Clone Information

BLAST Search Result

Clone Name	rbags39i18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_475766.1\| Oryza sativa (japonica cultivar-group), predic...	159	1e-35
2	dbj\|AK063545.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	159	1e-35
3	gb\|AC097112.2\| Oryza sativa (japonica cultivar-group) chromosome...	117	5e-23
4	gb\|AC097111.2\| Oryza sativa (japonica cultivar-group) chromosome...	117	5e-23
5	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	117	5e-23
6	emb\|AJ234662.1\|HVU234662 Hordeum vulgare genomic DNA fragment; c...	48	0.037
7	gb\|AF325196.1\|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L...	46	0.15
8	ref\|NM_111853.2\| Arabidopsis thaliana ATP binding / microtubule ...	44	0.58
9	gb\|AC009400.4\|ATAC009400 Arabidopsis thaliana chromosome III BAC...	44	0.58
10	ref\|NM_001003061.1\| Canis familiaris flavin containing monooxyge...	42	2.3
11	gb\|AC006451.5\| Homo sapiens PAC clone RP4-562A11 from 7, complet...	42	2.3
12	emb\|BX323872.6\| Zebrafish DNA sequence from clone RP71-25E6, com...	42	2.3
13	gb\|AF384053.1\|AF384053 Canis familiaris flavin-containing monoox...	42	2.3
14	ref\|NM_214064.1\| Sus scrofa hepatic flavin-containing monooxygen...	42	2.3
15	gb\|AC002460.1\|AC002460 Human BAC clone CTB-191D16, complete sequ...	42	2.3
16	gb\|AF132517.1\|AF132517 Lutzomyia longipalpis SL1 protein (SL1) m...	42	2.3
17	emb\|BX511269.12\| Zebrafish DNA sequence from clone CH211-207N9 i...	42	2.3
18	emb\|BX088599.6\| Zebrafish DNA sequence from clone CH211-105N9 in...	42	2.3
19	emb\|AL954649.4\| Zebrafish DNA sequence from clone CH211-285P11, ...	42	2.3
20	emb\|AL935309.8\| Mouse DNA sequence from clone RP24-113M11 on chr...	42	2.3
21	emb\|AL845478.6\| Mouse DNA sequence from clone RP23-186J18 on chr...	42	2.3
22	gb\|M32031.1\|PIGFMOAA Pig hepatic flavin-containing monooxygenase...	42	2.3
23	gb\|AC154387.2\| Mus musculus BAC clone RP23-10K1 from chromosome ...	40	9.1
24	gb\|AC123882.6\| Mus musculus chromosome 1, clone RP23-447L15, com...	40	9.1
25	gb\|CP000067.1\| Trypanosoma brucei chromosome 4, complete sequence	40	9.1
26	gb\|AC079933.3\| Trypanosoma brucei chromosome 4 clone RPCI93-1H19...	40	9.1
27	gb\|AC093100.2\| Drosophila melanogaster clone BACR05J04, complete...	40	9.1
28	gb\|AC167135.3\| Mus musculus chromosome 1, clone RP24-335L18, com...	40	9.1
29	gb\|AC164102.2\| Mus musculus BAC clone RP23-7E23 from chromosome ...	40	9.1
30	gb\|AC160101.7\| Mus musculus chromosome 1, clone RP24-126E20, com...	40	9.1
31	ref\|XM_820170.1\| Trypanosoma brucei TREU927 clone RPCI93-1H19 hy...	40	9.1
32	emb\|BX957298.9\| Zebrafish DNA sequence from clone CH211-268H1 in...	40	9.1
33	gb\|AC011283.3\| Homo sapiens BAC clone CTD-2016A9 from 7, complet...	40	9.1
34	gb\|AC145768.1\| Pan troglodytes BAC clone RP43-5G4 from 7, comple...	40	9.1
