ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39h19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 220 bits (111), Expect = 4e-54 Identities = 225/263 (85%) Strand = Plus / Plus Query: 212 tctaacctctgaaggaccagctgcttctttggagcaaagcctttggcaatcgacacagag 271 ||||||||||| ||||| |||| ||||| |||||||| |||||| || |||| ||| ||| Sbjct: 4567873 tctaacctctggaggacaagcttcttctgtggagcaaggcctttcgcgatcgccacggag 4567932 Query: 272 cttacatccaccacaacggtatcatcctccttgaagtcacccttgaggacagcaagagct 331 || || || || | ||||| || || || |||||||| ||||| |||||| || || Sbjct: 4567933 ctcacgtcgacgaggacggtgtcgtcttctttgaagtcgcccttcaggacactgagggcg 4567992 Query: 332 atctcgttctccaccatctgctggatcaccctcttgacaggcctagcaccgtagttaggg 391 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 4567993 atctcgttctctaccatctgctggatcaccctcttcacaggcctagcaccgtagttaggg 4568052 Query: 392 tcaaagccaagagcgccgagatgctccacagcttccggtgtgtactgaaggtgaatcttc 451 |||||||| |||| ||| ||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 4568053 tcaaagccgagagagccaagatgctccacagcttctggtgtgtactgcagatgaatcttc 4568112 Query: 452 tgttgcagcaaccggtttttgac 474 |||||| || |||||| ||||| Sbjct: 4568113 tgttgcctcagccggttcttgac 4568135 Score = 153 bits (77), Expect = 9e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 488 atctccacaatgcgatttatctctgtcgagtccagcggttggaacacaatgtattcatct 547 |||||||| ||||||||||||||||| | ||||||||| ||||| |||||||| |||||| Sbjct: 4568284 atctccacgatgcgatttatctctgtggtgtccagcggctggaatacaatgtactcatct 4568343 Query: 548 atcctgttcaggaactctggtcggaatgtctgccgagcaatctcagtcacctgcttcttc 607 ||||| |||| |||||||| ||||||| ||||||||| || ||| |||| ||||||||| Sbjct: 4568344 atcctattcaaaaactctggccggaatgactgccgagccatgtcaatcacttgcttcttc 4568403 Query: 608 attacctcatacaccgcatccttgctgtctgttgtgtttct 648 |||| ||||| || || ||||||||||||| ||||||||| Sbjct: 4568404 attatttcataaactgcctccttgctgtctgatgtgtttct 4568444
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 220 bits (111), Expect = 4e-54 Identities = 225/263 (85%) Strand = Plus / Plus Query: 212 tctaacctctgaaggaccagctgcttctttggagcaaagcctttggcaatcgacacagag 271 ||||||||||| ||||| |||| ||||| |||||||| |||||| || |||| ||| ||| Sbjct: 103252 tctaacctctggaggacaagcttcttctgtggagcaaggcctttcgcgatcgccacggag 103311 Query: 272 cttacatccaccacaacggtatcatcctccttgaagtcacccttgaggacagcaagagct 331 || || || || | ||||| || || || |||||||| ||||| |||||| || || Sbjct: 103312 ctcacgtcgacgaggacggtgtcgtcttctttgaagtcgcccttcaggacactgagggcg 103371 Query: 332 atctcgttctccaccatctgctggatcaccctcttgacaggcctagcaccgtagttaggg 391 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 103372 atctcgttctctaccatctgctggatcaccctcttcacaggcctagcaccgtagttaggg 103431 Query: 392 tcaaagccaagagcgccgagatgctccacagcttccggtgtgtactgaaggtgaatcttc 451 |||||||| |||| ||| ||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 103432 tcaaagccgagagagccaagatgctccacagcttctggtgtgtactgcagatgaatcttc 103491 Query: 452 tgttgcagcaaccggtttttgac 474 |||||| || |||||| ||||| Sbjct: 103492 tgttgcctcagccggttcttgac 103514 Score = 153 bits (77), Expect = 9e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 488 atctccacaatgcgatttatctctgtcgagtccagcggttggaacacaatgtattcatct 547 |||||||| ||||||||||||||||| | ||||||||| ||||| |||||||| |||||| Sbjct: 103663 atctccacgatgcgatttatctctgtggtgtccagcggctggaatacaatgtactcatct 103722 Query: 548 atcctgttcaggaactctggtcggaatgtctgccgagcaatctcagtcacctgcttcttc 607 ||||| |||| |||||||| ||||||| ||||||||| || ||| |||| ||||||||| Sbjct: 103723 atcctattcaaaaactctggccggaatgactgccgagccatgtcaatcacttgcttcttc 103782 Query: 608 attacctcatacaccgcatccttgctgtctgttgtgtttct 648 |||| ||||| || || ||||||||||||| ||||||||| Sbjct: 103783 attatttcataaactgcctccttgctgtctgatgtgtttct 103823
