaaatgccatccaaattttgtcttacaccgcacaactttattcaaagg 625
             ||||| ||||   |||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 647  aagcacttgca-acaatgccatccaaattttgtcttacaccgtacaaccttgttcaaagg 589

                                                      
Query: 626  cgcactaaatgctgcttcttcaaactctggtaccatctgtcc 667
             ||||  || |||||||| ||||| ||||| |||||||||||
Sbjct: 588  agcaccgaaagctgcttcctcaaattctggaaccatctgtcc 547
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>dbj|AK103992.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C08, full
           insert sequence
          Length = 599

 Score =  299 bits (151), Expect = 6e-78
 Identities = 289/335 (86%)
 Strand = Plus / Minus

                                                                       
Query: 206 ctagtaagtcgggatggaagaatcgactttcaccgagtacgcgtggattccgcccgcaac 265
           ||||||||| ||||||||||||||| |||| || |  || ||||| || || ||||||||
Sbjct: 347 ctagtaagttgggatggaagaatcggctttaacggcataagcgtgaatcccacccgcaac 288

                                                                       
Query: 266 attgtaaatcttttggaatccctgtgactgcagccacttggctacctgcatcgagcgcat 325
           ||||||||  |||  ||| |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 287 attgtaaacttttctgaacccctgtgattgcagccatttagctacctgcattgagcgcat 228

                                                                       
Query: 326 gccatggtggcacagaacataagtgtccttttggggattaaattcatctgtcatgaccgg 385
            ||||||||||||||||||||||||||||| || |||| ||||||||||||||| || ||
Sbjct: 227 accatggtggcacagaacataagtgtccttctgaggatcaaattcatctgtcataactgg 168

                                                                       
Query: 386 tccccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||||| |||||||| || || |||||||||||||| || |||  ||| || ||| | ||
Sbjct: 167 tccccaagttccaaactgtcgaagaggtagaactttaaacccttcaagagaagctttatc 108

                                                                       
Query: 446 cacttcatcaggctcccgaacatcaatcaattgagcttcttcaataaaactaggatcttg 505
            ||||||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||
Sbjct: 107 tacttcatcaggctcccgaacatcaatcaactgagcttcttcaagaaagttaggatcttg 48

                                              
Query: 506 catttttgcgtgaagctcttctggttgaatatctt 540
           ||||||||| |||||||| |||||| |||| ||||
Sbjct: 47  catttttgcatgaagctcctctggtggaatgtctt 13
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                            
Query: 446      cacttcatcaggctcccgaacatcaatcaattgagcttcttcaataaaactaggatcttg 505
                |||||||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||
Sbjct: 29157863 cacttcatcaggctcccgaacatcaatcaactgagcttcttcaagaaagttaggatcttg 29157804

                                                   
Query: 506      catttttgcgtgaagctcttctggttgaatatctt 540
                ||||||||| |||||||| |||||| |||| ||||
Sbjct: 29157803 catttttgcatgaagctcctctggtggaatgtctt 29157769



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                            
Query: 338      cagaacataagtgtccttttggggattaaattcatctgtcatgaccggtccccaggttcc 397
                |||||||||||||||||| || |||| ||||||||||||||| || |||||||| |||||
Sbjct: 29158362 cagaacataagtgtccttctgaggatcaaattcatctgtcataactggtccccaagttcc 29158303

                                        
Query: 398      aaattggcggagaggtagaacttt 421
                ||| || || ||||||||||||||
Sbjct: 29158302 aaactgtcgaagaggtagaacttt 29158279



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                            
Query: 557      cctctcagagagcacctgcactaaatgccatccaaattttgtcttacaccgcacaacttt 616
                ||||||||  ||||| ||||  ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 29157678 cctctcagcaagcacttgcaacaaatgccatccaaattttgtcttacaccgtacaacctt 29157619

                                                       
Query: 617      attcaaaggcgcactaaatgctgcttcttcaaactctgg 655
                 |||||||| ||||  || |||||||| ||||| |||||
Sbjct: 29157618 gttcaaaggagcaccgaaagctgcttcctcaaattctgg 29157580



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 286      cctgtgactgcagccacttggctacctgcatcgagcgcatgccatggtggcac 338
                ||||||| |||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct: 29158640 cctgtgattgcagccatttagctacctgcattgagcgcataccatggtggcac 29158588