35	emb\|AL031906.1\|HS90O12 Human DNA sequence from clone RP1-90O12 o...	40	9.1
36	emb\|CR925828.3\| Zebrafish DNA sequence from clone DKEY-156K7 in ...	40	9.1
37	ref\|XM_969637.1\| PREDICTED: Tribolium castaneum similar to CG120...	40	9.1
38	emb\|X94607.1\|SCLACHXII S.cerevisiae (EU) DNA from left arm of ch...	40	9.1
39	emb\|AL808129.8\| Zebrafish DNA sequence from clone CH211-255F14 i...	40	9.1
40	emb\|AL603785.4\| Zebrafish DNA sequence from clone BUSM1-46M7 Con...	40	9.1
41	emb\|BX950187.14\| Zebrafish DNA sequence from clone CH211-15O14 i...	40	9.1
42	emb\|AL645784.20\| Mouse DNA sequence from clone RP23-11C7 on chro...	40	9.1
43	gb\|AC091722.3\| Sus scrofa clone RP44-304F21, complete sequence	40	9.1
44	emb\|BX465856.14\| Zebrafish DNA sequence from clone DKEY-88D24 in...	40	9.1
45	ref\|NM_212568.1\| Danio rerio protein phosphatase 1, regulatory s...	40	9.1
46	emb\|BX927261.8\| Zebrafish DNA sequence from clone DKEY-17O15 in ...	40	9.1
47	gb\|DQ413236.1\| Acyrthosiphon pisum isolate WHAP0465 putative 20S...	40	9.1
48	gb\|AC119151.1\| Homo sapiens chromosome 5 clone CTD-2582L22, comp...	40	9.1
49	gb\|AC096631.2\| Homo sapiens chromosome 1 clone RP11-16L9, comple...	40	9.1
50	gb\|AC106794.3\| Homo sapiens chromosome 5 clone RP11-419C19, comp...	40	9.1
51	emb\|BX324184.10\| Zebrafish DNA sequence from clone CH211-184N21 ...	40	9.1
52	gb\|AC009351.7\| Drosophila melanogaster, chromosome 2L, region 26...	40	9.1
53	gb\|AC158534.2\| Mus musculus BAC clone RP23-32O6 from chromosome ...	40	9.1
54	gb\|AC131791.4\| Mus musculus BAC clone RP24-462N24 from chromosom...	40	9.1
55	gb\|AC092644.3\| Homo sapiens BAC clone RP11-394A2 from 2, complet...	40	9.1
56	gb\|AC103591.3\| Homo sapiens chromosome 1 clone RP11-386I14, comp...	40	9.1
57	gb\|AC140052.4\| Mus musculus BAC clone RP23-346E11 from chromosom...	40	9.1
58	gb\|BC048892.1\| Danio rerio protein phosphatase 1, regulatory sub...	40	9.1
59	gb\|AC153016.2\| Mus musculus BAC clone RP23-182K18 from 13, compl...	40	9.1
60	emb\|BX470117.7\| Zebrafish DNA sequence from clone CH211-204N10 i...	40	9.1
61	emb\|AL772209.5\| Zebrafish DNA sequence from clone DKEY-49F1 in l...	40	9.1
62	emb\|Z73219.1\|SCYLR047C S.cerevisiae chromosome XII reading frame...	40	9.1
63	gb\|AE003613.4\| Drosophila melanogaster chromosome 2L, section 22...	40	9.1
64	emb\|AM231651.1\| Beta vulgaris subsp. vulgaris transposon VulMITE...	40	9.1
65	emb\|AM231650.1\| Beta vulgaris subsp. vulgaris transposon VulMITE...	40	9.1
66	gb\|DQ331077.1\| Synthetic construct Saccharomyces cerevisiae clon...	40	9.1
67	gb\|AC161462.5\| Gallus gallus BAC clone CH261-174G12 from chromos...	40	9.1
68	gb\|AC005285.1\|AC005285 Drosophila melanogaster DNA sequence (P1s...	40	9.1
69	emb\|CR388224.11\| Zebrafish DNA sequence from clone CH211-23L10 i...	40	9.1
70	emb\|AL645600.11\| Mouse DNA sequence from clone RP23-396N4 on chr...	40	9.1

