ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 109 1e-20
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
6gb|AY105790.1| Zea mays PCO079761 mRNA sequence 50 0.009
7gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence 46 0.15
8gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.58
9gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, compl... 42 2.3
10gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 2.3
11gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 9.0
12gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosom... 40 9.0
13gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosom... 40 9.0
14gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 40 9.0
15gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds 40 9.0
16emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 40 9.0
17gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clo... 40 9.0
18gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, com... 40 9.0
19dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 9.0
20dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 9.0
21dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 9.0
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
23ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA 40 9.0
24gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9... 40 9.0
25gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J... 40 9.0
26gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 40 9.0
27emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chr... 40 9.0 
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                       
Query: 290 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 349
           |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 817 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 758

                                                                       
Query: 350 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 409
           |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 757 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 698

                                                  
Query: 410 acctccgccttctgtaactgtatggggatcttgaacggt 448
           |||||   |||||||||| |||||| |||||||||||||
Sbjct: 697 acctctctcttctgtaacggtatggagatcttgaacggt 659



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 132 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 191
           |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 969 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 910

                       
Query: 192 agaacgcctctt 203
           |||| |||||||
Sbjct: 909 agaatgcctctt 898



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 552 tctgccatagggagagtaggatggcctcctttcatagggggagtaggatggcctccttcc 611
           ||||||||| |||||||||||  | ||||||||||  || |||||||||   | |||  |
Sbjct: 564 tctgccatacggagagtaggactgtctcctttcatgtggagagtaggatctacgcctctc 505

                             
Query: 612 atagggggagtatgatct 629
           ||||||||||||||||||
Sbjct: 504 atagggggagtatgatct 487
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                           
Query: 290     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 349
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8740278 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8740337

                                                                           
Query: 350     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 409
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8740338 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8740397

                                                      
Query: 410     acctccgccttctgtaactgtatggggatcttgaacggt 448
               |||||   |||||||||| |||||| |||||||||||||
Sbjct: 8740398 acctctctcttctgtaacggtatggagatcttgaacggt 8740436



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 132     tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 191
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8740126 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8740185

                           
Query: 192     agaacgcctctt 203
               |||| |||||||
Sbjct: 8740186 agaatgcctctt 8740197



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                           
Query: 552     tctgccatagggagagtaggatggcctcctttcatagggggagtaggatggcctccttcc 611
               ||||||||| |||||||||||  | ||||||||||  || |||||||||   | |||  |
Sbjct: 8740531 tctgccatacggagagtaggactgtctcctttcatgtggagagtaggatctacgcctctc 8740590

                                 
Query: 612     atagggggagtatgatct 629
               ||||||||||||||||||
Sbjct: 8740591 atagggggagtatgatct 8740608
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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                         
Query: 290   gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 349
             |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 83929 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 83988

                                                                         
Query: 350   tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 409
             |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 83989 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 84048

                                                    
Query: 410   acctccgccttctgtaactgtatggggatcttgaacggt 448
             |||||   |||||||||| |||||| |||||||||||||
Sbjct: 84049 acctctctcttctgtaacggtatggagatcttgaacggt 84087



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                         
Query: 132   tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 191
             |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 83777 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 83836

                         
Query: 192   agaacgcctctt 203
             |||| |||||||
Sbjct: 83837 agaatgcctctt 83848



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                         
Query: 552   tctgccatagggagagtaggatggcctcctttcatagggggagtaggatggcctccttcc 611
             ||||||||| |||||||||||  | ||||||||||  || |||||||||   | |||  |
Sbjct: 84182 tctgccatacggagagtaggactgtctcctttcatgtggagagtaggatctacgcctctc 84241

                               
Query: 612   atagggggagtatgatct 629
             ||||||||||||||||||
Sbjct: 84242 atagggggagtatgatct 84259
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                           
Query: 290     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 349
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8738113 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8738172

                                                                           
Query: 350     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 409
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8738173 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8738232

                                                      
Query: 410     acctccgccttctgtaactgtatggggatcttgaacggt 448
               |||||   |||||||||| |||||| |||||||||||||
Sbjct: 8738233 acctctctcttctgtaacggtatggagatcttgaacggt 8738271



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 132     tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 191
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8737961 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8738020

                           
Query: 192     agaacgcctctt 203
               |||| |||||||
Sbjct: 8738021 agaatgcctctt 8738032



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                           
Query: 552     tctgccatagggagagtaggatggcctcctttcatagggggagtaggatggcctccttcc 611
               ||||||||| |||||||||||  | ||||||||||  || |||||||||   | |||  |
Sbjct: 8738366 tctgccatacggagagtaggactgtctcctttcatgtggagagtaggatctacgcctctc 8738425

                                 
Query: 612     atagggggagtatgatct 629
               ||||||||||||||||||
Sbjct: 8738426 atagggggagtatgatct 8738443
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>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
            insert sequence
          Length = 1438

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                        
Query: 290  gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 349
            |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 1076 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 1017

                                                                        
Query: 350  tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 409
            |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 1016 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 957