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                            
Query: 206      ctagtaagtcgggatggaagaatcgactttcaccgagtacgcgtggattccgcccgcaac 265
                ||||||||| ||||||||||||||| |||| || |  || ||||| || || ||||||||
Sbjct: 29158838 ctagtaagttgggatggaagaatcggctttaacggcataagcgtgaatcccacccgcaac 29158779

                        
Query: 266      attgtaaa 273
                ||||||||
Sbjct: 29158778 attgtaaa 29158771
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>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                         
Query: 446   cacttcatcaggctcccgaacatcaatcaattgagcttcttcaataaaactaggatcttg 505
             |||||||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||
Sbjct: 92981 cacttcatcaggctcccgaacatcaatcaactgagcttcttcaagaaagttaggatcttg 92922

                                                
Query: 506   catttttgcgtgaagctcttctggttgaatatctt 540
             ||||||||| |||||||| |||||| |||| ||||
Sbjct: 92921 catttttgcatgaagctcctctggtggaatgtctt 92887



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                         
Query: 338   cagaacataagtgtccttttggggattaaattcatctgtcatgaccggtccccaggttcc 397
             |||||||||||||||||| || |||| ||||||||||||||| || |||||||| |||||
Sbjct: 93480 cagaacataagtgtccttctgaggatcaaattcatctgtcataactggtccccaagttcc 93421

                                     
Query: 398   aaattggcggagaggtagaacttt 421
             ||| || || ||||||||||||||
Sbjct: 93420 aaactgtcgaagaggtagaacttt 93397



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                         
Query: 557   cctctcagagagcacctgcactaaatgccatccaaattttgtcttacaccgcacaacttt 616
             ||||||||  ||||| ||||  ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 92796 cctctcagcaagcacttgcaacaaatgccatccaaattttgtcttacaccgtacaacctt 92737

                                                    
Query: 617   attcaaaggcgcactaaatgctgcttcttcaaactctgg 655
              |||||||| ||||  || |||||||| ||||| |||||
Sbjct: 92736 gttcaaaggagcaccgaaagctgcttcctcaaattctgg 92698



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 286   cctgtgactgcagccacttggctacctgcatcgagcgcatgccatggtggcac 338
             ||||||| |||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct: 93758 cctgtgattgcagccatttagctacctgcattgagcgcataccatggtggcac 93706



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                         
Query: 206   ctagtaagtcgggatggaagaatcgactttcaccgagtacgcgtggattccgcccgcaac 265
             ||||||||| ||||||||||||||| |||| || |  || ||||| || || ||||||||
Sbjct: 93956 ctagtaagttgggatggaagaatcggctttaacggcataagcgtgaatcccacccgcaac 93897

                     
Query: 266   attgtaaa 273
             ||||||||
Sbjct: 93896 attgtaaa 93889
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>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1200_C08
          Length = 106214

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                          
Query: 446    cacttcatcaggctcccgaacatcaatcaattgagcttcttcaataaaactaggatcttg 505
              |||||||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||
Sbjct: 105820 cacttcatcaggctcccgaacatcaatcaactgagcttcttcaagaaagttaggatcttg 105761

                                                 
Query: 506    catttttgcgtgaagctcttctggttgaatatctt 540
              ||||||||| |||||||| |||||| |||| ||||
Sbjct: 105760 catttttgcatgaagctcctctggtggaatgtctt 105726



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                          
Query: 557    cctctcagagagcacctgcactaaatgccatccaaattttgtcttacaccgcacaacttt 616
              ||||||||  ||||| ||||  ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 105635 cctctcagcaagcacttgcaacaaatgccatccaaattttgtcttacaccgtacaacctt 105576

                                                     
Query: 617    attcaaaggcgcactaaatgctgcttcttcaaactctgg 655
               |||||||| ||||  || |||||||| ||||| |||||
Sbjct: 105575 gttcaaaggagcaccgaaagctgcttcctcaaattctgg 105537
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>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence
          Length = 131025

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 582   tgccatccaaattttgtcttacaccgcacaactttattcaaaggcgcactaaa 634
             |||||||||||||||||||| |||   |||||||| || ||||| ||||||||
Sbjct: 93038 tgccatccaaattttgtcttgcacattacaactttgtttaaaggtgcactaaa 93090



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 446   cacttcatcaggctcccgaacatcaatcaa 475
             |||||| |||||||| ||||||||||||||
Sbjct: 86218 cacttcttcaggctctcgaacatcaatcaa 86247
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>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence
          Length = 134901