>ref|XM_475766.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1560

 Score =  159 bits (80), Expect = 1e-35
 Identities = 270/334 (80%)
 Strand = Plus / Minus

                                                                        
Query: 330  cttccaccttttgacggtaagcacatgaaccctttcgaaacatagccggttcattgttgt 389
            ||||||||||||| ||||||| |||||||||||| ||||||| ||| |||||||||||||
Sbjct: 1426 cttccaccttttgccggtaagtacatgaacccttccgaaacacagctggttcattgttgt 1367

                                                                        
Query: 390  agttcatttgaaatcgctggaaaagtaactcattcttgtcctttggtaatgtgtccttca 449
            | ||||  |||||| |||||||||| ||||| ||||||||||||| ||||||  |||| |
Sbjct: 1366 aattcaaatgaaattgctggaaaagcaactcgttcttgtcctttgataatgttcccttta 1307

                                                                        
Query: 450  gtatctccttagctttgttttcgtcttctccagatttcactaacatccaaaagcatgtcg 509
             ||||||   ||||| ||||||   ||  ||||||||||||| |||||||||||||||  
Sbjct: 1306 atatctcacgagcttcgttttcacttttgccagatttcactagcatccaaaagcatgtgc 1247

                                                                        
Query: 510  cgtattgatttctgttgtgacattctgattgcctctgggacaaataatcacaaacgatcc 569
             |||||| ||  || |||| ||||||| ||| |||   ||||||||||||||||  ||| 
Sbjct: 1246 tgtattggttggtggtgtggcattctgcttgtctcgatgacaaataatcacaaagtatct 1187

                                                                        
Query: 570  ttggttctaggttacagaaaacttntacttggaagtgtggtggctgcactagttntttac 629
            || ||| | ||| ||| | || || | | |  ||||| ||||||| |||||  |  ||  
Sbjct: 1186 tttgttttgggtaacatagaagttctgcctcaaagtgcggtggctccactaagtccttgt 1127

                                              
Query: 630  tggggaaatattctttccacttcatcatgtaaaa 663
            |||||||| | |||||||||||||||||||||||
Sbjct: 1126 tggggaaaaaatctttccacttcatcatgtaaaa 1093



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 411 aaagtaactcattcttgtcctttg 434
           ||||||||||||||||||||||||
Sbjct: 574 aaagtaactcattcttgtcctttg 551

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>dbj|AK063545.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D02, full
            insert sequence
          Length = 1853

 Score =  159 bits (80), Expect = 1e-35
 Identities = 270/334 (80%)
 Strand = Plus / Minus

                                                                        
Query: 330  cttccaccttttgacggtaagcacatgaaccctttcgaaacatagccggttcattgttgt 389
            ||||||||||||| ||||||| |||||||||||| ||||||| ||| |||||||||||||
Sbjct: 1601 cttccaccttttgccggtaagtacatgaacccttccgaaacacagctggttcattgttgt 1542

                                                                        
Query: 390  agttcatttgaaatcgctggaaaagtaactcattcttgtcctttggtaatgtgtccttca 449
            | ||||  |||||| |||||||||| ||||| ||||||||||||| ||||||  |||| |
Sbjct: 1541 aattcaaatgaaattgctggaaaagcaactcgttcttgtcctttgataatgttcccttta 1482

                                                                        
Query: 450  gtatctccttagctttgttttcgtcttctccagatttcactaacatccaaaagcatgtcg 509
             ||||||   ||||| ||||||   ||  ||||||||||||| |||||||||||||||  
Sbjct: 1481 atatctcacgagcttcgttttcacttttgccagatttcactagcatccaaaagcatgtgc 1422

                                                                        
Query: 510  cgtattgatttctgttgtgacattctgattgcctctgggacaaataatcacaaacgatcc 569
             |||||| ||  || |||| ||||||| ||| |||   ||||||||||||||||  ||| 
Sbjct: 1421 tgtattggttggtggtgtggcattctgcttgtctcgatgacaaataatcacaaagtatct 1362

                                                                        
Query: 570  ttggttctaggttacagaaaacttntacttggaagtgtggtggctgcactagttntttac 629
            || ||| | ||| ||| | || || | | |  ||||| ||||||| |||||  |  ||  
Sbjct: 1361 tttgttttgggtaacatagaagttctgcctcaaagtgcggtggctccactaagtccttgt 1302

                                              
Query: 630  tggggaaatattctttccacttcatcatgtaaaa 663
            |||||||| | |||||||||||||||||||||||
Sbjct: 1301 tggggaaaaaatctttccacttcatcatgtaaaa 1268



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 411 aaagtaactcattcttgtcctttg 434
           ||||||||||||||||||||||||
Sbjct: 749 aaagtaactcattcttgtcctttg 726

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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                         
Query: 335   accttttgacggtaagcacatgaaccctttcgaaacatagccggttcattgttgtagttc 394
             |||||||| ||||||| |||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct: 33915 accttttgccggtaagtacatgaacccttccgaaacacagctggttcattgttgtaattc 33856

                                                            
Query: 395   atttgaaatcgctggaaaagtaactcattcttgtcctttggtaatgt 441
             |  |||||| |||||||||| ||||| ||||||||||||| ||||||
Sbjct: 33855 aaatgaaattgctggaaaagcaactcgttcttgtcctttgataatgt 33809