>ref|NM_128071.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT2G25140 mRNA, complete cds Length = 3223 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 332 atctcgttctccaccatctgctggatcaccctcttgacaggcctagcaccgtagttaggg 391 ||||| |||||||||||||| || ||||| | ||| || ||||| || |||||||||||| Sbjct: 2913 atctcattctccaccatctgttgaatcactcgcttcaccggccttgccccgtagttaggg 2854 Query: 392 tcaaagccaag 402 ||||||||||| Sbjct: 2853 tcaaagccaag 2843
>gb|AY070722.1| Arabidopsis thaliana At2g25140/F13D4.100 mRNA, complete cds Length = 3223 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 332 atctcgttctccaccatctgctggatcaccctcttgacaggcctagcaccgtagttaggg 391 ||||| |||||||||||||| || ||||| | ||| || ||||| || |||||||||||| Sbjct: 2913 atctcattctccaccatctgttgaatcactcgcttcaccggccttgccccgtagttaggg 2854 Query: 392 tcaaagccaag 402 ||||||||||| Sbjct: 2853 tcaaagccaag 2843
>gb|BT002223.1| Arabidopsis thaliana At2g25140/F13D4.100 mRNA, complete cds Length = 2895 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 332 atctcgttctccaccatctgctggatcaccctcttgacaggcctagcaccgtagttaggg 391 ||||| |||||||||||||| || ||||| | ||| || ||||| || |||||||||||| Sbjct: 2759 atctcattctccaccatctgttgaatcactcgcttcaccggccttgccccgtagttaggg 2700 Query: 392 tcaaagccaag 402 ||||||||||| Sbjct: 2699 tcaaagccaag 2689
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2599307 gtgaatcttctgttgcagcaa 2599287
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 417427 agtcacccttgaggacagcaa 417447
>ref|XM_383923.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03747.1) partial mRNA Length = 6216 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 ccacgaaaccagaacaaagag 85 ||||||||||||||||||||| Sbjct: 1981 ccacgaaaccagaacaaagag 2001
>ref|XM_570285.1| Cryptococcus neoformans var. neoformans JEC21 copper zinc superoxide dismutase (CND01490) partial mRNA Length = 664 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 112 agtcacccttgaggacagcaa 92
>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence Length = 211931 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 cttgctgtctgttgtgtttct 648 ||||||||||||||||||||| Sbjct: 14694 cttgctgtctgttgtgtttct 14674
>gb|AY327614.1| Cryptococcus bacillisporus strain B4546 superoxide dismutase (SOD1) gene, partial cds Length = 830 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 183 agtcacccttgaggacagcaa 163
>gb|AY327613.1| Cryptococcus bacillisporus strain NIH312 superoxide dismutase (SOD1) gene, partial cds Length = 830 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 183 agtcacccttgaggacagcaa 163
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2609219 gtgaatcttctgttgcagcaa 2609199
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2609853 gtgaatcttctgttgcagcaa 2609833
>gb|AC105091.3| Homo sapiens chromosome 8, clone RP11-479P21, complete sequence Length = 173888 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 ttggagcaaagcctttggcaa 260 ||||||||||||||||||||| Sbjct: 106545 ttggagcaaagcctttggcaa 106565
>gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosome 10, complete sequence Length = 210757 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 628 cttgctgtctgttgtgtttct 648 ||||||||||||||||||||| Sbjct: 50801 cttgctgtctgttgtgtttct 50821
>gb|M63654.1|ECOORF123 Escherichia coli P177 (o177), bacterioferritin comigratory protein (bcp), putative hydrogenase-4 complex (hyfABCDEFGHIJR), and putative formate transporter (focB) gene, complete cds and putative permease P75 (perM) gene partial cds Length = 15115 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 11264 gtgaatcttctgttgcagcaa 11244
>gb|AF248051.1|AF248051 Filobasidiella neoformans var. bacillispora WM 780-C copper zinc superoxide dismutase (SOD1) gene, complete cds Length = 1138 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 398 agtcacccttgaggacagcaa 378