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 582   tgccatccaaattttgtcttacaccgcacaactttattcaaaggcgcactaaa 634
             |||||||||||||||||||| |||   |||||||| || ||||| ||||||||
Sbjct: 64859 tgccatccaaattttgtcttgcacattacaactttgtttaaaggtgcactaaa 64807



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 446   cacttcatcaggctcccgaacatcaatcaa 475
             |||||| |||||||| ||||||||||||||
Sbjct: 71679 cacttcttcaggctctcgaacatcaatcaa 71650
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>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 23    atactagttctccaaaataactc 45
             |||||||||||||||||||||||
Sbjct: 56305 atactagttctccaaaataactc 56283
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>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence
          Length = 218647

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 23     atactagttctccaaaataactc 45
              |||||||||||||||||||||||
Sbjct: 209387 atactagttctccaaaataactc 209365
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>ref|NM_121942.2| Arabidopsis thaliana isomerase AT5G19370 mRNA, complete cds
          Length = 1038

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 388 cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 755 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 698
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>emb|AL355608.11| Human DNA sequence from clone RP11-567J2 on chromosome 9 Contains part
             of the ASTN2 gene for astrotactin 2 (KIAA0634) and a novel
             gene similar to ribosomal protein L10 (RPL10), complete
             sequence
          Length = 132590

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 428   tggaagggatgctctctccacttcatcagg 457
             |||||||| ||||||||| |||||||||||
Sbjct: 32674 tggaagggctgctctctctacttcatcagg 32645
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>emb|Z86095.1|ATZ86095 A.thaliana mRNA for peptidyl-prolyl cis-trans isomerase
          Length = 1018

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 388 cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 735 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 678
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>gb|AY059127.1| Arabidopsis thaliana putative peptidyl-prolyl cis-trans isomerase
           (At5g19370) mRNA, complete cds
          Length = 931

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 388 cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 718 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 661
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>gb|AF370165.1| Arabidopsis thaliana putative peptidyl-prolyl cis-trans isomerase
           (At5g19370) mRNA, complete cds
          Length = 1040

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 388 cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 738 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 681
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>emb|BX829992.1|CNS09YUV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB52ZA01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 978

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 388 cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 722 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 665
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>gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, complete sequence
          Length = 153731

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 548   gcattgatccctctcagagagc 569
             ||||||||||||||||||||||
Sbjct: 50220 gcattgatccctctcagagagc 50241
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>gb|AY086512.1| Arabidopsis thaliana clone 25533 mRNA, complete sequence
          Length = 1012

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 388 cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
           |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 731 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 674
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>gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24
          Length = 103024

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 388   cccaggttccaaattggcggagaggtagaactttgaagcctggaagggatgctctctc 445
             |||| ||||||||||||||||| || |  |||||||| ||||| | ||||||| ||||
Sbjct: 51916 cccatgttccaaattggcggagtgggaacactttgaatcctggcaaggatgctatctc 51973
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 293     ctgcagccacttggctacctgc 314
               ||||||||||||||||||||||
Sbjct: 2947740 ctgcagccacttggctacctgc 2947761
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>ref|XM_649731.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (43.t00013)
           partial mRNA
          Length = 1305

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 474 aattgagcttcttcaataaaactag 498
           ||||||| |||||||||||||||||
Sbjct: 848 aattgaggttcttcaataaaactag 824
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>ref|XM_850101.1| PREDICTED: Canis familiaris heparan sulfate proteoglycan 2 (HSPG2),
            mRNA
          Length = 5223

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   tctctgaatcctgacattggc 98
            |||||||||||||||||||||
Sbjct: 3766 tctctgaatcctgacattggc 3746
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>emb|AL121868.11|HSA541I12 Human DNA sequence from clone RP11-541I12 on chromosome Xq22.1-22.3,
             complete sequence
          Length = 118269

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 577   ctaaatgccatccaaattttgtctt 601
             |||||||||||||||||||| ||||
Sbjct: 72744 ctaaatgccatccaaattttatctt 72720
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>gb|AC090806.12| Homo sapiens chromosome 8, clone RP11-94A24, complete sequence
          Length = 131196

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    actagttctccaaaataactc 45
             |||||||||||||||||||||
Sbjct: 96151 actagttctccaaaataactc 96171
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>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence
          Length = 190341