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 630   tggggaaatattctttccacttcatcatgtaaaa 663
             |||||||| | |||||||||||||||||||||||
Sbjct: 33400 tggggaaaaaatctttccacttcatcatgtaaaa 33367



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 479   ccagatttcactaacatccaaaagcatgt 507
             ||||||||||||| |||||||||||||||
Sbjct: 33673 ccagatttcactagcatccaaaagcatgt 33645



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 411   aaagtaactcattcttgtcctttg 434
             ||||||||||||||||||||||||
Sbjct: 31677 aaagtaactcattcttgtcctttg 31654

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>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08,
             complete sequence
          Length = 95638

 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                         
Query: 335   accttttgacggtaagcacatgaaccctttcgaaacatagccggttcattgttgtagttc 394
             |||||||| ||||||| |||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct: 86576 accttttgccggtaagtacatgaacccttccgaaacacagctggttcattgttgtaattc 86517

                                                            
Query: 395   atttgaaatcgctggaaaagtaactcattcttgtcctttggtaatgt 441
             |  |||||| |||||||||| ||||| ||||||||||||| ||||||
Sbjct: 86516 aaatgaaattgctggaaaagcaactcgttcttgtcctttgataatgt 86470



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 630   tggggaaatattctttccacttcatcatgtaaaa 663
             |||||||| | |||||||||||||||||||||||
Sbjct: 86061 tggggaaaaaatctttccacttcatcatgtaaaa 86028



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 479   ccagatttcactaacatccaaaagcatgt 507
             ||||||||||||| |||||||||||||||
Sbjct: 86334 ccagatttcactagcatccaaaagcatgt 86306



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 411   aaagtaactcattcttgtcctttg 434
             ||||||||||||||||||||||||
Sbjct: 84338 aaagtaactcattcttgtcctttg 84315

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                            
Query: 335      accttttgacggtaagcacatgaaccctttcgaaacatagccggttcattgttgtagttc 394
                |||||||| ||||||| |||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct: 26389224 accttttgccggtaagtacatgaacccttccgaaacacagctggttcattgttgtaattc 26389165

                                                               
Query: 395      atttgaaatcgctggaaaagtaactcattcttgtcctttggtaatgt 441
                |  |||||| |||||||||| ||||| ||||||||||||| ||||||
Sbjct: 26389164 aaatgaaattgctggaaaagcaactcgttcttgtcctttgataatgt 26389118



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 630      tggggaaatattctttccacttcatcatgtaaaa 663
                |||||||| | |||||||||||||||||||||||
Sbjct: 26388709 tggggaaaaaatctttccacttcatcatgtaaaa 26388676



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 479      ccagatttcactaacatccaaaagcatgt 507
                ||||||||||||| |||||||||||||||
Sbjct: 26388982 ccagatttcactagcatccaaaagcatgt 26388954



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 411      aaagtaactcattcttgtcctttg 434
                ||||||||||||||||||||||||
Sbjct: 26386986 aaagtaactcattcttgtcctttg 26386963

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>emb|AJ234662.1|HVU234662 Hordeum vulgare genomic DNA fragment; clone MWG0947.uni
          Length = 352

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 88/110 (80%)
 Strand = Plus / Plus

                                                                       
Query: 548 gacaaataatcacaaacgatccttggttctaggttacagaaaacttntacttggaagtgt 607
           |||||||||||| |||| ||| || | | | ||| ||||| ||||| | | | |||||||
Sbjct: 121 gacaaataatcaaaaaccatcgttagctttgggtaacagagaacttctgcatcgaagtgt 180

                                                             
Query: 608 ggtggctgcactagttntttactggggaaatattctttccacttcatcat 657
           ||||||||||||| || |||     |||| ||||||| ||||||||||||
Sbjct: 181 ggtggctgcactaattctttgtctaggaattattcttgccacttcatcat 230

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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1),
           and LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 25  atttcaaaacatgttcagaaattcaaaaaatgttc 59
           |||||||||||||||| | | ||||||||||||||
Sbjct: 399 atttcaaaacatgttctggatttcaaaaaatgttc 433

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>ref|NM_111853.2| Arabidopsis thaliana ATP binding / microtubule motor AT3G10180 mRNA,
            complete cds
          Length = 4047