                                                   
Query: 410  acctccgccttctgtaactgtatggggatcttgaacggt 448
            |||||   |||||||||| |||||| |||||||||||||
Sbjct: 956  acctctctcttctgtaacggtatggagatcttgaacggt 918



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 132  tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 191
            |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 1228 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 1169

                        
Query: 192  agaacgcctctt 203
            |||| |||||||
Sbjct: 1168 agaatgcctctt 1157



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 552 tctgccatagggagagtaggatggcctcctttcatagggggagtaggatggcctccttcc 611
           ||||||||| |||||||||||  | ||||||||||  || |||||||||   | |||  |
Sbjct: 823 tctgccatacggagagtaggactgtctcctttcatgtggagagtaggatctacgcctctc 764

                             
Query: 612 atagggggagtatgatct 629
           ||||||||||||||||||
Sbjct: 763 atagggggagtatgatct 746
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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 533 aaggagagtatgatctccttctgccatagggagagta 569
           ||||||||||||||| ||||||| |||| ||||||||
Sbjct: 862 aaggagagtatgatcgccttctgtcatatggagagta 826



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 132  tgagcgctccctggagacggacctcgagcatgaactgcggct 173
            ||||||||||||||| || ||||| ||| | |||||||||||
Sbjct: 1260 tgagcgctccctggacacagacctggagtacgaactgcggct 1219
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>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence
          Length = 1493

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 535 ggagagtatgatctccttctgccatagggagagta 569
           ||||||||||||| ||||||| |||| ||||||||
Sbjct: 941 ggagagtatgatcgccttctgtcatatggagagta 907
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 214    ggtgacctgctgcgcgatgccttgct 239
              ||||||||| ||||||||||||||||
Sbjct: 352154 ggtgacctggtgcgcgatgccttgct 352179
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>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence
          Length = 162258

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 262    gaacagctccttgattcttct 282
              |||||||||||||||||||||
Sbjct: 102961 gaacagctccttgattcttct 102941
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 115     caggtgcttgatgaggttgag 135
               |||||||||||||||||||||
Sbjct: 1782657 caggtgcttgatgaggttgag 1782677
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    gggagactccgacctgtcgg 532
              ||||||||||||||||||||
Sbjct: 754241 gggagactccgacctgtcgg 754222
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>gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosome 19, complete sequence
          Length = 217325

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    tttcatagggggagtaggat 600
              ||||||||||||||||||||
Sbjct: 149654 tttcatagggggagtaggat 149635
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>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete
             sequence
          Length = 237281

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   taactccgtcttctgttcct 356
             ||||||||||||||||||||
Sbjct: 94059 taactccgtcttctgttcct 94040
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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  tttcagcatatcctttctgc 258
            ||||||||||||||||||||
Sbjct: 3500 tttcagcatatcctttctgc 3519
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>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  taactccgtcttctgttcct 356
            ||||||||||||||||||||
Sbjct: 1627 taactccgtcttctgttcct 1608
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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    aacatccaaagtcatcaaggcact 103
             |||||| |||||||||||||||||
Sbjct: 55797 aacatcaaaagtcatcaaggcact 55774
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>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593
            IMAGE:30059745), complete cds
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  taactccgtcttctgttcct 356
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207
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>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence
          Length = 173707

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    gaaatacagctgcttcacta 47
             ||||||||||||||||||||
Sbjct: 84899 gaaatacagctgcttcacta 84918
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>dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030476O14 product:similar to
            MYOFERLIN (FER-1 LIKE PROTEIN 3) [Homo sapiens], full
            insert sequence
          Length = 3927

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 581  tttcatagggggagtaggat 600
            ||||||||||||||||||||
Sbjct: 3813 tttcatagggggagtaggat 3832
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>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030013K10 product:hypothetical protein,
           full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 taactccgtcttctgttcct 356
           ||||||||||||||||||||
Sbjct: 23  taactccgtcttctgttcct 4
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>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4833426I20 product:lysyl oxidase-like 4,
           full insert sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 taactccgtcttctgttcct 356
           ||||||||||||||||||||
Sbjct: 987 taactccgtcttctgttcct 968
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 80       aacatccaaagtcatcaaggcact 103
                |||||| |||||||||||||||||
Sbjct: 18963873 aacatcaaaagtcatcaaggcact 18963850
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>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA
          Length = 3683

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  taactccgtcttctgttcct 356
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207
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>gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9, complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    gaaatacagctgcttcacta 47
             ||||||||||||||||||||
Sbjct: 51495 gaaatacagctgcttcacta 51514
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>gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J24, complete sequence
          Length = 94995

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gaaatacagctgcttcacta 47
             ||||||||||||||||||||
Sbjct: 27107 gaaatacagctgcttcacta 27088
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>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 581    tttcatagggggagtaggat 600
              ||||||||||||||||||||
Sbjct: 150301 tttcatagggggagtaggat 150320
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>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
              sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 235    ttgctttcagcatatcctttctgc 258
              |||||||||||||||||| |||||
Sbjct: 156247 ttgctttcagcatatcctctctgc 156224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,961,084
Number of Sequences: 3902068
Number of extensions: 3961084
Number of successful extensions: 70450
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70217
Number of HSP's gapped (non-prelim): 218
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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