>gb|AF248050.1|AF248050 Filobasidiella neoformans var. bacillispora NYS 155B copper zinc superoxide dismutase (SOD1) gene, complete cds Length = 1824 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 907 agtcacccttgaggacagcaa 887
>gb|AF248048.1|AF248048 Filobasidiella neoformans var. neoformans B-3501 copper zinc superoxide dismutase (SOD1) gene, complete cds Length = 1915 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 868 agtcacccttgaggacagcaa 848
>gb|AF248047.1|AF248047 Filobasidiella neoformans var. neoformans B-3501 copper zinc superoxide dismutase (SOD1) mRNA, complete cds Length = 681 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agtcacccttgaggacagcaa 326 ||||||||||||||||||||| Sbjct: 121 agtcacccttgaggacagcaa 101
>gb|AC067956.3| Homo sapiens BAC clone RP11-140F14 from 2, complete sequence Length = 171708 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 aatgtattcatctatcctgtt 555 ||||||||||||||||||||| Sbjct: 101738 aatgtattcatctatcctgtt 101758
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2577440 gtgaatcttctgttgcagcaa 2577420
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 541 ttcatctatcctgttcaggaactctggtc 569 |||||| ||||||||||||||||| |||| Sbjct: 212822 ttcatcgatcctgttcaggaactcaggtc 212794
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 3397174 gtgaatcttctgttgcagcaa 3397154
>dbj|AB209690.1| Homo sapiens mRNA for ADAM 32 precursor (A disintegrin and metalloprotease domain 32) variant protein Length = 6873 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 ttggagcaaagcctttggcaa 260 ||||||||||||||||||||| Sbjct: 5288 ttggagcaaagcctttggcaa 5308
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 3327340 gtgaatcttctgttgcagcaa 3327320
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2470834 gtgaatcttctgttgcagcaa 2470814
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2504853 gtgaatcttctgttgcagcaa 2504833
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gtgaatcttctgttgcagcaa 462 ||||||||||||||||||||| Sbjct: 2713291 gtgaatcttctgttgcagcaa 2713271
>ref|NM_114746.2| Arabidopsis thaliana ATCLPC; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT3G48870 (ATCLPC) mRNA, complete cds Length = 3130 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 542 tcatctatcctgttcaggaactctggtc 569 ||||||| |||||||| ||||||||||| Sbjct: 2598 tcatctaacctgttcaagaactctggtc 2571
>ref|XM_414378.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1200015A22 (LOC416038), mRNA Length = 2964 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 576 tctgccgagcaatctcagtcacct 599 |||||||||||||| ||||||||| Sbjct: 881 tctgccgagcaatcacagtcacct 858
>gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, complete sequence Length = 177037 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 aacacaatgtattcatctat 549 |||||||||||||||||||| Sbjct: 147003 aacacaatgtattcatctat 146984
>gb|AC130546.4| Mus musculus BAC clone RP24-303D11 from chromosome 3, complete sequence Length = 171125 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 cgatccagctgtatctccacaatg 499 |||| ||||||||||||||||||| Sbjct: 71292 cgatgcagctgtatctccacaatg 71315
>gb|AC008267.6| Homo sapiens BAC clone GS1-124K5 from 7, complete sequence Length = 196954 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ctccaccatctgctggatca 359 |||||||||||||||||||| Sbjct: 24679 ctccaccatctgctggatca 24660
>gb|AC141478.3| Mus musculus BAC clone RP24-82N16 from chromosome 18, complete sequence Length = 184122 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 aacacaatgtattcatctat 549 |||||||||||||||||||| Sbjct: 31776 aacacaatgtattcatctat 31757