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 458  ttagctttgttttcgtcttctc 479
            ||||||||||||||||||||||
Sbjct: 2500 ttagctttgttttcgtcttctc 2479

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>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence,
             complete sequence
          Length = 87937

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 458   ttagctttgttttcgtcttctc 479
             ||||||||||||||||||||||
Sbjct: 81553 ttagctttgttttcgtcttctc 81532

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>ref|NM_001003061.1| Canis familiaris flavin containing monooxygenase 1 (FMO1), mRNA
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 24  gatttcaaaacatgttcagaaattc 48
           ||||||| |||||||||||||||||
Sbjct: 722 gatttcagaacatgttcagaaattc 746

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>gb|AC006451.5| Homo sapiens PAC clone RP4-562A11 from 7, complete sequence
          Length = 145966

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 636   aatattctttccacttcatca 656
             |||||||||||||||||||||
Sbjct: 87778 aatattctttccacttcatca 87798

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>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 514   ttgatttctgttgtgacattc 534
             |||||||||||||||||||||
Sbjct: 75943 ttgatttctgttgtgacattc 75963

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>gb|AF384053.1|AF384053 Canis familiaris flavin-containing monooxygenase 1 mRNA, complete
           cds
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 24  gatttcaaaacatgttcagaaattc 48
           ||||||| |||||||||||||||||
Sbjct: 722 gatttcagaacatgttcagaaattc 746

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>ref|NM_214064.1| Sus scrofa hepatic flavin-containing monooxygenase (FMO) (FMO1),
           mRNA
          Length = 2080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 24  gatttcaaaacatgttcagaaattc 48
           ||||||| |||||||||||||||||
Sbjct: 769 gatttcagaacatgttcagaaattc 793

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>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence
          Length = 174952

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 78     ttaccaaaactccctttgtct 98
              |||||||||||||||||||||
Sbjct: 131805 ttaccaaaactccctttgtct 131825

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>gb|AF132517.1|AF132517 Lutzomyia longipalpis SL1 protein (SL1) mRNA, complete cds
          Length = 713

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 30  aaaacatgttcagaaattcaaaaaa 54
           |||||||||||| ||||||||||||
Sbjct: 196 aaaacatgttcaaaaattcaaaaaa 220

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>emb|BX511269.12| Zebrafish DNA sequence from clone CH211-207N9 in linkage group 20,
           complete sequence
          Length = 161408

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 514 ttgatttctgttgtgacattctgat 538
           |||||||||| ||||||||||||||
Sbjct: 692 ttgatttctgctgtgacattctgat 668

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>emb|BX088599.6| Zebrafish DNA sequence from clone CH211-105N9 in linkage group 20,
              complete sequence
          Length = 161647

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 514    ttgatttctgttgtgacattctgat 538
              |||||||||| ||||||||||||||
Sbjct: 160339 ttgatttctgctgtgacattctgat 160315

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>emb|AL954649.4| Zebrafish DNA sequence from clone CH211-285P11, complete sequence
          Length = 170441

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 514   ttgatttctgttgtgacattc 534
             |||||||||||||||||||||
Sbjct: 69835 ttgatttctgttgtgacattc 69855

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>emb|AL935309.8| Mouse DNA sequence from clone RP24-113M11 on chromosome 2, complete
             sequence
          Length = 45336

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   cctatagaatacataaggatc 233
             |||||||||||||||||||||
Sbjct: 26468 cctatagaatacataaggatc 26448

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>emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chromosome 2, complete
              sequence
          Length = 222451

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 35     atgttcagaaattcaaaaaat 55
              |||||||||||||||||||||
Sbjct: 131367 atgttcagaaattcaaaaaat 131347

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>gb|M32031.1|PIGFMOAA Pig hepatic flavin-containing monooxygenase (FMO) mRNA, complete
           cds
          Length = 2080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 24  gatttcaaaacatgttcagaaattc 48
           ||||||| |||||||||||||||||
Sbjct: 769 gatttcagaacatgttcagaaattc 793

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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    caaagaatgcaaccatatgc 174
              ||||||||||||||||||||
Sbjct: 159886 caaagaatgcaaccatatgc 159905

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>gb|AC123882.6| Mus musculus chromosome 1, clone RP23-447L15, complete sequence
          Length = 177559

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    aggatcatcatcttctgttg 247
              ||||||||||||||||||||
Sbjct: 145207 aggatcatcatcttctgttg 145188