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     atccatactagttctccaaaa 39
              |||||||||||||||||||||
Sbjct: 133096 atccatactagttctccaaaa 133076
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 633     aatgctgcttcttcaaactctggtaccat 661
               ||||||||||||||||| ||||| |||||
Sbjct: 1200912 aatgctgcttcttcaaattctggaaccat 1200940
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>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9
          Length = 151959

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     actagttctccaaaataactc 45
              |||||||||||||||||||||
Sbjct: 146936 actagttctccaaaataactc 146916
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>dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
             sequence
          Length = 174667

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    actagttctccaaaataactc 45
             |||||||||||||||||||||
Sbjct: 77094 actagttctccaaaataactc 77074
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>gb|AC162792.5| Mus musculus chromosome 7, clone RP24-187H10, complete sequence
          Length = 170668

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    ctgtgactgcagccacttgg 306
              ||||||||||||||||||||
Sbjct: 153347 ctgtgactgcagccacttgg 153328
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>gb|AC109227.12| Mus musculus chromosome 7, clone RP23-396C19, complete sequence
          Length = 205016

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ctgtgactgcagccacttgg 306
             ||||||||||||||||||||
Sbjct: 87997 ctgtgactgcagccacttgg 88016
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>emb|AL845315.3| Human DNA sequence from clone RP11-642C7 on chromosome X, complete
             sequence
          Length = 51794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    actagttctccaaaataact 44
             ||||||||||||||||||||
Sbjct: 31464 actagttctccaaaataact 31445
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>gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence
          Length = 220468

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 537    tcttgcagcaagcattgatc 556
              ||||||||||||||||||||
Sbjct: 197222 tcttgcagcaagcattgatc 197241
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>emb|CR378666.1| Photobacterium profundum SS9; segment 4/12
          Length = 348313

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gcagagaagcctctggagtt 183
              ||||||||||||||||||||
Sbjct: 208339 gcagagaagcctctggagtt 208320
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>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence
          Length = 196331

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    tcttgcagcaagcattgatc 556
              ||||||||||||||||||||
Sbjct: 184628 tcttgcagcaagcattgatc 184609
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>gb|AC119868.2| Homo sapiens chromosome 18, clone RP11-465I4, complete sequence
          Length = 174780

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aatcctgacattggcacaaa 103
             ||||||||||||||||||||
Sbjct: 15578 aatcctgacattggcacaaa 15559
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>gb|AC103871.2| Homo sapiens chromosome 15, clone RP11-730G13, complete sequence
          Length = 169687

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   aagcagagaagcctctggag 181
             ||||||||||||||||||||
Sbjct: 73152 aagcagagaagcctctggag 73133
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>gb|AC068254.6| Homo sapiens chromosome 18, clone RP11-543H23, complete sequence
          Length = 219260

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     aatcctgacattggcacaaa 103
              ||||||||||||||||||||
Sbjct: 159393 aatcctgacattggcacaaa 159374
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>gb|AC011912.7|AC011912 Homo sapiens chromosome 15 clone RP11-547D13 map 15q21.3, complete
             sequence
          Length = 175264

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   atccaaattttgtcttacac 605
             ||||||||||||||||||||
Sbjct: 13139 atccaaattttgtcttacac 13158
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>gb|AC025272.6|AC025272 Homo sapiens chromosome 15 clone RP11-548M13 map 15q21.3, complete
              sequence
          Length = 170749

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 586    atccaaattttgtcttacac 605
              ||||||||||||||||||||
Sbjct: 129953 atccaaattttgtcttacac 129972
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>gb|AC137152.2| Mus musculus BAC clone RP24-269A16 from chromosome 7, complete sequence
          Length = 179719

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ctgtgactgcagccacttgg 306
             ||||||||||||||||||||
Sbjct: 24057 ctgtgactgcagccacttgg 24038
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 631    taaatgctgcttcttcaaactctggtaccatc 662
              ||||||| ||||||||||| ||||| ||||||
Sbjct: 346316 taaatgcagcttcttcaaattctggaaccatc 346285
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>gb|AC135002.2| Homo sapiens 3 BAC RP11-151I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 88990

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   caaattctacaaaataggca 131
             ||||||||||||||||||||
Sbjct: 16599 caaattctacaaaataggca 16580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,958,930
Number of Sequences: 3902068
Number of extensions: 5958930
Number of successful extensions: 120396
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 120196
Number of HSP's gapped (non-prelim): 205
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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