ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39h18 |
|---|---|
| Clone Library Name | barley_pub |
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = -1 Query: 579 PHIVYEELSKAESLDQCADVADMDKDNC-TLEERLL 475 PHIV ++LSK LD C + D+++C TL+E LL Sbjct: 4566 PHIVRKDLSKFTMLDLCYALRHFDRNDCSTLKEILL 4601
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = -1 Query: 579 PHIVYEELSKAESLDQCADVADMDKDNC-TLEERLL 475 PHIV ++LSK LD C + D+++C TL+E LL Sbjct: 4572 PHIVRKDLSKFTMLDLCYALRHFDRNDCSTLKEILL 4607
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = -1 Query: 579 PHIVYEELSKAESLDQCADVADMDKDNC-TLEERLL 475 PHIV ++LSK LD C + D+++C TL+E LL Sbjct: 4514 PHIVRKDLSKYTMLDLCYALRHFDRNDCSTLKEILL 4549
>CJ046_RAT (Q5XI53) Protein C10orf46 homolog| Length = 347 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 471 LSKAVLLECSYPCPCQQH-QHIDQEILLWIVPHIQYVDKSCLSNQPTWVVRR 623 +S + C Y C CQQH + + +++ I H++ V K ++ P + R Sbjct: 166 ISYEQIYSCVYKCVCQQHSEQMYSDLIKKITSHLERVSKELQASPPDLYIER 217
>ATG23_YEAST (Q06671) Autophagy-related protein 23 (Cytoplasm to vacuole| targeting protein 23) Length = 453 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -1 Query: 516 DMDKDNCTLEERLLRGLKRVSWEKVDVSFHNSKARSAAHSVIQ 388 D KDN +EE L R R+ E ++ FH SK + H +++ Sbjct: 191 DFKKDNKFIEEELKRQSGRIRSEMGNIDFHLSKIEESKHQLMK 233
>CJ046_MOUSE (Q8R0X2) Protein C10orf46 homolog| Length = 377 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 471 LSKAVLLECSYPCPCQQH-QHIDQEILLWIVPHIQYVDKSCLSNQPTWVVRR 623 +S + C Y C CQQH + + +++ I H++ V K ++ P + R Sbjct: 166 ISYEQIYSCVYKCVCQQHSEQMYSDLIKKITSHLERVSKELQASPPDLYIER 217
>SUBT_BACAM (P00782) Subtilisin BPN' precursor (EC 3.4.21.62) (Subtilisin Novo)| (Subtilisin DFE) (Alkaline protease) Length = 382 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Frame = -1 Query: 513 MDKDNCTLEERLLRGLKR---VSWEKVDVSFHNSKARSAAHSVIQVKDPVMHSEG 358 +D + TL E+ ++ LK+ V++ + D H + A+S + V Q+K P +HS+G Sbjct: 74 VDAASATLNEKAVKELKKDPSVAYVEEDHVAH-AYAQSVPYGVSQIKAPALHSQG 127
>CJ046_HUMAN (Q86Y37) Protein C10orf46| Length = 369 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 471 LSKAVLLECSYPCPCQQH-QHIDQEILLWIVPHIQYVDKSCLSNQPTWVVRR 623 +S + C Y C CQQH + + +++ I H++ V K ++ P + R Sbjct: 158 ISYEQIYSCVYKCVCQQHSEQMYSDLIKKITNHLERVSKELQASPPDLYIER 209
>PUR2_YEAST (P07244) Bifunctional purine biosynthetic protein ADE5,7 [Includes:| Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase); Phosphoribosylformylglycinamidine cycl Length = 802 Score = 30.4 bits (67), Expect = 4.6 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -1 Query: 372 MHSEGADVIKHMIDHFVA*WTAPIFWKQRLCCDHTRVANRGVAEP 238 +HS G +++ +I H W AP W D ++ G+ EP Sbjct: 637 VHSNGFSLVRKIIQHVALPWDAPCPW------DESKTLGEGILEP 675
>TRPV1_MOUSE (Q704Y3) Transient receptor potential cation channel subfamily V| member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1) (Vanilloid receptor 1) Length = 839 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = -1 Query: 498 CTLEERLLRGLKRVSWEKVDVSFHNSKARSAAHSVIQVKD 379 CT + +++ L + SW+ D+S +S + H++++V D Sbjct: 258 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 297
>TRPV1_CAVPO (Q6R5A3) Transient receptor potential cation channel subfamily V| member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1) (Vanilloid receptor 1) Length = 839 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = -1 Query: 498 CTLEERLLRGLKRVSWEKVDVSFHNSKARSAAHSVIQVKD 379 CT + +++ L + SW+ D+S +S + H++++V D Sbjct: 259 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 298
>TRPV1_RAT (O35433) Transient receptor potential cation channel subfamily V| member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1) (Vanilloid receptor 1) (Vanilloid receptor type 1-like) (Capsaicin receptor) Length = 838 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = -1 Query: 498 CTLEERLLRGLKRVSWEKVDVSFHNSKARSAAHSVIQVKD 379 CT + +++ L + SW+ D+S +S + H++++V D Sbjct: 257 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 296
>TRPV1_RABIT (Q6RX08) Transient receptor potential cation channel subfamily V| member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1) (Vanilloid receptor 1) Length = 842 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = -1 Query: 498 CTLEERLLRGLKRVSWEKVDVSFHNSKARSAAHSVIQVKD 379 CT + +++ L + SW+ D+S +S + H++++V D Sbjct: 260 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 299
>FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP)| Length = 603 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/50 (28%), Positives = 31/50 (62%) Frame = -1 Query: 588 KIYPHIVYEELSKAESLDQCADVADMDKDNCTLEERLLRGLKRVSWEKVD 439 K++P + E +++ + AD+A++ + L R RGLK+++W+++D Sbjct: 341 KLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVR--RGLKQITWKEID 388 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,077,073 Number of Sequences: 219361 Number of extensions: 1851165 Number of successful extensions: 4464 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4463 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