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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ccgccacatcccaccgctca 319
              ||||||||||||||||||||
Sbjct: 627286 ccgccacatcccaccgctca 627305

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>gb|AC079933.3| Trypanosoma brucei chromosome 4 clone RPCI93-1H19, complete sequence
          Length = 171392

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ccgccacatcccaccgctca 319
             ||||||||||||||||||||
Sbjct: 79783 ccgccacatcccaccgctca 79802

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>gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete sequence
          Length = 214621

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 44     aattcaaaaaatgttctgcttgtt 67
              |||| |||||||||||||||||||
Sbjct: 197354 aatttaaaaaatgttctgcttgtt 197331

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>gb|AC167135.3| Mus musculus chromosome 1, clone RP24-335L18, complete sequence
          Length = 157775

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  aggatcatcatcttctgttg 247
            ||||||||||||||||||||
Sbjct: 4536 aggatcatcatcttctgttg 4517

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>gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome 13, complete sequence
          Length = 234552

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 464    ttgttttcgtcttctccagatttc 487
              |||||||||| |||||||||||||
Sbjct: 133403 ttgttttcgttttctccagatttc 133380

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>gb|AC160101.7| Mus musculus chromosome 1, clone RP24-126E20, complete sequence
          Length = 159705

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    aggatcatcatcttctgttg 247
              ||||||||||||||||||||
Sbjct: 147668 aggatcatcatcttctgttg 147687

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>ref|XM_820170.1| Trypanosoma brucei TREU927 clone RPCI93-1H19 hypothetical protein
            (Tb927.4.2410) partial mRNA
          Length = 3447

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  ccgccacatcccaccgctca 319
            ||||||||||||||||||||
Sbjct: 2682 ccgccacatcccaccgctca 2701

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>emb|BX957298.9| Zebrafish DNA sequence from clone CH211-268H1 in linkage group 21,
             complete sequence
          Length = 140969

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    atgttcagaaattcaaaaaa 54
             ||||||||||||||||||||
Sbjct: 82730 atgttcagaaattcaaaaaa 82711

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>gb|AC011283.3| Homo sapiens BAC clone CTD-2016A9 from 7, complete sequence
          Length = 68326

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   tttcaaaacatgttcagaaa 45
            ||||||||||||||||||||
Sbjct: 4446 tttcaaaacatgttcagaaa 4427

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>gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, complete sequence
          Length = 154325

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tttcaaaacatgttcagaaa 45
             ||||||||||||||||||||
Sbjct: 82436 tttcaaaacatgttcagaaa 82455

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>emb|AL031906.1|HS90O12 Human DNA sequence from clone RP1-90O12 on chromosome 6p24.1-25.1,
             complete sequence
          Length = 99035

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   ttcagtatctccttagcttt 465
             ||||||||||||||||||||
Sbjct: 58208 ttcagtatctccttagcttt 58227

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>emb|CR925828.3| Zebrafish DNA sequence from clone DKEY-156K7 in linkage group 16,
             complete sequence
          Length = 188634

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   ttgatttctgttgtgacatt 533
             ||||||||||||||||||||
Sbjct: 60838 ttgatttctgttgtgacatt 60819

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>ref|XM_969637.1| PREDICTED: Tribolium castaneum similar to CG12058-PA (LOC663597),
           mRNA
          Length = 1458

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 ttttcgtcttctccagattt 486
           ||||||||||||||||||||
Sbjct: 707 ttttcgtcttctccagattt 688

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>emb|X94607.1|SCLACHXII S.cerevisiae (EU) DNA from left arm of chromosome XII
          Length = 40690

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  atcttctgttgaaaacatga 256
            ||||||||||||||||||||
Sbjct: 7515 atcttctgttgaaaacatga 7534

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>emb|AL808129.8| Zebrafish DNA sequence from clone CH211-255F14 in linkage group 8
             Contains a novel gene for a protein similar to chicken and
             human RIM binding protein 2 (KIAA0318) and three CpG
             islands, complete sequence
          Length = 157330

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    aaaaaatgttctgcttgttc 68
             ||||||||||||||||||||
Sbjct: 45069 aaaaaatgttctgcttgttc 45050

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>emb|AL603785.4| Zebrafish DNA sequence from clone BUSM1-46M7 Contains a novel gene
             similar to EDG2 (lysophosphatidic acid receptor), the 3'
             part of a gene for a novel kinase, a novel transposase
             pseudogene and a CpG island, complete sequence
          Length = 89874

