>PSD11_MOUSE (Q8BG32) 26S proteasome non-ATPase regulatory subunit 11 (26S|
           proteasome regulatory subunit S9) (26S proteasome
           regulatory subunit p44.5)
          Length = 421

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 38/73 (52%), Positives = 48/73 (65%)
 Frame = -2

Query: 269 SRVXIAHVXEMIELXIEHVXKKLSQMILDKKLAGTXDQGAGCLIIFEDAKTEAIFPAXLX 90
           SRV I H+  +I+L    V +KLSQMILDKK  G  DQG G LIIF++   +  + A L 
Sbjct: 342 SRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALE 401

Query: 89  TISNVGKVVESLY 51
           TI N+ KVV+SLY
Sbjct: 402 TIQNMSKVVDSLY 414

>PSD11_HUMAN (O00231) 26S proteasome non-ATPase regulatory subunit 11 (26S|
           proteasome regulatory subunit S9) (26S proteasome
           regulatory subunit p44.5)
          Length = 421

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 38/73 (52%), Positives = 48/73 (65%)
 Frame = -2

Query: 269 SRVXIAHVXEMIELXIEHVXKKLSQMILDKKLAGTXDQGAGCLIIFEDAKTEAIFPAXLX 90
           SRV I H+  +I+L    V +KLSQMILDKK  G  DQG G LIIF++   +  + A L 
Sbjct: 342 SRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALE 401

Query: 89  TISNVGKVVESLY 51
           TI N+ KVV+SLY
Sbjct: 402 TIQNMSKVVDSLY 414

>RPN6_SCHPO (Q9P7S2) Probable 26S proteasome regulatory subunit rpn6|
          Length = 421

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 33/72 (45%), Positives = 47/72 (65%)
 Frame = -2

Query: 269 SRVXIAHVXEMIELXIEHVXKKLSQMILDKKLAGTXDQGAGCLIIFEDAKTEAIFPAXLX 90
           SRV ++H+ E+I L    V  KLSQMILDK   G  DQG+GCLI++++ + +  + A L 
Sbjct: 341 SRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEAALE 400

Query: 89  TISNVGKVVESL 54
            I N+G VV+ L
Sbjct: 401 VIKNMGTVVDLL 412

>RPN6_YEAST (Q12377) 26S proteasome regulatory subunit RPN6 (Proteasome|
           non-ATPase subunit 4)
          Length = 434

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = -2

Query: 263 VXIAHVXEMIELXIEHVXKKLSQMILDKKLAGTXDQGAGCLIIFEDAKTEAIFPAXLXTI 84
           V I+H+ ++I L  + V  KLSQMILDK   G  DQG G L ++E    +A + + L  +
Sbjct: 357 VEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELV 416

Query: 83  SNVGKVVESLY 51
             + KVV+ L+
Sbjct: 417 GQLNKVVDQLF 427

>YMJ5_CAEEL (P34481) Hypothetical protein F59B2.5|
          Length = 468

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 21/73 (28%), Positives = 40/73 (54%)
 Frame = -2

Query: 269 SRVXIAHVXEMIELXIEHVXKKLSQMILDKKLAGTXDQGAGCLIIFEDAKTEAIFPAXLX 90
           S + ++++  +I + +  V + +++MILDKKL G+ DQ    ++++  A     F   L 
Sbjct: 389 SEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVYPKADAANQFTRSLK 448

Query: 89  TISNVGKVVESLY 51
           TI  + K V+  Y
Sbjct: 449 TIRELTKTVDVSY 461

>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
 Frame = -1

Query: 192  DPGQEIGRDXGSGRGLPHH-------IRRRQDGGDLPCXAGNNFECRXGCREPLHERRPR 34
            +PGQ  G + G  RG P+H        R  Q GG         F     CR P   R P 
Sbjct: 947  NPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDRRGPH 1006

Query: 33   SWLEEMFCSP 4
                + F  P
Sbjct: 1007 PDFPDDFSRP 1016

>MALR_CLOBU (O05103) HTH-type transcriptional regulator malR|
          Length = 335

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 191 ILDKKLAGTXDQGAGCLIIFEDAKTEAIFPAXLXTISNVGKVVESLYMSVGQDH 30
           + +K+L G    G     I ED+  +   P  L +++ + K  +  Y SVG D+
Sbjct: 111 VKEKRLQGVICLGGNFTEIQEDSFEDIKVPVVLTSVNTISKKGKKYYSSVGIDN 164

>SPO15_SCHPO (Q10411) Sporulation-specific protein 15|
          Length = 1957

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 131  EDAKTEAIFPAXLXTISNVGKVVESLYMSVGQDHGLRRCFVL 6
            E+ + +A F      + N+GK +E+LY ++ ++   R+   L
Sbjct: 1847 EEKEKQATFDNYSEKVENLGKSIEALYFALNREISFRKSLAL 1888


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,080,347
Number of Sequences: 219361
Number of extensions: 515544
Number of successful extensions: 1130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)