>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the NET1 gene for neuroepithelial cell transforming gene 1, the gene for calmodulin-like skin protein (CLSP), the CALML3 gene for calmodulin-like 3 (CLP) and four CpG islands, complete sequence Length = 183441 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 caactcccattcatgcatttcctg 113 |||||||||||| ||||||||||| Sbjct: 90008 caactcccattcctgcatttcctg 90031
>emb|AJ320262.1|AFE320262 Acidithiobacillus ferrooxidans partial petC2 gene for putative cytochrome c1 and hip gene for putative high-redox potential iron-sulfur protein (HiPIP) Length = 1615 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 gtttttgacccgatccagct 485 |||||||||||||||||||| Sbjct: 1600 gtttttgacccgatccagct 1581
>ref|XM_793553.1| PREDICTED: Strongylocentrotus purpuratus similar to protein tyrosine phosphatase, non-receptor type 4 (LOC594103), mRNA Length = 1803 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ccaagagcgccgagatgctc 417 |||||||||||||||||||| Sbjct: 437 ccaagagcgccgagatgctc 456
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18 Length = 82912 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 542 tcatctatcctgttcaggaactctggtc 569 ||||||| |||||||| ||||||||||| Sbjct: 71169 tcatctaacctgttcaagaactctggtc 71196
>emb|CR857788.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1115 (from clone DKFZp469A1115) Length = 1727 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 635 tctgttgtgtttctgagtgt 654 |||||||||||||||||||| Sbjct: 1652 tctgttgtgtttctgagtgt 1671
>gb|AY056787.1| Arabidopsis thaliana AT3g48870/T21J18_140 mRNA, complete cds Length = 3105 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 542 tcatctatcctgttcaggaactctggtc 569 ||||||| |||||||| ||||||||||| Sbjct: 2599 tcatctaacctgttcaagaactctggtc 2572
>emb|CR353338.1| Gallus gallus finished cDNA, clone ChEST283e2 Length = 1035 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 576 tctgccgagcaatctcagtcacct 599 |||||||||||||| ||||||||| Sbjct: 884 tctgccgagcaatcacagtcacct 861
>gb|AC092764.3| Pan troglodytes clone RP43-37J6, complete sequence Length = 172761 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ctccaccatctgctggatca 359 |||||||||||||||||||| Sbjct: 113136 ctccaccatctgctggatca 113155
>gb|AF150932.2| Physcomitrella patens MADS-domain protein PPM1 (ppm1) gene, promoter region and complete cds Length = 3832 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 621 ccgcatccttgctgtctgttgtgt 644 ||||||| |||||||||||||||| Sbjct: 3124 ccgcatctttgctgtctgttgtgt 3147
>dbj|AB022324.1| Arabidopsis thaliana mRNA for AtClpC, complete cds Length = 3090 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 542 tcatctatcctgttcaggaactctggtc 569 ||||||| |||||||| ||||||||||| Sbjct: 2583 tcatctaacctgttcaagaactctggtc 2556
>emb|AJ251786.1|ATU251786 Agrobacterium tumefaciens strain C58 partial vppa gene for putative proton-translocating inorganic pyrophosphatase (isoform II) Length = 567 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agcaaagcctttggcaatcg 263 |||||||||||||||||||| Sbjct: 108 agcaaagcctttggcaatcg 89
>emb|AJ251785.1|ATU251785 Agrobacterium tumefaciens strain D44 partial vppa gene for putative proton-translocating inorganic pyrophosphatase (isoform II) Length = 567 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agcaaagcctttggcaatcg 263 |||||||||||||||||||| Sbjct: 108 agcaaagcctttggcaatcg 89 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,870,516 Number of Sequences: 3902068 Number of extensions: 4870516 Number of successful extensions: 87459 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87095 Number of HSP's gapped (non-prelim): 362 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