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   gttcatttgaaatcgctgga 410
             ||||||||||||||||||||
Sbjct: 77461 gttcatttgaaatcgctgga 77442

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>emb|BX950187.14| Zebrafish DNA sequence from clone CH211-15O14 in linkage group 5,
             complete sequence
          Length = 160256

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   tgggacaaataatcacaaac 564
             ||||||||||||||||||||
Sbjct: 13914 tgggacaaataatcacaaac 13933

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>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a
             zinc finger protein pseudogene, a chaperonin subunit 7
             (eta) (Cct7) pseudogene, a novel pseudogene and a CpG
             island, complete sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    atgttcagaaattcaaaaaa 54
             ||||||||||||||||||||
Sbjct: 98209 atgttcagaaattcaaaaaa 98228

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>gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence
          Length = 165604

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    catgttcagaaattcaaaaa 53
             ||||||||||||||||||||
Sbjct: 39470 catgttcagaaattcaaaaa 39451

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>emb|BX465856.14| Zebrafish DNA sequence from clone DKEY-88D24 in linkage group 17,
              complete sequence
          Length = 156899

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 511    gtattgatttctgttgtgacattc 534
              ||||||||||||| ||||||||||
Sbjct: 126242 gtattgatttctgctgtgacattc 126219

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>ref|NM_212568.1| Danio rerio protein phosphatase 1, regulatory subunit 10 (ppp1r10),
            mRNA
          Length = 3738

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   atgttcagaaattcaaaaaa 54
            ||||||||||||||||||||
Sbjct: 3708 atgttcagaaattcaaaaaa 3727

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>emb|BX927261.8| Zebrafish DNA sequence from clone DKEY-17O15 in linkage group 5,
             complete sequence
          Length = 227322

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 458   ttagctttgttttcgtcttctccagatt 485
             |||| |||||||||||||| ||||||||
Sbjct: 72935 ttagttttgttttcgtcttttccagatt 72962

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>gb|DQ413236.1| Acyrthosiphon pisum isolate WHAP0465 putative 20S proteasome beta5
           subunit mRNA, complete cds
          Length = 831

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 ctgttgaaaacatgagaatg 261
           ||||||||||||||||||||
Sbjct: 143 ctgttgaaaacatgagaatg 162

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>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence
          Length = 176204

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    tttcaaaacatgttcagaaattca 49
             |||||||| |||||||||||||||
Sbjct: 68457 tttcaaaatatgttcagaaattca 68480

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>gb|AC096631.2| Homo sapiens chromosome 1 clone RP11-16L9, complete sequence
          Length = 159322

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 231   atcatcatcttctgttgaaaacat 254
             ||||||||| ||||||||||||||
Sbjct: 37445 atcatcatcatctgttgaaaacat 37422

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>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence
          Length = 200581

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     tttcaaaacatgttcagaaattca 49
              |||||||| |||||||||||||||
Sbjct: 144072 tttcaaaatatgttcagaaattca 144095

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>emb|BX324184.10| Zebrafish DNA sequence from clone CH211-184N21 in linkage group 5,
             complete sequence
          Length = 59030

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   tgggacaaataatcacaaac 564
             ||||||||||||||||||||
Sbjct: 46966 tgggacaaataatcacaaac 46947

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>gb|AC009351.7| Drosophila melanogaster, chromosome 2L, region 26A-26A, BAC clone
              BACR23K01, complete sequence
          Length = 173723

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     aattcaaaaaatgttctgcttgtt 67
              |||| |||||||||||||||||||
Sbjct: 158034 aatttaaaaaatgttctgcttgtt 158057

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>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence
          Length = 242359

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 317   tcatcttcactggcttccaccttt 340
             |||||||||||| |||||||||||
Sbjct: 58693 tcatcttcactgtcttccaccttt 58670

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>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence
          Length = 178072

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 317   tcatcttcactggcttccaccttt 340
             |||||||||||| |||||||||||
Sbjct: 75351 tcatcttcactgtcttccaccttt 75328

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>gb|AC092644.3| Homo sapiens BAC clone RP11-394A2 from 2, complete sequence
          Length = 171099

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 634   gaaatattctttccacttca 653
             ||||||||||||||||||||
Sbjct: 94726 gaaatattctttccacttca 94707

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>gb|AC103591.3| Homo sapiens chromosome 1 clone RP11-386I14, complete sequence
          Length = 152117

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tttgtgaatttctttacaaa 158
             ||||||||||||||||||||
Sbjct: 85414 tttgtgaatttctttacaaa 85433

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>gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosome 15, complete sequence
          Length = 210091

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     atttcaaaacatgttcagaa 44
              ||||||||||||||||||||
Sbjct: 168447 atttcaaaacatgttcagaa 168466

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>gb|BC048892.1| Danio rerio protein phosphatase 1, regulatory subunit 10, mRNA (cDNA
            clone MGC:55802 IMAGE:3817585), complete cds
          Length = 3738

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   atgttcagaaattcaaaaaa 54
            ||||||||||||||||||||
Sbjct: 3708 atgttcagaaattcaaaaaa 3727

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>gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, complete sequence
          Length = 224420

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 464   ttgttttcgtcttctccagatttc 487
             |||||||||| |||||||||||||
Sbjct: 38012 ttgttttcgttttctccagatttc 37989

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>emb|BX470117.7| Zebrafish DNA sequence from clone CH211-204N10 in linkage group 19,
             complete sequence
          Length = 169993

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   ttgatttctgttgtgacatt 533
             ||||||||||||||||||||
Sbjct: 78677 ttgatttctgttgtgacatt 78658

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>emb|AL772209.5| Zebrafish DNA sequence from clone DKEY-49F1 in linkage group 17,
             complete sequence
          Length = 202805

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 514   ttgatttctgttgtgacattctga 537
             |||||||||| |||||||||||||
Sbjct: 19194 ttgatttctgctgtgacattctga 19217

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>emb|Z73219.1|SCYLR047C S.cerevisiae chromosome XII reading frame ORF YLR047c
          Length = 3418

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  atcttctgttgaaaacatga 256
            ||||||||||||||||||||
Sbjct: 2366 atcttctgttgaaaacatga 2385

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>gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22 of 83 of the complete
             sequence
          Length = 280095

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    aattcaaaaaatgttctgcttgtt 67
             |||| |||||||||||||||||||
Sbjct: 70518 aatttaaaaaatgttctgcttgtt 70541

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>emb|AM231651.1| Beta vulgaris subsp. vulgaris transposon VulMITE II-2, cultivar
           Rosamona
          Length = 1011

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 473 tcttctccagatttcactaa 492
           ||||||||||||||||||||
Sbjct: 549 tcttctccagatttcactaa 530

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>emb|AM231650.1| Beta vulgaris subsp. vulgaris transposon VulMITE II-1, cultivar
           Rosamona
          Length = 1008

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 473 tcttctccagatttcactaa 492
           ||||||||||||||||||||
Sbjct: 547 tcttctccagatttcactaa 528

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>gb|DQ331077.1| Synthetic construct Saccharomyces cerevisiae clone FLH147172.01X
           FRE8 gene, complete sequence
          Length = 2061

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 237 atcttctgttgaaaacatga 256
           ||||||||||||||||||||
Sbjct: 229 atcttctgttgaaaacatga 210

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>gb|AC161462.5| Gallus gallus BAC clone CH261-174G12 from chromosome ul, complete
             sequence
          Length = 238858

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   atcatcttctgttgaaaaca 253
             ||||||||||||||||||||
Sbjct: 93070 atcatcttctgttgaaaaca 93051

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>gb|AC005285.1|AC005285 Drosophila melanogaster DNA sequence (P1s DS00121 (D128), DS05470
             (D270), and DS00108 (D120)), complete sequence
          Length = 209071

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    aattcaaaaaatgttctgcttgtt 67
             |||| |||||||||||||||||||
Sbjct: 83872 aatttaaaaaatgttctgcttgtt 83895

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>emb|CR388224.11| Zebrafish DNA sequence from clone CH211-23L10 in linkage group 3,
              complete sequence
          Length = 130988

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    tgatttctgttgtgacattc 534
              ||||||||||||||||||||
Sbjct: 113866 tgatttctgttgtgacattc 113885

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>emb|AL645600.11| Mouse DNA sequence from clone RP23-396N4 on chromosome 11, complete
             sequence
          Length = 180286

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   actcattcttgtcctttggt 436
             ||||||||||||||||||||
Sbjct: 42198 actcattcttgtcctttggt 42217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,796,698
Number of Sequences: 3902068
Number of extensions: 6796698
Number of successful extensions: 132702
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132484
Number of HSP's gapped (non-prelim): 213
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result